jgi.p|Nanoce1779_2|242584, mRNA_435 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|242584
Unique NamemRNA_435
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1247
Alignment locationscaffold_3:1073189..1074653 +

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Properties
Property NameValue
TranscriptId242670
TrackFilteredModels2
ProteinId242584
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1073189..1074653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242584gene_435Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242584mRNA_435-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_435CDS_435Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_435 ID=mRNA_435|Name=jgi.p|Nanoce1779_2|242584|organism=Nannochloropsis oceanica|type=mRNA|length=1247bp
GGCAGGAATGTAAGATTTCAAATATTTTCTCGTCACTGATATTTAATTTG
GATGCAATTCTCATCGCCCGCCAAAAACGACCTGGATTGTAGGGATGCTC
TCTTTTGGCGCGCCATCCTAGCAGAGGGGTTTGCCACCGCCGCCTTTACC
TACTTTCTTGTTTCGACTTGGATCAGCTTGCAGGGCGCTGACATGACCGA
GACGGGTATTCTGCGTGTTTCTTTGTCAGCCGGATTCGGTTACGGCGTGC
TGAATTGGATCTTTCACAGCGTCTCCGGTGGGCACATGAATCCTGCTGTG
ACAGTCGCGACCATGTTCAACTGCCGTATCTCCTCCGCACGCGCTTTGTT
CTATGTCGGAGCCCAGATCGTGGGAGCCATTGCTGGTGCAGCCATGGCCC
GCGCAATGGATCCTGGCAGCTTCCGAGCCATTCAAGGCGGTACGAATCGT
TTGAATGTTGGCTGGCGCGCTGGGTTTATGGGCGAGATTATGGGGACTCT
ACTTGTCGTATTTGCTTTCCTAGTCGCCTACGATCGCCGCCGCCGGTACG
AGTCGGACCACGTGAACGTCTTGGCGCCTTTGATGGTTGGGCTCGCGGTC
ACAGCCGCACACTTGTTCCTCGTCCCCTTCACATGGTGCTCAATCAACCC
CGCACGCAGTCTGGGCGTCGCAATTATTGCCAACCGGTGGACAAAGCACT
GGATTTGGTGGGTGGGGCCCTTGGTTGCCGCCGTCGCTGGCCCTCTGATT
TATGAAAGCTTTTTCAAGCACTTCTATTCCACGGCGCCAACGGCAGAGCA
ACTTAAGACCCGTCAAGTGCCCTATGACCAAGAGCAATCATACGCCCAGC
AGCAGCAATTACCGCAGTATGGTCAACAGCAGCAGCAGTATGGCCAGCGG
CAACAAGCCGGCATCGTAGACGAGGAGCAACGTGGTATGGGCATGTCCTC
GTTCAAGTAAAGATCGCGTACCACGAGTATTTGTCTGGGTGTTTGCTTTT
CATGGAAGATAAGGAAAGACCTGTAGAATCGCAGCAAGCAATGAATGGCA
TGAATTTGGAAAAAGAAAACGAACAAAGGAAGTGTACAGGAGGTCAGAAG
ATGAGAGTATGTATATACACACAAATATGTAAAAAGCAGAGGTTTGCTCG
TCGTCGTTAATTGTCTTCTAAGAGCCAGTGAATGATGACGCGTGCATGTA
CATCCAACTTTACAAAAGACTTGATATGATAAGAGACAGCAGCCAGT
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protein sequence of jgi.p|Nanoce1779_2|242584

>mRNA_435-protein ID=mRNA_435-protein|Name=jgi.p|Nanoce1779_2|242584|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MQFSSPAKNDLDCRDALFWRAILAEGFATAAFTYFLVSTWISLQGADMTE
TGILRVSLSAGFGYGVLNWIFHSVSGGHMNPAVTVATMFNCRISSARALF
YVGAQIVGAIAGAAMARAMDPGSFRAIQGGTNRLNVGWRAGFMGEIMGTL
LVVFAFLVAYDRRRRYESDHVNVLAPLMVGLAVTAAHLFLVPFTWCSINP
ARSLGVAIIANRWTKHWIWWVGPLVAAVAGPLIYESFFKHFYSTAPTAEQ
LKTRQVPYDQEQSYAQQQQLPQYGQQQQQYGQRQQAGIVDEEQRGMGMSS
FK*
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mRNA from alignment at scaffold_3:1073189..1074653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_435 ID=mRNA_435|Name=jgi.p|Nanoce1779_2|242584|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp|location=Sequence derived from alignment at scaffold_3:1073189..1074653+ (Nannochloropsis oceanica)
GGCAGGAATGTAAGATTTCAAATATTTTCTCGTCACTGATATTTAATTTG
GATGCAATTCTCATCGCCCGCCAAAAACGACCTGGATTGTAGGGATGCTC
TCTTTTGGCGCGCCATCCTAGCAGAGGGGTTTGCCACCGCCGCCTTTACC
TACTTTCTTGTTTCGGTACGTAAGCGGGCTTATAGTGGAGGCTTGTTGGG
CGTGTTGATCGGGCTGTAGGGGAGAGGGGGGAGTTTTCGTCATGTTATAC
GTGAAGCGCAATGACTTCGGCTTTATCTCGACTTATTCTGGCCGACTTAT
TCAGGCCGAATCAGGCCGAACGATGTAAGTGATCCAGCGCACCTACCTTT
TCCCTGCTATACTACCCCATACGCATGTTATAGACTTGGATCAGCTTGCA
GGGCGCTGACATGACCGAGACGGGTATTCTGCGTGTTTCTTTGTCAGCCG
GATTCGGTTACGGCGTGCTGAATTGGATCTTTCACAGCGTCTCCGGTGGG
CACATGAATCCTGCTGTGACAGTCGCGACCATGTTCAACTGCCGTATCTC
CTCCGCACGCGCTTTGTTCTATGTCGGAGCCCAGATCGTGGGAGCCATTG
CTGGTGCAGCCATGGCCCGCGCAATGGATCCTGGCAGCTTCCGAGCCATT
CAAGGCGGTACGAATCGTTTGAATGTTGGCTGGCGCGCTGGGTTTATGGG
CGAGATTATGGGGACTCTACTTGTCGTATTTGCTTTCCTAGTCGCCTACG
ATCGCCGCCGCCGGTACGAGTCGGACCACGTGAACGTCTTGGCGCCTTTG
ATGGTTGGGCTCGCGGTCACAGCCGCACACTTGTTCCTCGTCCCCTTCAC
ATGGTGCTCAATCAACCCCGCACGCAGTCTGGGCGTCGCAATTATTGCCA
ACCGGTGGACAAAGCACTGGATTTGGTGGGTGGGGCCCTTGGTTGCCGCC
GTCGCTGGCCCTCTGATTTATGAAAGCTTTTTCAAGCACTTCTATTCCAC
GGCGCCAACGGCAGAGCAACTTAAGACCCGTCAAGTGCCCTATGACCAAG
AGCAATCATACGCCCAGCAGCAGCAATTACCGCAGTATGGTCAACAGCAG
CAGCAGTATGGCCAGCGGCAACAAGCCGGCATCGTAGACGAGGAGCAACG
TGGTATGGGCATGTCCTCGTTCAAGTAAAGATCGCGTACCACGAGTATTT
GTCTGGGTGTTTGCTTTTCATGGAAGATAAGGAAAGACCTGTAGAATCGC
AGCAAGCAATGAATGGCATGAATTTGGAAAAAGAAAACGAACAAAGGAAG
TGTACAGGAGGTCAGAAGATGAGAGTATGTATATACACACAAATATGTAA
AAAGCAGAGGTTTGCTCGTCGTCGTTAATTGTCTTCTAAGAGCCAGTGAA
TGATGACGCGTGCATGTACATCCAACTTTACAAAAGACTTGATATGATAA
GAGACAGCAGCCAGT
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Coding sequence (CDS) from alignment at scaffold_3:1073189..1074653+

>mRNA_435 ID=mRNA_435|Name=jgi.p|Nanoce1779_2|242584|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_3:1073189..1074653+ (Nannochloropsis oceanica)
ATGCAATTCTCATCGCCCGCCAAAAACGACCTGGATTGTAGGGATGCTCT
CTTTTGGCGCGCCATCCTAGCAGAGGGGTTTGCCACCGCCGCCTTTACCT
ACTTTCTTGTTTCGACTTGGATCAGCTTGCAGGGCGCTGACATGACCGAG
ACGGGTATTCTGCGTGTTTCTTTGTCAGCCGGATTCGGTTACGGCGTGCT
GAATTGGATCTTTCACAGCGTCTCCGGTGGGCACATGAATCCTGCTGTGA
CAGTCGCGACCATGTTCAACTGCCGTATCTCCTCCGCACGCGCTTTGTTC
TATGTCGGAGCCCAGATCGTGGGAGCCATTGCTGGTGCAGCCATGGCCCG
CGCAATGGATCCTGGCAGCTTCCGAGCCATTCAAGGCGGTACGAATCGTT
TGAATGTTGGCTGGCGCGCTGGGTTTATGGGCGAGATTATGGGGACTCTA
CTTGTCGTATTTGCTTTCCTAGTCGCCTACGATCGCCGCCGCCGGTACGA
GTCGGACCACGTGAACGTCTTGGCGCCTTTGATGGTTGGGCTCGCGGTCA
CAGCCGCACACTTGTTCCTCGTCCCCTTCACATGGTGCTCAATCAACCCC
GCACGCAGTCTGGGCGTCGCAATTATTGCCAACCGGTGGACAAAGCACTG
GATTTGGTGGGTGGGGCCCTTGGTTGCCGCCGTCGCTGGCCCTCTGATTT
ATGAAAGCTTTTTCAAGCACTTCTATTCCACGGCGCCAACGGCAGAGCAA
CTTAAGACCCGTCAAGTGCCCTATGACCAAGAGCAATCATACGCCCAGCA
GCAGCAATTACCGCAGTATGGTCAACAGCAGCAGCAGTATGGCCAGCGGC
AACAAGCCGGCATCGTAGACGAGGAGCAACGTGGTATGGGCATGTCCTCG
TTCAAGTAAATGCAATTCTCATCGCCCGCCAAAAACGACCTGGATTGTAG
GGATGCTCTCTTTTGGCGCGCCATCCTAGCAGAGGGGTTTGCCACCGCCG
CCTTTACCTACTTTCTTGTTTCGACTTGGATCAGCTTGCAGGGCGCTGAC
ATGACCGAGACGGGTATTCTGCGTGTTTCTTTGTCAGCCGGATTCGGTTA
CGGCGTGCTGAATTGGATCTTTCACAGCGTCTCCGGTGGGCACATGAATC
CTGCTGTGACAGTCGCGACCATGTTCAACTGCCGTATCTCCTCCGCACGC
GCTTTGTTCTATGTCGGAGCCCAGATCGTGGGAGCCATTGCTGGTGCAGC
CATGGCCCGCGCAATGGATCCTGGCAGCTTCCGAGCCATTCAAGGCGGTA
CGAATCGTTTGAATGTTGGCTGGCGCGCTGGGTTTATGGGCGAGATTATG
GGGACTCTACTTGTCGTATTTGCTTTCCTAGTCGCCTACGATCGCCGCCG
CCGGTACGAGTCGGACCACGTGAACGTCTTGGCGCCTTTGATGGTTGGGC
TCGCGGTCACAGCCGCACACTTGTTCCTCGTCCCCTTCACATGGTGCTCA
ATCAACCCCGCACGCAGTCTGGGCGTCGCAATTATTGCCAACCGGTGGAC
AAAGCACTGGATTTGGTGGGTGGGGCCCTTGGTTGCCGCCGTCGCTGGCC
CTCTGATTTATGAAAGCTTTTTCAAGCACTTCTATTCCACGGCGCCAACG
GCAGAGCAACTTAAGACCCGTCAAGTGCCCTATGACCAAGAGCAATCATA
CGCCCAGCAGCAGCAATTACCGCAGTATGGTCAACAGCAGCAGCAGTATG
GCCAGCGGCAACAAGCCGGCATCGTAGACGAGGAGCAACGTGGTATGGGC
ATGTCCTCGTTCAAGTAA
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Synonyms
Publications