Properties
| Property Name | Value |
|---|
| TranscriptId | 588916 |
| Track | FilteredModels2 |
| ProteinId | 588830 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:371642..373113 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4354 ID=mRNA_4354|Name=jgi.p|Nanoce1779_2|588830|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp
GGGGTGTCGAAGGCGTCGTCTCGACCAAGGCCTCGTTTAGCATGGTGGCC
GCGCCTGCTTATGAAGTATAGCTGCCTGTAGTGTGTAAGAAAGTGCGGGT
TGGTGGAGAGCATGAGCCACGGGGGAGTGGTGTTGAGTGCTGGCTGGGGA
CGAGGAACTAGAATGGGCATTCGACCCTTCACTGATTAAAAAGTGGGCCG
CGATGTCGGGGAATGCCAATGCCATGCCGAGGGGTGGAGAGCTGGTAGAA
ATGACGCTAGGGGCAGAGACTAACGATTACAGTATATCCTTGATTTTTGA
TAATTCTGATGTCACTGCGATAAGCTTCGCAAATGCTCGTTTGGTGACAA
AAAGACAGTCTCACTGCACCCTACACCGGTACGCACCCAGAGCAAGCTGT
CTTTACTTTGACATATTTAGAGTGCTTTTATTCTGCATTTTCTTTATTTC
ACTTAAAAAAAAAGCCTGTGCGAAATATGTACAGACTCTACTGTTGGCTT
CGTCCCTCCTTCCATCTCCCCCTAGACCTCAATCTCCTCTTCCTCCTGTT
GCTGGCGATGGGGCCTCTCTCGCGCTCCACTTCCATTTAATTGTGCCCAT
TTCCGCTGCAATATATCCGCCAATTCGCTGTCATCCTCAATGACAAAACG
CCTGCTGCTGATGCTCATCGTGCTATTCACTTCCCCGCTCGGTCCCTCCG
CTGCTCCCTGGAGGACCACGTCCTCCGTCTCGGCCACATCGTCGCCACTG
TCCTCCTCCTCCTCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTATTGCTCCCACTACTATTCTCACCCTCACCCTTATCGCCAA
TGCCTTCTTTCTCCGCCTCCTTTTCCCCTCGATCCGTCAGCCTCTTAAGC
CTCTCAAACGTCGGTCCTCCCCGTATACGCACTTCTTCCATCTCTACCCA
CTCCACCTCAATCACCTCTCCCTCCACCTCCATATTCCCCTTCTCCTCCT
CACCCTTCCCAAGACTAAGAGGAAGCACGCCCATTTCCAACCGTTGCCCT
TCTGAGAGCAACGCACGAACAACACCACATTGCCAGGGAGAGAGGACAGG
ACTCCACGTCTCGCCATCCAGCTCGAGTGTTTTGTATAGTAGAACATCAC
CCAAACAAGGGAAAGAAGAGGAGGAAAAAGCAGCTCGACCGCGCCTTTGC
TGGTTGGGGGGGAAAAGGGGAAATTGCTGCAACTCTTCTATTGCGGCTGT
TGCGCCTGCTGCAGAGGATGATAGTGAGGTTTCTCCTGCCACGGCCACCA
AGGCGTAAGGCCGTTTATAACCTGATCGAGTATCACGCTCTTCCTCATCC
TCATCTTCTTCATCGTCCTCGTCTTTATCATAACCCGAAGATAAGGACGA
GGAGGAAGACGATGAAGAGGAGGAGCTGCTGTCGCTGCTGTCGTCACTCT
CCACCTCCACCTCTTCTTCCTC back to topprotein sequence of jgi.p|Nanoce1779_2|588830 >mRNA_4354-protein ID=mRNA_4354-protein|Name=jgi.p|Nanoce1779_2|588830|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MTKRLLLMLIVLFTSPLGPSAAPWRTTSSVSATSSPLSSSSSLLLLLLLL
LLLLLLLLLPLLFSPSPLSPMPSFSASFSPRSVSLLSLSNVGPPRIRTSS
ISTHSTSITSPSTSIFPFSSSPFPRLRGSTPISNRCPSESNARTTPHCQG
ERTGLHVSPSSSSVLYSRTSPKQGKEEEEKAARPRLCWLGGKRGNCCNSS
IAAVAPAAEDDSEVSPATATKA* back to topmRNA from alignment at scaffold_10:371642..373113+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4354 ID=mRNA_4354|Name=jgi.p|Nanoce1779_2|588830|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp|location=Sequence derived from alignment at scaffold_10:371642..373113+ (Nannochloropsis oceanica)
GGGGTGTCGAAGGCGTCGTCTCGACCAAGGCCTCGTTTAGCATGGTGGCC
GCGCCTGCTTATGAAGTATAGCTGCCTGTAGTGTGTAAGAAAGTGCGGGT
TGGTGGAGAGCATGAGCCACGGGGGAGTGGTGTTGAGTGCTGGCTGGGGA
CGAGGAACTAGAATGGGCATTCGACCCTTCACTGATTAAAAAGTGGGCCG
CGATGTCGGGGAATGCCAATGCCATGCCGAGGGGTGGAGAGCTGGTAGAA
ATGACGCTAGGGGCAGAGACTAACGATTACAGTATATCCTTGATTTTTGA
TAATTCTGATGTCACTGCGATAAGCTTCGCAAATGCTCGTTTGGTGACAA
AAAGACAGTCTCACTGCACCCTACACCGGTACGCACCCAGAGCAAGCTGT
CTTTACTTTGACATATTTAGAGTGCTTTTATTCTGCATTTTCTTTATTTC
ACTTAAAAAAAAAGCCTGTGCGAAATATGTACAGACTCTACTGTTGGCTT
CGTCCCTCCTTCCATCTCCCCCTAGACCTCAATCTCCTCTTCCTCCTGTT
GCTGGCGATGGGGCCTCTCTCGCGCTCCACTTCCATTTAATTGTGCCCAT
TTCCGCTGCAATATATCCGCCAATTCGCTGTCATCCTCAATGACAAAACG
CCTGCTGCTGATGCTCATCGTGCTATTCACTTCCCCGCTCGGTCCCTCCG
CTGCTCCCTGGAGGACCACGTCCTCCGTCTCGGCCACATCGTCGCCACTG
TCCTCCTCCTCCTCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTATTGCTCCCACTACTATTCTCACCCTCACCCTTATCGCCAA
TGCCTTCTTTCTCCGCCTCCTTTTCCCCTCGATCCGTCAGCCTCTTAAGC
CTCTCAAACGTCGGTCCTCCCCGTATACGCACTTCTTCCATCTCTACCCA
CTCCACCTCAATCACCTCTCCCTCCACCTCCATATTCCCCTTCTCCTCCT
CACCCTTCCCAAGACTAAGAGGAAGCACGCCCATTTCCAACCGTTGCCCT
TCTGAGAGCAACGCACGAACAACACCACATTGCCAGGGAGAGAGGACAGG
ACTCCACGTCTCGCCATCCAGCTCGAGTGTTTTGTATAGTAGAACATCAC
CCAAACAAGGGAAAGAAGAGGAGGAAAAAGCAGCTCGACCGCGCCTTTGC
TGGTTGGGGGGGAAAAGGGGAAATTGCTGCAACTCTTCTATTGCGGCTGT
TGCGCCTGCTGCAGAGGATGATAGTGAGGTTTCTCCTGCCACGGCCACCA
AGGCGTAAGGCCGTTTATAACCTGATCGAGTATCACGCTCTTCCTCATCC
TCATCTTCTTCATCGTCCTCGTCTTTATCATAACCCGAAGATAAGGACGA
GGAGGAAGACGATGAAGAGGAGGAGCTGCTGTCGCTGCTGTCGTCACTCT
CCACCTCCACCTCTTCTTCCTC back to topCoding sequence (CDS) from alignment at scaffold_10:371642..373113+ >mRNA_4354 ID=mRNA_4354|Name=jgi.p|Nanoce1779_2|588830|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_10:371642..373113+ (Nannochloropsis oceanica)
ATGACAAAACGCCTGCTGCTGATGCTCATCGTGCTATTCACTTCCCCGCT
CGGTCCCTCCGCTGCTCCCTGGAGGACCACGTCCTCCGTCTCGGCCACAT
CGTCGCCACTGTCCTCCTCCTCCTCACTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTATTGCTCCCACTACTATTCTCACCCTCACC
CTTATCGCCAATGCCTTCTTTCTCCGCCTCCTTTTCCCCTCGATCCGTCA
GCCTCTTAAGCCTCTCAAACGTCGGTCCTCCCCGTATACGCACTTCTTCC
ATCTCTACCCACTCCACCTCAATCACCTCTCCCTCCACCTCCATATTCCC
CTTCTCCTCCTCACCCTTCCCAAGACTAAGAGGAAGCACGCCCATTTCCA
ACCGTTGCCCTTCTGAGAGCAACGCACGAACAACACCACATTGCCAGGGA
GAGAGGACAGGACTCCACGTCTCGCCATCCAGCTCGAGTGTTTTGTATAG
TAGAACATCACCCAAACAAGGGAAAGAAGAGGAGGAAAAAGCAGCTCGAC
CGCGCCTTTGCTGGTTGGGGGGGAAAAGGGGAAATTGCTGCAACTCTTCT
ATTGCGGCTGTTGCGCCTGCTGCAGAGGATGATAGTGAGGTTTCTCCTGC
CACGGCCACCAAGGCGTAA back to top
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