jgi.p|Nanoce1779_2|630227, mRNA_4355 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630227
Unique Name	mRNA_4355
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1351
Alignment location	scaffold_10:374900..376399 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630313
Track	FilteredModels2
ProteinId	630227

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:374900..376399 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630227	gene_4355	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630227	mRNA_4355-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4355	CDS_4355	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:374900..376399+
coding sequence from alignment at scaffold_10:374900..376399+

mRNA sequence

>mRNA_4355 ID=mRNA_4355|Name=jgi.p|Nanoce1779_2|630227|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp
CCCGGCGCATTTAGTTCCCCACTAGGATGCATGGCCCCGCCCTTTCACTT
CAAGCAGCGATATCAGACTTCCTGGTGCGAGTTTACTATGCCGTCGTCCC
CCAAAAAATGGGGCACCACGACGATTTAACCTCCCCCCCCTTCTTCCTTC
CTTCCCTCCCTTCTCCTCACCACCATTTCCCTCTCTCCACTGATAAATAC
AGGTCACGCTTTTCCAACCTGGCATCCAATCAATTTTTCAAGTACGACGG
GTGCCCTTGAATCCCCCACCATGACAGATCCCTTGAACAGCTGCACCTAT
GGCAACGACACCACCTCCCAGTGGATTCAAGACTATCTGCTAAGCCGGCC
TGTGCGACGGAGCTTTTCGTGCTTGTGGGAGCAAGCTTTATACGACCCCT
TAACCACCATAATGCTACCTCCATTAGCGAGTTTAGTTTTGATTCTTGGC
GTCTTTGCCCTCGTCACCATTCTCGCAAACGCCTTGTCCCCAGACGGAAC
GGACGACGGCTCTAAGTGGAAGAAGGCACAACAGAAACGACGAACCTGGG
CGCGGCGCCGCCGGCAGACGCTTAAACATTGGTTGTCTGTACACCACGTG
CGTAGCTGGTTGAAGGCTCTACCGCTTCACAGCATCACCTATGCCTATGT
GGCTTCCATTACCACCCAGACCGCCGTCGAAGCCGGCTTCCTACGCCTCC
CCTCTAACATCACCCATGCTGACTGGTTCGAGAATTGCGCCAAACAAACA
AAAGCCCTGCTCTTGTGGATCAAATGCACCAATCTAGGTGTCATTTTTTT
CTCGATTGCCTTCAGCGAGACGACAATCAGACGGGTATCACAGCTCCTGA
ACCAATCCCGACCCGCGGGAGAGAAATTTGATCTGAAAGGGTCCACCGTC
GCACTGGTGACAGCATGCCAGCTTGTCTTATGGACAGCTAGCTACGCAGC
AGTGGCCTTGTCGGCCTTAATGCTTTTTGTGTGCATCCTTACCTTTCTAG
TAGCCCAATTGCCGTTACTCATCTATTCAAAAAGTACGTACACGCGATTG
CATGACACGTTTATAGGGCGTTATTTGAACAAGGAGGTTGAGACGTTTTT
TAAGGACCACGAATTTTTGCGGGTGGCCGATGATTTCAAGTCGTTAGTCC
TGCCGTTTGCGGGCCTCAGCTTTCTAATGCAAGTTAATTTATTGTTGTGC
TCGCATGAATTGGTCTCGCAGACACGACGACGGTTGGTGAGATATAGCTT
GTTGCGGCATTTGAACCTCCAGTTGCGGTTCTCAGGATTTCGGCAGAGGT
TTTGTGGTCACGGAGGAGGGGGCAAGAAGCTGATGTTGCAGAAAGAGGGG
G

protein sequence of jgi.p|Nanoce1779_2|630227

>mRNA_4355-protein ID=mRNA_4355-protein|Name=jgi.p|Nanoce1779_2|630227|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MTDPLNSCTYGNDTTSQWIQDYLLSRPVRRSFSCLWEQALYDPLTTIMLP
PLASLVLILGVFALVTILANALSPDGTDDGSKWKKAQQKRRTWARRRRQT
LKHWLSVHHVRSWLKALPLHSITYAYVASITTQTAVEAGFLRLPSNITHA
DWFENCAKQTKALLLWIKCTNLGVIFFSIAFSETTIRRVSQLLNQSRPAG
EKFDLKGSTVALVTACQLVLWTASYAAVALSALMLFVCILTFLVAQLPLL
IYSKSTYTRLHDTFIGRYLNKEVETFFKDHEFLRVADDFKSLVLPFAGLS
FLMQVNLLLCSHELVSQTRRRLVRYSLLRHLNLQLRFSGFRQRFCGHGGG
GKKLMLQKEG

mRNA from alignment at scaffold_10:374900..376399+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4355 ID=mRNA_4355|Name=jgi.p|Nanoce1779_2|630227|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at scaffold_10:374900..376399+ (Nannochloropsis oceanica)
CCCGGCGCATTTAGTTCCCCACTAGGATGCATGGCCCCGCCCTTTCACTT
CAAGCAGCGATATCAGACTTCCTGGTGCGAGTTTACTATGCCGTCGTCCC
CCAAAAAATGGGGCACCACGACGATTTAACCTCCCCCCCCTTCTTCCTTC
CTTCCCTCCCTTCTCCTCACCACCATTTCCCTCTCTCCACTGATAAATAC
AGGTCACGCTTTTCCAACCTGGCATCCAATCAATTTTTCAAGTACGACGG
GTGCCCTTGAATCCCCCACCATGACAGATCCCTTGAACAGCTGCACCTAT
GGCAACGACACCACCTCCCAGTGGATTCAAGACTATCTGCTAAGCCGGCC
TGTGCGACGGAGCTTTTCGTGCTTGTGGGAGCAAGCTTTATACGACCCCT
TAACCACCATAATGCTACCTCCATTAGCGAGTTTAGTTTTGATTCTTGGC
GTCTTTGCCCTCGTCACCATTCTCGCAAACGCCTTGTCCCCAGACGGAAC
GGACGACGGCTCTAAGTGGAAGAAGGCACAACAGAAACGACGAACCTGGG
CGCGGCGCCGCCGGCAGACGCTTAAACATTGGTTGTCTGTACACCACGTG
CGTAGCTGGTTGAAGGCTCTACCGCTTCACAGGTACGCGAAGAAATGAGG
GAGGGGAAAAGTATTTGCTTGCACTGTGTGTGCATGGCGGCGTCATGTCC
ATCATTTGAGATTGAACTTTACATCTATACTCAGGCTCACACTCCAACCC
ATACCCCTATTTCCACTCCAATAAAACACAGCATCACCTATGCCTATGTG
GCTTCCATTACCACCCAGACCGCCGTCGAAGCCGGCTTCCTACGCCTCCC
CTCTAACATCACCCATGCTGACTGGTTCGAGAATTGCGCCAAACAAACAA
AAGCCCTGCTCTTGTGGATCAAATGCACCAATCTAGGTGTCATTTTTTTC
TCGATTGCCTTCAGCGAGACGACAATCAGACGGGTATCACAGCTCCTGAA
CCAATCCCGACCCGCGGGAGAGAAATTTGATCTGAAAGGGTCCACCGTCG
CACTGGTGACAGCATGCCAGCTTGTCTTATGGACAGCTAGCTACGCAGCA
GTGGCCTTGTCGGCCTTAATGCTTTTTGTGTGCATCCTTACCTTTCTAGT
AGCCCAATTGCCGTTACTCATCTATTCAAAAAGTACGTACACGCGATTGC
ATGACACGTTTATAGGGCGTTATTTGAACAAGGAGGTTGAGACGTTTTTT
AAGGACCACGAATTTTTGCGGGTGGCCGATGATTTCAAGTCGTTAGTCCT
GCCGTTTGCGGGCCTCAGCTTTCTAATGCAAGTTAATTTATTGTTGTGCT
CGCATGAATTGGTCTCGCAGACACGACGACGGTTGGTGAGATATAGCTTG
TTGCGGCATTTGAACCTCCAGTTGCGGTTCTCAGGATTTCGGCAGAGGTT
TTGTGGTCACGGAGGAGGGGGCAAGAAGCTGATGTTGCAGAAAGAGGGGG

Coding sequence (CDS) from alignment at scaffold_10:374900..376399+

>mRNA_4355 ID=mRNA_4355|Name=jgi.p|Nanoce1779_2|630227|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_10:374900..376399+ (Nannochloropsis oceanica)
ATGACAGATCCCTTGAACAGCTGCACCTATGGCAACGACACCACCTCCCA
GTGGATTCAAGACTATCTGCTAAGCCGGCCTGTGCGACGGAGCTTTTCGT
GCTTGTGGGAGCAAGCTTTATACGACCCCTTAACCACCATAATGCTACCT
CCATTAGCGAGTTTAGTTTTGATTCTTGGCGTCTTTGCCCTCGTCACCAT
TCTCGCAAACGCCTTGTCCCCAGACGGAACGGACGACGGCTCTAAGTGGA
AGAAGGCACAACAGAAACGACGAACCTGGGCGCGGCGCCGCCGGCAGACG
CTTAAACATTGGTTGTCTGTACACCACGTGCGTAGCTGGTTGAAGGCTCT
ACCGCTTCACAGCATCACCTATGCCTATGTGGCTTCCATTACCACCCAGA
CCGCCGTCGAAGCCGGCTTCCTACGCCTCCCCTCTAACATCACCCATGCT
GACTGGTTCGAGAATTGCGCCAAACAAACAAAAGCCCTGCTCTTGTGGAT
CAAATGCACCAATCTAGGTGTCATTTTTTTCTCGATTGCCTTCAGCGAGA
CGACAATCAGACGGGTATCACAGCTCCTGAACCAATCCCGACCCGCGGGA
GAGAAATTTGATCTGAAAGGGTCCACCGTCGCACTGGTGACAGCATGCCA
GCTTGTCTTATGGACAGCTAGCTACGCAGCAGTGGCCTTGTCGGCCTTAA
TGCTTTTTGTGTGCATCCTTACCTTTCTAGTAGCCCAATTGCCGTTACTC
ATCTATTCAAAAAGTACGTACACGCGATTGCATGACACGTTTATAGGGCG
TTATTTGAACAAGGAGGTTGAGACGTTTTTTAAGGACCACGAATTTTTGC
GGGTGGCCGATGATTTCAAGTCGTTAGTCCTGCCGTTTGCGGGCCTCAGC
TTTCTAATGCAAGTTAATTTATTGTTGTGCTCGCATGAATTGGTCTCGCA
GACACGACGACGGTTGGTGAGATATAGCTTGTTGCGGCATTTGAACCTCC
AGTTGCGGTTCTCAGGATTTCGGCAGAGGTTTTGTGGTCACGGAGGAGGG
GGCAAGAAGCTGATGTTGCAGAAAGAGGGGATGACAGATCCCTTGAACAG
CTGCACCTATGGCAACGACACCACCTCCCAGTGGATTCAAGACTATCTGC
TAAGCCGGCCTGTGCGACGGAGCTTTTCGTGCTTGTGGGAGCAAGCTTTA
TACGACCCCTTAACCACCATAATGCTACCTCCATTAGCGAGTTTAGTTTT
GATTCTTGGCGTCTTTGCCCTCGTCACCATTCTCGCAAACGCCTTGTCCC
CAGACGGAACGGACGACGGCTCTAAGTGGAAGAAGGCACAACAGAAACGA
CGAACCTGGGCGCGGCGCCGCCGGCAGACGCTTAAACATTGGTTGTCTGT
ACACCACGTGCGTAGCTGGTTGAAGGCTCTACCGCTTCACAGCATCACCT
ATGCCTATGTGGCTTCCATTACCACCCAGACCGCCGTCGAAGCCGGCTTC
CTACGCCTCCCCTCTAACATCACCCATGCTGACTGGTTCGAGAATTGCGC
CAAACAAACAAAAGCCCTGCTCTTGTGGATCAAATGCACCAATCTAGGTG
TCATTTTTTTCTCGATTGCCTTCAGCGAGACGACAATCAGACGGGTATCA
CAGCTCCTGAACCAATCCCGACCCGCGGGAGAGAAATTTGATCTGAAAGG
GTCCACCGTCGCACTGGTGACAGCATGCCAGCTTGTCTTATGGACAGCTA
GCTACGCAGCAGTGGCCTTGTCGGCCTTAATGCTTTTTGTGTGCATCCTT
ACCTTTCTAGTAGCCCAATTGCCGTTACTCATCTATTCAAAAAGTACGTA
CACGCGATTGCATGACACGTTTATAGGGCGTTATTTGAACAAGGAGGTTG
AGACGTTTTTTAAGGACCACGAATTTTTGCGGGTGGCCGATGATTTCAAG
TCGTTAGTCCTGCCGTTTGCGGGCCTCAGCTTTCTAATGCAAGTTAATTT
ATTGTTGTGCTCGCATGAATTGGTCTCGCAGACACGACGACGGTTGGTGA
GATATAGCTTGTTGCGGCATTTGAACCTCCAGTTGCGGTTCTCAGGATTT
CGGCAGAGGTTTTGTGGTCACGGAGGAGGGGGCAAGAAGCTGATGTTGCA
GAAAGAGGGG

Synonyms

Publications