jgi.p|Nanoce1779_2|670737, mRNA_4356 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670737
Unique NamemRNA_4356
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2247
Alignment locationscaffold_10:377440..379686 -

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Properties
Property NameValue
TranscriptId670823
TrackFilteredModels2
ProteinId670737
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:377440..379686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670737gene_4356Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4356CDS_4356Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670737mRNA_4356-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4356 ID=mRNA_4356|Name=jgi.p|Nanoce1779_2|670737|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
GGGTTAGATAAGACGCAAGTAAAATTTGACATACAGCGGAGAAAGGACAC
AAGGGAGGAAGCGAGGAGGGAGGGGGCCCAAAATTGAATAATTCATTATC
ATAGTTCACTCTCGTCTTTCCCTTCTGTCGCCCCGCCAATATCCCATTCA
CTGCCCGTCGTACTTGTTTTTCGATCCCGGCCTCATCAAGGCGTCGTTGC
ACACCTTGCACGTCCCTCGGACCGCGTGCTTGAGCAATGGCACGGATGAC
GATTGTCCGGTCCCCGTAAAGAGCACATCAAAGACCCATTCGTCTTCCCC
CGTAGCTGTCATGGCAAGACGAGGACTACAACGTCGAAAGTGCTGCTGGT
GCTGCTGTCGCTGCGGCTGCCGTCGGCTGGTACCAATACGCCGCGAGGGG
CCGAGGAAGGTAGACATGGCGAGGCCGCGGTGTCCAAACCCGCTGACGTG
TCTTGCTGCCAAAAGCGCCAAAATCAGGGGCGCCACGACCACTGGCAGCG
CCGAGAGAAGGACGGGGCGCATGCGAAAGTGCGCGTGGCCTGAACGCACT
GTGCATGTGGGTAAGTATGGCTGAGGTCGATAGGCAGGGGCCAAAATGTG
CGTTTTTTTTTTGTAGTAGGCGTCGATCGTTATAACGATCACTGATGACA
TGATACGTCAAGGCACCCTCGGTTAGGGGTCGTGCTCTCTGAGTTCTTGT
CACTGTATCCACGGATTACATACCCCTTTCTCCTCCCACAAACCTTTACC
AATACAGCCATGCAGCAGCAGGATGAGATCGCCGTGGCGGATCAGCTTCT
AGCTGAATGGCGGGTCCAAGCTGTCGAACGCTTGCCTGCCGAGGGGTCTG
TTGTGCGGCGCATGCTTATGAAAGGTCTGCAAGAATCGGAGGCGCTGGTC
GACAAGGTGAAACAAGCCGCGGAGATGCGAAAACAGATCGAGGGACTGCC
TGTTGGCGTGGTAAAGGAGCACATGAGCAAGGCATTGGGCCAGCTTGAGA
CGGAGCTTGCAGCCACGGGACGTGGGGAGGATGGAACCGGGACGGGTACA
AGGACGCTGGCTCAAGGCACGGAGGAGGAAGAGGCTCCTTCTGCTAGTAG
TATTACCACTGCGGCATCCTCGGAGGGTGACACGACGTACAAACTGCTAG
CGGAGCGGTTCGCGCAGGCAGACAGCAGCGTGCAGGTAAAGGGTCCGAAA
GACTCTCTGGCCCTGGCCGTGCACGTACTGCTGCAGGAGGAAGGCTTTGT
GTGCTATGGCGAAGATGAACAAAAAGGCGGGCCCACAGGCTTCGCCTCCC
CTATTCGACCTGTGTCGCGCTCCCGCTTGGTGCCTCCCCGATGGAACGCC
GACCCGGCCAACGTCTGCTTCTCCTATCGCCATGACAGGCTTAAAGGTCG
CGATATCAAGCTCATGGTGCTCTGGATGGACGACGAACGCGTCGTGCTTG
AGTTACAAGACACGGGTGGCGGTGGAAAGACTACCACGATGACGATCAAC
GGGCCGGACTATGTCAAGATTGACAACAACAGCAGCAGCAGCAGCAACAA
CAGCGGCAGTAGTGGCAAAGGCAACCCTGCCAACGCAAACAGCACCAGCC
TCCTCACCCACTTCCGTCCCTCACACTTGAACCCACTGGCCGCCTCCATC
CACACGGGTTTCATTGTCGAACTCTTGCCCACTCTCACCGCCAGTGCCGG
GGCAGGCGCAGGCCGTGGTGCCATCCTTCCCACACCTAACCCCCCTTTTT
CCTCTGACTCGCAAGGGCAAGCGCAACGTCCTCCATTTGATATTCCTGTA
CCTAATCCGCTTGGTCCAATGGTGCCACCGGGGTATGGTGATTATGGGCG
TCGTGGCGGGGGGTTAGTTCCTGATTTTGAGGGAGATTTGCAGCCGGGGG
GAGGATGGGGAGGGCCCGGGGGAGGAAACCTGATGGGGCCCGGTCATCCT
ATTTTTACGGGAGGGGGGGAGGGACGGATGGGTGAAGGAGGAGGGCTAGG
CATACCTCAGCCACGGTTCGATCCGTATGGGCCTGTGATTCCGCCAGGTA
GGGGAGGGCCGCCGATGCCACCGGGAAGGGGAGGGGTGATCGATCCTAAC
GATCCTCGGGGACCTAGAAGAGCGTTTCGTGAACCAGATCCGGACCATTT
GCCGCAGCCTGGACCACCGGGGACCTTCAGCAGTGGTGGAGGAGGAGGCG
GAGGAGGCGGGGGAGGCGGGGGAGGAGGTGGGAATTTCTATTTTTAA
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protein sequence of jgi.p|Nanoce1779_2|670737

>mRNA_4356-protein ID=mRNA_4356-protein|Name=jgi.p|Nanoce1779_2|670737|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MQQQDEIAVADQLLAEWRVQAVERLPAEGSVVRRMLMKGLQESEALVDKV
KQAAEMRKQIEGLPVGVVKEHMSKALGQLETELAATGRGEDGTGTGTRTL
AQGTEEEEAPSASSITTAASSEGDTTYKLLAERFAQADSSVQVKGPKDSL
ALAVHVLLQEEGFVCYGEDEQKGGPTGFASPIRPVSRSRLVPPRWNADPA
NVCFSYRHDRLKGRDIKLMVLWMDDERVVLELQDTGGGGKTTTMTINGPD
YVKIDNNSSSSSNNSGSSGKGNPANANSTSLLTHFRPSHLNPLAASIHTG
FIVELLPTLTASAGAGAGRGAILPTPNPPFSSDSQGQAQRPPFDIPVPNP
LGPMVPPGYGDYGRRGGGLVPDFEGDLQPGGGWGGPGGGNLMGPGHPIFT
GGGEGRMGEGGGLGIPQPRFDPYGPVIPPGRGGPPMPPGRGGVIDPNDPR
GPRRAFREPDPDHLPQPGPPGTFSSGGGGGGGGGGGGGGGGNFYF*
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mRNA from alignment at scaffold_10:377440..379686-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4356 ID=mRNA_4356|Name=jgi.p|Nanoce1779_2|670737|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at scaffold_10:377440..379686- (Nannochloropsis oceanica)
GGGTTAGATAAGACGCAAGTAAAATTTGACATACAGCGGAGAAAGGACAC
AAGGGAGGAAGCGAGGAGGGAGGGGGCCCAAAATTGAATAATTCATTATC
ATAGTTCACTCTCGTCTTTCCCTTCTGTCGCCCCGCCAATATCCCATTCA
CTGCCCGTCGTACTTGTTTTTCGATCCCGGCCTCATCAAGGCGTCGTTGC
ACACCTTGCACGTCCCTCGGACCGCGTGCTTGAGCAATGGCACGGATGAC
GATTGTCCGGTCCCCGTAAAGAGCACATCAAAGACCCATTCGTCTTCCCC
CGTAGCTGTCATGGCAAGACGAGGACTACAACGTCGAAAGTGCTGCTGGT
GCTGCTGTCGCTGCGGCTGCCGTCGGCTGGTACCAATACGCCGCGAGGGG
CCGAGGAAGGTAGACATGGCGAGGCCGCGGTGTCCAAACCCGCTGACGTG
TCTTGCTGCCAAAAGCGCCAAAATCAGGGGCGCCACGACCACTGGCAGCG
CCGAGAGAAGGACGGGGCGCATGCGAAAGTGCGCGTGGCCTGAACGCACT
GTGCATGTGGGTAAGTATGGCTGAGGTCGATAGGCAGGGGCCAAAATGTG
CGTTTTTTTTTTGTAGTAGGCGTCGATCGTTATAACGATCACTGATGACA
TGATACGTCAAGGCACCCTCGGTTAGGGGTCGTGCTCTCTGAGTTCTTGT
CACTGTATCCACGGATTACATACCCCTTTCTCCTCCCACAAACCTTTACC
AATACAGCCATGCAGCAGCAGGATGAGATCGCCGTGGCGGATCAGCTTCT
AGCTGAATGGCGGGTCCAAGCTGTCGAACGCTTGCCTGCCGAGGGGTCTG
TTGTGCGGCGCATGCTTATGAAAGGTCTGCAAGAATCGGAGGCGCTGGTC
GACAAGGTGAAACAAGCCGCGGAGATGCGAAAACAGATCGAGGGACTGCC
TGTTGGCGTGGTAAAGGAGCACATGAGCAAGGCATTGGGCCAGCTTGAGA
CGGAGCTTGCAGCCACGGGACGTGGGGAGGATGGAACCGGGACGGGTACA
AGGACGCTGGCTCAAGGCACGGAGGAGGAAGAGGCTCCTTCTGCTAGTAG
TATTACCACTGCGGCATCCTCGGAGGGTGACACGACGTACAAACTGCTAG
CGGAGCGGTTCGCGCAGGCAGACAGCAGCGTGCAGGTAAAGGGTCCGAAA
GACTCTCTGGCCCTGGCCGTGCACGTACTGCTGCAGGAGGAAGGCTTTGT
GTGCTATGGCGAAGATGAACAAAAAGGCGGGCCCACAGGCTTCGCCTCCC
CTATTCGACCTGTGTCGCGCTCCCGCTTGGTGCCTCCCCGATGGAACGCC
GACCCGGCCAACGTCTGCTTCTCCTATCGCCATGACAGGCTTAAAGGTCG
CGATATCAAGCTCATGGTGCTCTGGATGGACGACGAACGCGTCGTGCTTG
AGTTACAAGACACGGGTGGCGGTGGAAAGACTACCACGATGACGATCAAC
GGGCCGGACTATGTCAAGATTGACAACAACAGCAGCAGCAGCAGCAACAA
CAGCGGCAGTAGTGGCAAAGGCAACCCTGCCAACGCAAACAGCACCAGCC
TCCTCACCCACTTCCGTCCCTCACACTTGAACCCACTGGCCGCCTCCATC
CACACGGGTTTCATTGTCGAACTCTTGCCCACTCTCACCGCCAGTGCCGG
GGCAGGCGCAGGCCGTGGTGCCATCCTTCCCACACCTAACCCCCCTTTTT
CCTCTGACTCGCAAGGGCAAGCGCAACGTCCTCCATTTGATATTCCTGTA
CCTAATCCGCTTGGTCCAATGGTGCCACCGGGGTATGGTGATTATGGGCG
TCGTGGCGGGGGGTTAGTTCCTGATTTTGAGGGAGATTTGCAGCCGGGGG
GAGGATGGGGAGGGCCCGGGGGAGGAAACCTGATGGGGCCCGGTCATCCT
ATTTTTACGGGAGGGGGGGAGGGACGGATGGGTGAAGGAGGAGGGCTAGG
CATACCTCAGCCACGGTTCGATCCGTATGGGCCTGTGATTCCGCCAGGTA
GGGGAGGGCCGCCGATGCCACCGGGAAGGGGAGGGGTGATCGATCCTAAC
GATCCTCGGGGACCTAGAAGAGCGTTTCGTGAACCAGATCCGGACCATTT
GCCGCAGCCTGGACCACCGGGGACCTTCAGCAGTGGTGGAGGAGGAGGCG
GAGGAGGCGGGGGAGGCGGGGGAGGAGGTGGGAATTTCTATTTTTAA
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Coding sequence (CDS) from alignment at scaffold_10:377440..379686-

>mRNA_4356 ID=mRNA_4356|Name=jgi.p|Nanoce1779_2|670737|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_10:377440..379686- (Nannochloropsis oceanica)
ATGCAGCAGCAGGATGAGATCGCCGTGGCGGATCAGCTTCTAGCTGAATG
GCGGGTCCAAGCTGTCGAACGCTTGCCTGCCGAGGGGTCTGTTGTGCGGC
GCATGCTTATGAAAGGTCTGCAAGAATCGGAGGCGCTGGTCGACAAGGTG
AAACAAGCCGCGGAGATGCGAAAACAGATCGAGGGACTGCCTGTTGGCGT
GGTAAAGGAGCACATGAGCAAGGCATTGGGCCAGCTTGAGACGGAGCTTG
CAGCCACGGGACGTGGGGAGGATGGAACCGGGACGGGTACAAGGACGCTG
GCTCAAGGCACGGAGGAGGAAGAGGCTCCTTCTGCTAGTAGTATTACCAC
TGCGGCATCCTCGGAGGGTGACACGACGTACAAACTGCTAGCGGAGCGGT
TCGCGCAGGCAGACAGCAGCGTGCAGGTAAAGGGTCCGAAAGACTCTCTG
GCCCTGGCCGTGCACGTACTGCTGCAGGAGGAAGGCTTTGTGTGCTATGG
CGAAGATGAACAAAAAGGCGGGCCCACAGGCTTCGCCTCCCCTATTCGAC
CTGTGTCGCGCTCCCGCTTGGTGCCTCCCCGATGGAACGCCGACCCGGCC
AACGTCTGCTTCTCCTATCGCCATGACAGGCTTAAAGGTCGCGATATCAA
GCTCATGGTGCTCTGGATGGACGACGAACGCGTCGTGCTTGAGTTACAAG
ACACGGGTGGCGGTGGAAAGACTACCACGATGACGATCAACGGGCCGGAC
TATGTCAAGATTGACAACAACAGCAGCAGCAGCAGCAACAACAGCGGCAG
TAGTGGCAAAGGCAACCCTGCCAACGCAAACAGCACCAGCCTCCTCACCC
ACTTCCGTCCCTCACACTTGAACCCACTGGCCGCCTCCATCCACACGGGT
TTCATTGTCGAACTCTTGCCCACTCTCACCGCCAGTGCCGGGGCAGGCGC
AGGCCGTGGTGCCATCCTTCCCACACCTAACCCCCCTTTTTCCTCTGACT
CGCAAGGGCAAGCGCAACGTCCTCCATTTGATATTCCTGTACCTAATCCG
CTTGGTCCAATGGTGCCACCGGGGTATGGTGATTATGGGCGTCGTGGCGG
GGGGTTAGTTCCTGATTTTGAGGGAGATTTGCAGCCGGGGGGAGGATGGG
GAGGGCCCGGGGGAGGAAACCTGATGGGGCCCGGTCATCCTATTTTTACG
GGAGGGGGGGAGGGACGGATGGGTGAAGGAGGAGGGCTAGGCATACCTCA
GCCACGGTTCGATCCGTATGGGCCTGTGATTCCGCCAGGTAGGGGAGGGC
CGCCGATGCCACCGGGAAGGGGAGGGGTGATCGATCCTAACGATCCTCGG
GGACCTAGAAGAGCGTTTCGTGAACCAGATCCGGACCATTTGCCGCAGCC
TGGACCACCGGGGACCTTCAGCAGTGGTGGAGGAGGAGGCGGAGGAGGCG
GGGGAGGCGGGGGAGGAGGTGGGAATTTCTATTTTTAA
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Synonyms
Publications