jgi.p|Nanoce1779_2|527854, mRNA_4346 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|527854
Unique NamemRNA_4346
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_10:349746..351065 -

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Properties
Property NameValue
TranscriptId527940
TrackFilteredModels2
ProteinId527854
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:349746..351065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527854gene_4346Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|527854mRNA_4346-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4346CDS_4346Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4346 ID=mRNA_4346|Name=jgi.p|Nanoce1779_2|527854|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
ATGGCCGAACTCACTGAAAAACAGGTGGAATTGCTGCGATCTGTGGAGGT
TGACATGAGGGATGTGGTGATGAAGAAGCATGGAGGGGGCATTGGCCAGG
GGTCGTTTTCGGTGGTCTATAAAGGATATTATCAGAATTCTCACGTGGCG
ATCAAGGTGTTAAAGAAGGTTGATGAGAGAAATTTCAGGCGTTTTCTAGA
AGAGATTTTGTTGCATAAGGATTTGAGGCACCCGAATGTGGTGATGTTTC
GGGGAGCGAGTTGGAGGGACGGACGGTTGTTAATGCTGGTGGATTTTGCT
GGGAGAGGGACGCTGGCTGATGTCTTGAGAAGATCTCAGGGAACTTTGAG
GTGGAAGCCGGTGAAATTGAATATGGCCCTAGGCATTGCGAAGGGCATGG
CATTCTTACACCAGACGCGGTATTATGACATGTGGACGAGTTCGTATCAG
CGGTGTGTGGTACATCGGGATCTCAAGCCCCAGAATATTTTGGTGACTGA
TGCGTATCACGTCCAAATTACTGACTTTGGGGAGGCACGAACAGTGGATC
ATGAAAATACCATGACCCAGGTGGGGACTCAGTTGTTTGTGGCTCCCGAA
GTGGTTAGGGGGGAGAGGTATTCGGAGAAGTGTGATGTGTATTCATTTGC
GGTTGTGCTGTTGGCGATGCTGGAGTTGCGGCCGGATCACGAGTGTCCCC
TCGCCCAACACAAGGAGTTCAAGGGCGTGGTGGCTCATGCAGTGACGCGG
GCCGTGGTCTACGACGATCTCCGTCCGACCATCAAGGGCTGTCCTTACCC
CGCGCTCAAGACGTTAATTGAAAGGTGCTGGATCCCGGACGTCAACGACC
GCCCAAGCTTCGCTGCCGTCGTCGAGGCGTTGGACGGGCGCGTCCGCCGG
GAAGTGAGCGATTACACCCGGCCAACATCCGGCAGTAGTGGCAGTCATTC
AAACAGCTCGGGGTCTGGGTTGTCATACGGAAGTACTGATTTGATGATGC
TTCGGGAGGGGTTGCGGCAAGGGGCGGGGCGATTAGGGGCGAGCGCCGCA
GGAAATGGGGACCGCTCTTTGCGTGTCCCTCAAGGCTCGAGGGAAAGTCA
TCAGAATGGAGGCACCAGGGGTAAGTAA
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protein sequence of jgi.p|Nanoce1779_2|527854

>mRNA_4346-protein ID=mRNA_4346-protein|Name=jgi.p|Nanoce1779_2|527854|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MAELTEKQVELLRSVEVDMRDVVMKKHGGGIGQGSFSVVYKGYYQNSHVA
IKVLKKVDERNFRRFLEEILLHKDLRHPNVVMFRGASWRDGRLLMLVDFA
GRGTLADVLRRSQGTLRWKPVKLNMALGIAKGMAFLHQTRYYDMWTSSYQ
RCVVHRDLKPQNILVTDAYHVQITDFGEARTVDHENTMTQVGTQLFVAPE
VVRGERYSEKCDVYSFAVVLLAMLELRPDHECPLAQHKEFKGVVAHAVTR
AVVYDDLRPTIKGCPYPALKTLIERCWIPDVNDRPSFAAVVEALDGRVRR
EVSDYTRPTSGSSGSHSNSSGSGLSYGSTDLMMLREGLRQGAGRLGASAA
GNGDRSLRVPQGSRESHQNGGTRGK*
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mRNA from alignment at scaffold_10:349746..351065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4346 ID=mRNA_4346|Name=jgi.p|Nanoce1779_2|527854|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp|location=Sequence derived from alignment at scaffold_10:349746..351065- (Nannochloropsis oceanica)
ATGGCCGAACTCACTGAAAAACAGGTGGAATTGCTGCGATCTGTGGAGGT
TGACATGAGGGATGTGGTGATGAAGAAGCATGGAGGGGGCATTGGCCAGG
GGTCGTTTTCGGTGGTCTATAAAGGATATTATCAGAATTCTCACGTGGCG
ATCAAGGTGTTAAAGAAGGTTGATGAGAGAAATTTCAGGCGTTTTCTAGA
AGAGATTTTGTTGCATAAGGATTTGAGGCACCCGAATGTGGTGATGTTTC
GGGGAGCGAGTTGGAGGGACGGACGGTTGTTAATGCTGGTGGATTTTGCT
GGGAGAGGGACGCTGGCTGATGTCTTGAGAAGATCTCAGGGAACTTTGAG
GTGGAAGCCGGTGAAATTGAATATGGCCCTAGGCATTGCGAAGGGCATGG
CATTCTTACACCAGACGCGGTATTATGACATGTGGACGAGTTCGTATCAG
CGGTGTGTGGTACATCGGGATCTCAAGCCCCAGAATATTTTGGTGACTGA
TGCGTATCACGTCCAAATTACTGACTTTGGGGAGGCACGAACAGTGGATC
ATGAAAATACCATGACCCAGGTGGGGACTCAGTTGTTTGTGGCTCCCGAA
GTGGTTAGGGGGGAGAGGTATTCGGAGAAGTGTGATGTGTATTCATTTGC
GGTTGTGCTGTTGGCGATGCTGGAGTTGCGGCCGGATGTGCTTGATGTCT
TTGCAGAGGCCCTGCCGGAGATGGAGAGATCTGAGACTGGGATCACGCGG
GAGAGGATGAAGGAACCGAAAGGCGTAGAGGTGACGGATGCATGCAAGAC
ATGCCCGCTCAACAAGGGTTATCAACCTCCGCCTGGCGTTTCCTTGGCGC
AAGCTCAAGCGGCTGCCTCAACGCCTGAGCACGAGTGTCCCCTCGCCCAA
CACAAGGAGTTCAAGGGCGTGGTGGCTCATGCAGTGACGCGGGCCGTGGT
CTACGACGATCTCCGTCCGACCATCAAGGGCTGTCCTTACCCCGCGCTCA
AGACGTTAATTGAAAGGTGCTGGATCCCGGACGTCAACGACCGCCCAAGC
TTCGCTGCCGTCGTCGAGGCGTTGGACGGGCGCGTCCGCCGGGAAGTGAG
CGATTACACCCGGCCAACATCCGGCAGTAGTGGCAGTCATTCAAACAGCT
CGGGGTCTGGGTTGTCATACGGAAGTACTGATTTGATGATGCTTCGGGAG
GGGTTGCGGCAAGGGGCGGGGCGATTAGGGGCGAGCGCCGCAGGAAATGG
GGACCGCTCTTTGCGTGTCCCTCAAGGCTCGAGGGAAAGTCATCAGAATG
GAGGCACCAGGGGTAAGTAA
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Coding sequence (CDS) from alignment at scaffold_10:349746..351065-

>mRNA_4346 ID=mRNA_4346|Name=jgi.p|Nanoce1779_2|527854|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_10:349746..351065- (Nannochloropsis oceanica)
CACGAGTGTCCCCTCGCCCAACACAAGGAGTTCAAGGGCGTGGTGGCTCA
TGCAGTGACGCGGGCCGTGGTCTACGACGATCTCCGTCCGACCATCAAGG
GCTGTCCTTACCCCGCGCTCAAGACGTTAATTGAAAGGTGCTGGATCCCG
GACGTCAACGACCGCCCAAGCTTCGCTGCCGTCGTCGAGGCGTTGGACGG
GCGCGTCCGCCGGGAAGTGAGCGATTACACCCGGCCAACATCCGGCAGTA
GTGGCAGTCATTCAAACAGCTCGGGGTCTGGGTTGTCATACGGAAGTACT
GATTTGATGATGCTTCGGGAGGGGTTGCGGCAAGGGGCGGGGCGATTAGG
GGCGAGCGCCGCAGGAAATGGGGACCGCTCTTTGCGTGTCCCTCAAGGCT
CGAGGGAAAGTCATCAGAATGGAGGCACCAGGGGTAAGTAAATGGCCGAA
CTCACTGAAAAACAGGTGGAATTGCTGCGATCTGTGGAGGTTGACATGAG
GGATGTGGTGATGAAGAAGCATGGAGGGGGCATTGGCCAGGGGTCGTTTT
CGGTGGTCTATAAAGGATATTATCAGAATTCTCACGTGGCGATCAAGGTG
TTAAAGAAGGTTGATGAGAGAAATTTCAGGCGTTTTCTAGAAGAGATTTT
GTTGCATAAGGATTTGAGGCACCCGAATGTGGTGATGTTTCGGGGAGCGA
GTTGGAGGGACGGACGGTTGTTAATGCTGGTGGATTTTGCTGGGAGAGGG
ACGCTGGCTGATGTCTTGAGAAGATCTCAGGGAACTTTGAGGTGGAAGCC
GGTGAAATTGAATATGGCCCTAGGCATTGCGAAGGGCATGGCATTCTTAC
ACCAGACGCGGTATTATGACATGTGGACGAGTTCGTATCAGCGGTGTGTG
GTACATCGGGATCTCAAGCCCCAGAATATTTTGGTGACTGATGCGTATCA
CGTCCAAATTACTGACTTTGGGGAGGCACGAACAGTGGATCATGAAAATA
CCATGACCCAGGTGGGGACTCAGTTGTTTGTGGCTCCCGAAGTGGTTAGG
GGGGAGAGGTATTCGGAGAAGTGTGATGTGTATTCATTTGCGGTTGTGCT
GTTGGCGATGCTGGAGTTGCGGCCGGATCACGAGTGTCCCCTCGCCCAAC
ACAAGGAGTTCAAGGGCGTGGTGGCTCATGCAGTGACGCGGGCCGTGGTC
TACGACGATCTCCGTCCGACCATCAAGGGCTGTCCTTACCCCGCGCTCAA
GACGTTAATTGAAAGGTGCTGGATCCCGGACGTCAACGACCGCCCAAGCT
TCGCTGCCGTCGTCGAGGCGTTGGACGGGCGCGTCCGCCGGGAAGTGAGC
GATTACACCCGGCCAACATCCGGCAGTAGTGGCAGTCATTCAAACAGCTC
GGGGTCTGGGTTGTCATACGGAAGTACTGATTTGATGATGCTTCGGGAGG
GGTTGCGGCAAGGGGCGGGGCGATTAGGGGCGAGCGCCGCAGGAAATGGG
GACCGCTCTTTGCGTGTCCCTCAAGGCTCGAGGGAAAGTCATCAGAATGG
AGGCACCAGGGGTAAGTAAATGGCCGAACTCACTGAAAAACAGGTGGAAT
TGCTGCGATCTGTGGAGGTTGACATGAGGGATGTGGTGATGAAGAAGCAT
GGAGGGGGCATTGGCCAGGGGTCGTTTTCGGTGGTCTATAAAGGATATTA
TCAGAATTCTCACGTGGCGATCAAGGTGTTAAAGAAGGTTGATGAGAGAA
ATTTCAGGCGTTTTCTAGAAGAGATTTTGTTGCATAAGGATTTGAGGCAC
CCGAATGTGGTGATGTTTCGGGGAGCGAGTTGGAGGGACGGACGGTTGTT
AATGCTGGTGGATTTTGCTGGGAGAGGGACGCTGGCTGATGTCTTGAGAA
GATCTCAGGGAACTTTGAGGTGGAAGCCGGTGAAATTGAATATGGCCCTA
GGCATTGCGAAGGGCATGGCATTCTTACACCAGACGCGGTATTATGACAT
GTGGACGAGTTCGTATCAGCGGTGTGTGGTACATCGGGATCTCAAGCCCC
AGAATATTTTGGTGACTGATGCGTATCACGTCCAAATTACTGACTTTGGG
GAGGCACGAACAGTGGATCATGAAAATACCATGACCCAGGTGGGGACTCA
GTTGTTTGTGGCTCCCGAAGTGGTTAGGGGGGAGAGGTATTCGGAGAAGT
GTGATGTGTATTCATTTGCGGTTGTGCTGTTGGCGATGCTGGAGTTGCGG
CCGGAT
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Synonyms
Publications