jgi.p|Nanoce1779_2|588816, mRNA_4347 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588816
Unique NamemRNA_4347
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1117
Alignment locationscaffold_10:353907..355023 +

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Properties
Property NameValue
TranscriptId588902
TrackFilteredModels2
ProteinId588816
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:353907..355023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588816gene_4347Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588816mRNA_4347-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4347CDS_4347Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4347 ID=mRNA_4347|Name=jgi.p|Nanoce1779_2|588816|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp
ACAGCTCCGCGCTCTACAAGCATGCAGCCGCCGCAATTCGCAACGCCCCA
TCTCCTCCTTCTTTCAGCTGTCTTTTCCACCTTTTCAACTTATGCTTTCA
TGTCTCCCTACTCCCGGCCCGCCTTTCCTGCTCCTGCTTCTGCTGCTATT
ACCGCCCGCCACGGCCGCCGCATTTCTACTTCCACCCTCTCCACTCCTAA
TCAGCCATTCTTTCGTAGCCTAGCCGCCTCCGAAGACGACGGGGAAGATG
ACTTGACGGAACGCTCAGTGTCGTTTCTCACCCAGCTGGCCAGGGCACTG
AACAAGGACGTACCCGTGCCCACCTTCCTGGTGCCTCCCAGGGCAAGCGA
TGTGGGCCGCGTTCGGGCCTCAGTCTCATCTAGTATGACGACCATCAAAG
GCTGGTTTCCCTTGTCCATGGGTGTGTCCCTGACATTGGGTAACCCGGTC
TACCCGGCGGCGTTTGTCGGCTTCCTCTACCTCTCTCGCCCTACCGACGC
CCCCGACGTGGCAGCCGCCCTTGCCGCGGCGCTGCTGGCCGGGGTGGTCA
ACCCTTTGTTGGTCTCTTTTGTCGACGCTACGGGATGGGACGATACTTTT
TTGGGCCGCTTTCCCTTTTTGGTGGGTGCCGCGGCCACATTTTACGTCCT
GGCGCAGGTGTTGACTGAGGGGAAGGAAGTGTTTCAGGAGGTGCCTCGGC
GGGAGGAGAAGGCAAGAGTGCCGGGCTTGAAGCAAGAGCGGGACTTGCGC
TTTTTTGATGTGAAGATGAAGAATAAGGACGAGGGTGGTGGGGGTGAGGC
GAACTTAACGGTGGAGGTAAAAGAGAAAAGAGACGAATCCGAGTCAAAGG
GGCGGTGGCGGGAGGACGAGTAGGGGAAGATGAGTCAAAAAGACAAAGAG
ACAAGTAAGGATGCCTACAGTAATGTAAATTGTGACGCACGACCGCCAGA
CGATGTACATGAAGAAAGCGCAGGATATTCAAATCAGTTGTATGTATTAA
AGAAAAACGGAAAAAAGACGCGCGACCTACGTCTTGTCGCTCCGACCCTT
GATATTCATGTGTATTTCTTCTCCACTTTCCACCTCTTCTTGAAATTTAG
TCTTTCGCCCGTACCGG
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protein sequence of jgi.p|Nanoce1779_2|588816

>mRNA_4347-protein ID=mRNA_4347-protein|Name=jgi.p|Nanoce1779_2|588816|organism=Nannochloropsis oceanica|type=polypeptide|length=284bp
MQPPQFATPHLLLLSAVFSTFSTYAFMSPYSRPAFPAPASAAITARHGRR
ISTSTLSTPNQPFFRSLAASEDDGEDDLTERSVSFLTQLARALNKDVPVP
TFLVPPRASDVGRVRASVSSSMTTIKGWFPLSMGVSLTLGNPVYPAAFVG
FLYLSRPTDAPDVAAALAAALLAGVVNPLLVSFVDATGWDDTFLGRFPFL
VGAAATFYVLAQVLTEGKEVFQEVPRREEKARVPGLKQERDLRFFDVKMK
NKDEGGGGEANLTVEVKEKRDESESKGRWREDE*
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mRNA from alignment at scaffold_10:353907..355023+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4347 ID=mRNA_4347|Name=jgi.p|Nanoce1779_2|588816|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at scaffold_10:353907..355023+ (Nannochloropsis oceanica)
ACAGCTCCGCGCTCTACAAGCATGCAGCCGCCGCAATTCGCAACGCCCCA
TCTCCTCCTTCTTTCAGCTGTCTTTTCCACCTTTTCAACTTATGCTTTCA
TGTCTCCCTACTCCCGGCCCGCCTTTCCTGCTCCTGCTTCTGCTGCTATT
ACCGCCCGCCACGGCCGCCGCATTTCTACTTCCACCCTCTCCACTCCTAA
TCAGCCATTCTTTCGTAGCCTAGCCGCCTCCGAAGACGACGGGGAAGATG
ACTTGACGGAACGCTCAGTGTCGTTTCTCACCCAGCTGGCCAGGGCACTG
AACAAGGACGTACCCGTGCCCACCTTCCTGGTGCCTCCCAGGGCAAGCGA
TGTGGGCCGCGTTCGGGCCTCAGTCTCATCTAGTATGACGACCATCAAAG
GCTGGTTTCCCTTGTCCATGGGTGTGTCCCTGACATTGGGTAACCCGGTC
TACCCGGCGGCGTTTGTCGGCTTCCTCTACCTCTCTCGCCCTACCGACGC
CCCCGACGTGGCAGCCGCCCTTGCCGCGGCGCTGCTGGCCGGGGTGGTCA
ACCCTTTGTTGGTCTCTTTTGTCGACGCTACGGGATGGGACGATACTTTT
TTGGGCCGCTTTCCCTTTTTGGTGGGTGCCGCGGCCACATTTTACGTCCT
GGCGCAGGTGTTGACTGAGGGGAAGGAAGTGTTTCAGGAGGTGCCTCGGC
GGGAGGAGAAGGCAAGAGTGCCGGGCTTGAAGCAAGAGCGGGACTTGCGC
TTTTTTGATGTGAAGATGAAGAATAAGGACGAGGGTGGTGGGGGTGAGGC
GAACTTAACGGTGGAGGTAAAAGAGAAAAGAGACGAATCCGAGTCAAAGG
GGCGGTGGCGGGAGGACGAGTAGGGGAAGATGAGTCAAAAAGACAAAGAG
ACAAGTAAGGATGCCTACAGTAATGTAAATTGTGACGCACGACCGCCAGA
CGATGTACATGAAGAAAGCGCAGGATATTCAAATCAGTTGTATGTATTAA
AGAAAAACGGAAAAAAGACGCGCGACCTACGTCTTGTCGCTCCGACCCTT
GATATTCATGTGTATTTCTTCTCCACTTTCCACCTCTTCTTGAAATTTAG
TCTTTCGCCCGTACCGG
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Coding sequence (CDS) from alignment at scaffold_10:353907..355023+

>mRNA_4347 ID=mRNA_4347|Name=jgi.p|Nanoce1779_2|588816|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_10:353907..355023+ (Nannochloropsis oceanica)
ATGCAGCCGCCGCAATTCGCAACGCCCCATCTCCTCCTTCTTTCAGCTGT
CTTTTCCACCTTTTCAACTTATGCTTTCATGTCTCCCTACTCCCGGCCCG
CCTTTCCTGCTCCTGCTTCTGCTGCTATTACCGCCCGCCACGGCCGCCGC
ATTTCTACTTCCACCCTCTCCACTCCTAATCAGCCATTCTTTCGTAGCCT
AGCCGCCTCCGAAGACGACGGGGAAGATGACTTGACGGAACGCTCAGTGT
CGTTTCTCACCCAGCTGGCCAGGGCACTGAACAAGGACGTACCCGTGCCC
ACCTTCCTGGTGCCTCCCAGGGCAAGCGATGTGGGCCGCGTTCGGGCCTC
AGTCTCATCTAGTATGACGACCATCAAAGGCTGGTTTCCCTTGTCCATGG
GTGTGTCCCTGACATTGGGTAACCCGGTCTACCCGGCGGCGTTTGTCGGC
TTCCTCTACCTCTCTCGCCCTACCGACGCCCCCGACGTGGCAGCCGCCCT
TGCCGCGGCGCTGCTGGCCGGGGTGGTCAACCCTTTGTTGGTCTCTTTTG
TCGACGCTACGGGATGGGACGATACTTTTTTGGGCCGCTTTCCCTTTTTG
GTGGGTGCCGCGGCCACATTTTACGTCCTGGCGCAGGTGTTGACTGAGGG
GAAGGAAGTGTTTCAGGAGGTGCCTCGGCGGGAGGAGAAGGCAAGAGTGC
CGGGCTTGAAGCAAGAGCGGGACTTGCGCTTTTTTGATGTGAAGATGAAG
AATAAGGACGAGGGTGGTGGGGGTGAGGCGAACTTAACGGTGGAGGTAAA
AGAGAAAAGAGACGAATCCGAGTCAAAGGGGCGGTGGCGGGAGGACGAGT
AG
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Synonyms
Publications