jgi.p|Nanoce1779_2|528291, mRNA_4353 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528291
Unique NamemRNA_4353
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1293
Alignment locationscaffold_10:370164..371456 -

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Properties
Property NameValue
TranscriptId528377
TrackFilteredModels2
ProteinId528291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:370164..371456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528291gene_4353Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4353CDS_4353Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528291mRNA_4353-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4353 ID=mRNA_4353|Name=jgi.p|Nanoce1779_2|528291|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
ATGCCCGCCCCGCATGCCTCCGCCTACATACTGTTCGGGGAAGACTCCGA
AGGTGATCACAAGTTGGAGGCTGGCAAGAAGAAAGAGACAGGAAGCCTCT
CGACGGATGCGCCACCGGCGCACCATTTGCAAGGGGTAATGCGTACTGCC
ATAGCATTTACGCGGTCTATGATTGGAACGGCCGCGCTTTACATGCCTCG
CATGTTCTACACGGGTGGACTGGCCTTCTCAACTGTTACCCTCATCGCGG
CCTGTTGTATCAGCACCTACTCCATTATCCTCCTGTCGAGGGCTCACGAT
CGTCTGCCAGGCACGAAAAGCTATGGTGACGTCGTATTTTGCGCGTGGGG
CCGGCCGGGCAAATGGCTTGTGGACTTCCTCCTCGCGCTCAACCAAATAT
CATGGGTCCCCGTCTATTTTCTCTTTGTGCAACAGAATATCGCACAAGCC
ATCCCGGGGCTCGATAAGGTGTTTTCGCGTGAAGCGTTAATCACCATCCA
GTTGCTGGTGTACGTTCCTCTCTCCTGGCTCCGTCATATCAAGTACTTAG
CCACTGCCAACCTGTTCGCGAATATCTTTGTCGGCTTTGGGCTTGCTGCA
TGCTTGGTGTGGTCCTGCACAGTCCTTGCAACTGATGGGCCGGCGGCTGA
CATCCACATGCTTAATCGCAACTCGTGTTTCTTGTTTTTGGGAAGTGTGG
CAGTGGCGTTTGAGGGAATGAGCCTCGTTCTGCCAATAAAAAGGTCAATG
AAAAGACCCGAGCGATTCGAGAGGCTGGTGGCTACGAGTATGGCGGGGTT
GTGCCTTTTGGTCTGGAGTATTGGTGCGGTTGGCTACTTGGCTTTCGGGA
ATGATGTAGAGCCGTTTGTGACCAATGAACTGCCGACAAAGGGATTGTTG
GGGCCCGCGGTGAGAATTATGTATAGTCTGGCCATCCTCGCAACGTATCC
TTTGCAACTGTTTCCGGGAACTTTGATTTTGGAGGAGTATTTGGTCGAGC
CTATGGGCTTGGTCCCGTCGAGGAGGAAGGTGGCGAAGAATGGGTTGAGG
ATGTGCGTTGTGTGCTGTACGTGCTTGACGGCCATTTATGCAGGGAAGGC
CTTGGATCACTTTGTGAGTTTGATCGGAACGGTGGGGAGTTTGCCATTGG
GATTAATGTTACCAACTTTGGTGCATTTATGTCTGTTTTGGAGAACGACG
ACGGTAGCAATGCGGGTGGTCCATGTCGGGCTTGTGCTTGTGGGTTGCCT
AGCTATCGTGCTGTCGTGTGCGATTACGCTGTCAACGTGGTAA
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protein sequence of jgi.p|Nanoce1779_2|528291

>mRNA_4353-protein ID=mRNA_4353-protein|Name=jgi.p|Nanoce1779_2|528291|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MPAPHASAYILFGEDSEGDHKLEAGKKKETGSLSTDAPPAHHLQGVMRTA
IAFTRSMIGTAALYMPRMFYTGGLAFSTVTLIAACCISTYSIILLSRAHD
RLPGTKSYGDVVFCAWGRPGKWLVDFLLALNQISWVPVYFLFVQQNIAQA
IPGLDKVFSREALITIQLLVYVPLSWLRHIKYLATANLFANIFVGFGLAA
CLVWSCTVLATDGPAADIHMLNRNSCFLFLGSVAVAFEGMSLVLPIKRSM
KRPERFERLVATSMAGLCLLVWSIGAVGYLAFGNDVEPFVTNELPTKGLL
GPAVRIMYSLAILATYPLQLFPGTLILEEYLVEPMGLVPSRRKVAKNGLR
MCVVCCTCLTAIYAGKALDHFVSLIGTVGSLPLGLMLPTLVHLCLFWRTT
TVAMRVVHVGLVLVGCLAIVLSCAITLSTW*
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mRNA from alignment at scaffold_10:370164..371456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4353 ID=mRNA_4353|Name=jgi.p|Nanoce1779_2|528291|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp|location=Sequence derived from alignment at scaffold_10:370164..371456- (Nannochloropsis oceanica)
ATGCCCGCCCCGCATGCCTCCGCCTACATACTGTTCGGGGAAGACTCCGA
AGGTGATCACAAGTTGGAGGCTGGCAAGAAGAAAGAGACAGGAAGCCTCT
CGACGGATGCGCCACCGGCGCACCATTTGCAAGGGGTAATGCGTACTGCC
ATAGCATTTACGCGGTCTATGATTGGAACGGCCGCGCTTTACATGCCTCG
CATGTTCTACACGGGTGGACTGGCCTTCTCAACTGTTACCCTCATCGCGG
CCTGTTGTATCAGCACCTACTCCATTATCCTCCTGTCGAGGGCTCACGAT
CGTCTGCCAGGCACGAAAAGCTATGGTGACGTCGTATTTTGCGCGTGGGG
CCGGCCGGGCAAATGGCTTGTGGACTTCCTCCTCGCGCTCAACCAAATAT
CATGGGTCCCCGTCTATTTTCTCTTTGTGCAACAGAATATCGCACAAGCC
ATCCCGGGGCTCGATAAGGTGTTTTCGCGTGAAGCGTTAATCACCATCCA
GTTGCTGGTGTACGTTCCTCTCTCCTGGCTCCGTCATATCAAGTACTTAG
CCACTGCCAACCTGTTCGCGAATATCTTTGTCGGCTTTGGGCTTGCTGCA
TGCTTGGTGTGGTCCTGCACAGTCCTTGCAACTGATGGGCCGGCGGCTGA
CATCCACATGCTTAATCGCAACTCGTGTTTCTTGTTTTTGGGAAGTGTGG
CAGTGGCGTTTGAGGGAATGAGCCTCGTTCTGCCAATAAAAAGGTCAATG
AAAAGACCCGAGCGATTCGAGAGGCTGGTGGCTACGAGTATGGCGGGGTT
GTGCCTTTTGGTCTGGAGTATTGGTGCGGTTGGCTACTTGGCTTTCGGGA
ATGATGTAGAGCCGTTTGTGACCAATGAACTGCCGACAAAGGGATTGTTG
GGGCCCGCGGTGAGAATTATGTATAGTCTGGCCATCCTCGCAACGTATCC
TTTGCAACTGTTTCCGGGAACTTTGATTTTGGAGGAGTATTTGGTCGAGC
CTATGGGCTTGGTCCCGTCGAGGAGGAAGGTGGCGAAGAATGGGTTGAGG
ATGTGCGTTGTGTGCTGTACGTGCTTGACGGCCATTTATGCAGGGAAGGC
CTTGGATCACTTTGTGAGTTTGATCGGAACGGTGGGGAGTTTGCCATTGG
GATTAATGTTACCAACTTTGGTGCATTTATGTCTGTTTTGGAGAACGACG
ACGGTAGCAATGCGGGTGGTCCATGTCGGGCTTGTGCTTGTGGGTTGCCT
AGCTATCGTGCTGTCGTGTGCGATTACGCTGTCAACGTGGTAA
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Coding sequence (CDS) from alignment at scaffold_10:370164..371456-

>mRNA_4353 ID=mRNA_4353|Name=jgi.p|Nanoce1779_2|528291|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_10:370164..371456- (Nannochloropsis oceanica)
ATGCCCGCCCCGCATGCCTCCGCCTACATACTGTTCGGGGAAGACTCCGA
AGGTGATCACAAGTTGGAGGCTGGCAAGAAGAAAGAGACAGGAAGCCTCT
CGACGGATGCGCCACCGGCGCACCATTTGCAAGGGGTAATGCGTACTGCC
ATAGCATTTACGCGGTCTATGATTGGAACGGCCGCGCTTTACATGCCTCG
CATGTTCTACACGGGTGGACTGGCCTTCTCAACTGTTACCCTCATCGCGG
CCTGTTGTATCAGCACCTACTCCATTATCCTCCTGTCGAGGGCTCACGAT
CGTCTGCCAGGCACGAAAAGCTATGGTGACGTCGTATTTTGCGCGTGGGG
CCGGCCGGGCAAATGGCTTGTGGACTTCCTCCTCGCGCTCAACCAAATAT
CATGGGTCCCCGTCTATTTTCTCTTTGTGCAACAGAATATCGCACAAGCC
ATCCCGGGGCTCGATAAGGTGTTTTCGCGTGAAGCGTTAATCACCATCCA
GTTGCTGGTGTACGTTCCTCTCTCCTGGCTCCGTCATATCAAGTACTTAG
CCACTGCCAACCTGTTCGCGAATATCTTTGTCGGCTTTGGGCTTGCTGCA
TGCTTGGTGTGGTCCTGCACAGTCCTTGCAACTGATGGGCCGGCGGCTGA
CATCCACATGCTTAATCGCAACTCGTGTTTCTTGTTTTTGGGAAGTGTGG
CAGTGGCGTTTGAGGGAATGAGCCTCGTTCTGCCAATAAAAAGGTCAATG
AAAAGACCCGAGCGATTCGAGAGGCTGGTGGCTACGAGTATGGCGGGGTT
GTGCCTTTTGGTCTGGAGTATTGGTGCGGTTGGCTACTTGGCTTTCGGGA
ATGATGTAGAGCCGTTTGTGACCAATGAACTGCCGACAAAGGGATTGTTG
GGGCCCGCGGTGAGAATTATGTATAGTCTGGCCATCCTCGCAACGTATCC
TTTGCAACTGTTTCCGGGAACTTTGATTTTGGAGGAGTATTTGGTCGAGC
CTATGGGCTTGGTCCCGTCGAGGAGGAAGGTGGCGAAGAATGGGTTGAGG
ATGTGCGTTGTGTGCTGTACGTGCTTGACGGCCATTTATGCAGGGAAGGC
CTTGGATCACTTTGTGAGTTTGATCGGAACGGTGGGGAGTTTGCCATTGG
GATTAATGTTACCAACTTTGGTGCATTTATGTCTGTTTTGGAGAACGACG
ACGGTAGCAATGCGGGTGGTCCATGTCGGGCTTGTGCTTGTGGGTTGCCT
AGCTATCGTGCTGTCGTGTGCGATTACGCTGTCAACGTGGTAA
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Synonyms
Publications