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Properties
| Property Name | Value |
|---|
| TranscriptId | 588908 |
| Track | FilteredModels2 |
| ProteinId | 588822 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:361146..364830 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4351 ID=mRNA_4351|Name=jgi.p|Nanoce1779_2|588822|organism=Nannochloropsis oceanica|type=mRNA|length=3541bp
AAGAGTCCCGTCGCGGAGGGCACCTCGGCGAGTGGCAATTTTTCAATTCT
ACGTATTATCGAAGTCTTTCTCCTCTGTCCAGTTCCTAAGGAATGATTTG
AGTGATATATTCAAGTTGAGCTTGTCGGTGAAAGTGCTTTGTAGGATCAC
GTGGAAGTGTTTTTGTGATCGAAGAGAGCGAGAGGGAGAGGAGGTTGACG
AGTCGCTCTGGGCACACGCCCATGCCCATCTGTCCCTCTATGCAGATCAC
ACGAGCACATCTCCACTAGCCCGTAGCAACACTTATACAGAGACAGCCAT
ACAGATGTCCTCTATCGGGTGCTGCTCGTTTCGATTGCTTGGGTGGTGGA
TTCAATCGACAATACTGCATTCAATTTTAACCCAACCACCGTGACGCCTC
CTCTCCTCCCAACCTCCTTCAGATTAGTGCCACCGCCCTTCACCATGCAG
CCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGTGGCCTC
GCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGGCGCTGT
CTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCCTCCATC
TCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCAATCAGT
GGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAACCGGCA
TTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGACGCATTA
TCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGCGAACGG
CTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGACGGTGA
CGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTTGCGATG
CAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGACAGACCA
CGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGCTGGATA
TGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGTATTGAA
CTTTAGTTTGAAGAACAGAAGGGGGGGAAGAGGGAGGAGAGAGTATGAGG
AGGTACCGTAAGAAAAGGAAAAAGCAAATAGAGTGGAGATGATACAGAGA
GAGAAGAGAGAATGTGAAATGCTGAGAAGGAGATGCGTCTTTATACAGAT
ACGCTTATTTACACGAACATCCACAAGCACACATAATAAGGAGGAAAAGA
CAGGCAAGGGCTATGCAAGCCCTTTGTAGATAGACACGCTCGTGTTCGAA
CATCTTATGTGCGTGTGCGCACGGGAAGAGAGCCCACAGCAAAAGAGCAT
AACACGACATTCAATAGAATCGCATTGCCACATAAAAAGAAGGAGCCGCA
GACGTCTGCGAGGCTTTCCTGGTCATGCTCACGCACCTACCTCATTTACT
TTGCCTTTTTTAAGCAAACGCTAATTGTTTTCTTCCATCTCATCCATACC
CACCCCACAGGCACAGCCGCATATCACTTCTAGCTTAATTTTATGACAAG
TCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACTCCAACGGC
AGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAAGTCGGATT
CATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTGGACCTGAT
CAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTATGTGCCTG
AATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCATTGATCAG
GCTCCAGCCGGACTTTGGACTAACCTGCAGAATCGACGCCTGCAAAATTT
GGGCGGCACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTGTCTTCCTG
TGCCAAGCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCGCGGGCGTG
TTTGCTTCGGACACCGCGCCAAACCACATTTTATTGAACGAATATAGTAA
CGGACAAGGAATCGCGTTGCACAAAGATGGACCGCTTTACCAGAACCGAG
TTGCAATTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTTGGGATCGG
CCTCATTTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGCAATTTTCC
GTCGCACCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTCTCTGCTCG
TATTTGAGGGAGATGCGTATGAGAAGTACTGGCATGGCATTTTGCGGCGG
CATGAGCTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAGGATCGCCG
GATGAGTTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGCGGACAAGG
AGATGTTAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAGAAAATGCG
CGTTTTCTCATGTCAATATCGGATGACCGATAAATGAATTCAAATGAGCG
GAAATCATGAATAAAAGTGAAAGTGTATTTAATCGTTAGCAACATGTCTC
ACGCTTGGGCATACAAAAGTGTAATCGGCGGGTTCAAATGTCTAACATGT
TATCCTTCTGTTGCACGTTCCTTTAATCTTTACAAGCCACTGTCCTCACC
CTCTTCATTGATGCATCCACACACAAGTCATCGCGAATTGGAAAGCCTAA
ATCGGGGCGGCGAGGGTAGCGGTGGAAAAGGTGAGGGTTTATGGAAAGAC
TGCACTTCCGGCAGGGGTATTATGGCACCTTTTACACCGCCGTCTCCTTC
AACATCGACCGACTCGCTAAGCCCAATGTAATATGCCTCGAGCTTCTTCT
TCTGACGGCGGGCTCGTTCACGGAAGCGCTGGTCCATTTCCTTGCGCGCA
TCTTCAGCCCGACGGCGCTCGTTCTCTTCCCGCTCCATGGCCGCTAGCTC
CTTCTGCTCCTTTCGGACCAGCCATTCTTGCAGCTTGATATGTCGCTGCA
TGCGCTTGCGCGCCCTGTTTAGCTTATCAATGAGCATCTGCTCCTCCTTC
TCCCGCTCCGTCAAGTTGTGCGGATAAACAGCACTGGTCGGAGTGGACTG
AGAGGAGCCCTCGTGGGCTTGAAGCTCGGAAGAGATCTTCACACCTTCAG
CTCCACGGATGCGGTAAGTCATAGCTGACGGTGGAACTTGTAAACGAGTA
AAGGAAGGCGGCGACTGGTGATATGGCGGGGCCGACCGTGAGATCGTATG
GAAGCTTCCGTGGTTGCTGTGGTGGTCGTTGTGTTCCTGCCCGGACAGTG
GTTGTGCGTTATGAGGCAGTGCGGAAGTCGTAGGCGAGAGATGCCGCAGG
CAATGGTCATCCAGCGGAACACACGGGCAGCTGGCGCCCTTGCCACCGAT
GTAATCGTCGACATTGGGCACGAGGTCTATGAGAGCATGCCGCAAATCCC
CTTCTTGGATCTCAAATTTAAAAAATCGTGTCAACAGAGAGACAAAACGC
TTATTTTGCTGCTCGACCTCCTGAACGCGGTGTCGAAGATTGTTGCTAGT
GTCGAGCCGGAGCGCTTCCTCTTCCTTTTGCTGGCGCCTAC back to topprotein sequence of jgi.p|Nanoce1779_2|588822 >mRNA_4351-protein ID=mRNA_4351-protein|Name=jgi.p|Nanoce1779_2|588822|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MQPASVLVMLALILSSVASQAVGRHPRPIPSQPALSGRWLMHETSWGVLS
SISTLQGIEGAPFGNPQSVVDGPYHDGLLGDNSTGIPYFFVSEMDVSQVD
ALSNSLVSLTCSEAALANGCTLTDPESPVCIRLTVTGEMVEVVDEEEKAF
AMQALFQRHPKMEGWPTDHDWKVKKIVPRHVFVLDMFGGVKAVSVEEYLS
IEL* back to topmRNA from alignment at scaffold_10:361146..364830- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4351 ID=mRNA_4351|Name=jgi.p|Nanoce1779_2|588822|organism=Nannochloropsis oceanica|type=mRNA|length=3685bp|location=Sequence derived from alignment at scaffold_10:361146..364830- (Nannochloropsis oceanica)
AAGAGTCCCGTCGCGGAGGGCACCTCGGCGAGTGGCAATTTTTCAATTCT
ACGTATTATCGAAGTCTTTCTCCTCTGTCCAGTTCCTAAGGAATGATTTG
AGTGATATATTCAAGTTGAGCTTGTCGGTGAAAGTGCTTTGTAGGATCAC
GTGGAAGTGTTTTTGTGATCGAAGAGAGCGAGAGGGAGAGGAGGTTGACG
AGTCGCTCTGGGCACACGCCCATGCCCATCTGTCCCTCTATGCAGATCAC
ACGAGCACATCTCCACTAGCCCGTAGCAACACTTATACAGAGACAGCCAT
ACAGATGTCCTCTATCGGGTGCTGCTCGTTTCGATTGCTTGGGTGGTGGA
TTCAATCGACAATACTGCATTCAATTTTAACCCAACCACCGTGACGCCTC
CTCTCCTCCCAACCTCCTTCAGATTAGTGCCACCGCCCTTCACCATGCAG
CCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGTGGCCTC
GCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGGCGCTGT
CTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCCTCCATC
TCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCAATCAGT
GGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAACCGGCA
TTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGACGCATTA
TCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGCGAACGG
CTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGACGGTGA
CGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTTGCGATG
CAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGACAGACCA
CGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGCTGGATA
TGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGTATTGAA
CTTTAGTTTGAAGAACAGAAGGGGGGGAAGAGGGAGGAGAGAGTATGAGG
AGGTACCGTAAGAAAAGGAAAAAGCAAATAGAGTGGAGATGATACAGAGA
GAGAAGAGAGAATGTGAAATGCTGAGAAGGAGATGCGTCTTTATACAGAT
ACGCTTATTTACACGAACATCCACAAGCACACATAATAAGGAGGAAAAGA
CAGGCAAGGGCTATGCAAGCCCTTTGTAGATAGACACGCTCGTGTTCGAA
CATCTTATGTGCGTGTGCGCACGGGAAGAGAGCCCACAGCAAAAGAGCAT
AACACGACATTCAATAGAATCGCATTGCCACATAAAAAGAAGGAGCCGCA
GACGTCTGCGAGGCTTTCCTGGTCATGCTCACGCACCTACCTCATTTACT
TTGCCTTTTTTAAGCAAACGCTAATTGTTTTCTTCCATCTCATCCATACC
CACCCCACAGGCACAGCCGCATATCACTTCTAGCTTAATTTTATGACAAG
TCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACTCCAACGGC
AGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAAGTCGGATT
CATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTGGACCTGAT
CAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTATGTGCCTG
AATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCATTGATCAG
GTTAGTGGTGTGACGACATTATTATTGTAAAATGAGTTAGGGTGACATGT
TGTATGTCTGTGTGTACATATCTTATTGCATAGTACAATCAATTTTAGGC
CGTTTTCATCCTTCCTCCTTTCTTCTAATTAATCTCAAATACAGGCTCCA
GCCGGACTTTGGACTAACCTGCAGAATCGACGCCTGCAAAATTTGGGCGG
CACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTGTCTTCCTGTGCCAA
GCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCGCGGGCGTGTTTGCT
TCGGACACCGCGCCAAACCACATTTTATTGAACGAATATAGTAACGGACA
AGGAATCGCGTTGCACAAAGATGGACCGCTTTACCAGAACCGAGTTGCAA
TTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTTGGGATCGGCCTCAT
TTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGCAATTTTCCGTCGCA
CCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTCTCTGCTCGTATTTG
AGGGAGATGCGTATGAGAAGTACTGGCATGGCATTTTGCGGCGGCATGAG
CTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAGGATCGCCGGATGAG
TTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGCGGACAAGGAGATGT
TAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAGAAAATGCGCGTTTT
CTCATGTCAATATCGGATGACCGATAAATGAATTCAAATGAGCGGAAATC
ATGAATAAAAGTGAAAGTGTATTTAATCGTTAGCAACATGTCTCACGCTT
GGGCATACAAAAGTGTAATCGGCGGGTTCAAATGTCTAACATGTTATCCT
TCTGTTGCACGTTCCTTTAATCTTTACAAGCCACTGTCCTCACCCTCTTC
ATTGATGCATCCACACACAAGTCATCGCGAATTGGAAAGCCTAAATCGGG
GCGGCGAGGGTAGCGGTGGAAAAGGTGAGGGTTTATGGAAAGACTGCACT
TCCGGCAGGGGTATTATGGCACCTTTTACACCGCCGTCTCCTTCAACATC
GACCGACTCGCTAAGCCCAATGTAATATGCCTCGAGCTTCTTCTTCTGAC
GGCGGGCTCGTTCACGGAAGCGCTGGTCCATTTCCTTGCGCGCATCTTCA
GCCCGACGGCGCTCGTTCTCTTCCCGCTCCATGGCCGCTAGCTCCTTCTG
CTCCTTTCGGACCAGCCATTCTTGCAGCTTGATATGTCGCTGCATGCGCT
TGCGCGCCCTGTTTAGCTTATCAATGAGCATCTGCTCCTCCTTCTCCCGC
TCCGTCAAGTTGTGCGGATAAACAGCACTGGTCGGAGTGGACTGAGAGGA
GCCCTCGTGGGCTTGAAGCTCGGAAGAGATCTTCACACCTTCAGCTCCAC
GGATGCGGTAAGTCATAGCTGACGGTGGAACTTGTAAACGAGTAAAGGAA
GGCGGCGACTGGTGATATGGCGGGGCCGACCGTGAGATCGTATGGAAGCT
TCCGTGGTTGCTGTGGTGGTCGTTGTGTTCCTGCCCGGACAGTGGTTGTG
CGTTATGAGGCAGTGCGGAAGTCGTAGGCGAGAGATGCCGCAGGCAATGG
TCATCCAGCGGAACACACGGGCAGCTGGCGCCCTTGCCACCGATGTAATC
GTCGACATTGGGCACGAGGTCTATGAGAGCATGCCGCAAATCCCCTTCTT
GGATCTCAAATTTAAAAAATCGTGTCAACAGAGAGACAAAACGCTTATTT
TGCTGCTCGACCTCCTGAACGCGGTGTCGAAGATTGTTGCTAGTGTCGAG
CCGGAGCGCTTCCTCTTCCTTTTGCTGGCGCCTAC back to topCoding sequence (CDS) from alignment at scaffold_10:361146..364830- >mRNA_4351 ID=mRNA_4351|Name=jgi.p|Nanoce1779_2|588822|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_10:361146..364830- (Nannochloropsis oceanica)
ATGCAGCCTGCTTCCGTCCTAGTCATGCTGGCGCTTATCCTGTCAAGCGT
GGCCTCGCAAGCGGTGGGACGTCACCCGAGGCCTATCCCTTCCCAGCCGG
CGCTGTCTGGCAGGTGGCTAATGCACGAGACCTCGTGGGGCGTCTTGTCC
TCCATCTCAACCCTCCAAGGCATTGAGGGTGCCCCGTTTGGGAATCCGCA
ATCAGTGGTTGATGGACCTTATCATGACGGTCTGTTGGGCGACAACTCAA
CCGGCATTCCTTACTTCTTCGTTTCTGAGATGGATGTGAGCCAAGTGGAC
GCATTATCCAACTCCCTCGTCTCTCTCACCTGCTCCGAGGCTGCATTGGC
GAACGGCTGCACGCTGACTGACCCCGAGAGCCCGGTCTGTATTCGTTTGA
CGGTGACGGGCGAGATGGTAGAGGTGGTAGACGAGGAAGAGAAGGCTTTT
GCGATGCAAGCTTTATTTCAGCGCCACCCGAAGATGGAAGGATGGCCGAC
AGACCACGATTGGAAGGTGAAGAAGATTGTGCCTCGGCATGTTTTCGTGC
TGGATATGTTTGGTGGCGTTAAGGCCGTGAGTGTAGAGGAGTATTTGAGT
ATTGAACTTTAG back to top
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