jgi.p|Nanoce1779_2|555095, mRNA_4344 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|555095
Unique Name	mRNA_4344
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2993
Alignment location	scaffold_10:340850..343978 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	555181
Track	FilteredModels2
ProteinId	555095

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:340850..343978 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555095	gene_4344	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555095	mRNA_4344-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4344	CDS_4344	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:340850..343978+
coding sequence from alignment at scaffold_10:340850..343978+

mRNA sequence

>mRNA_4344 ID=mRNA_4344|Name=jgi.p|Nanoce1779_2|555095|organism=Nannochloropsis oceanica|type=mRNA|length=2993bp
ATGGTGGTCATTCATGATCATTCGGCTCAGATCGTCCCCTCTATCCCTTG
ACGACGCCTTGGCCTTCTCCGACCTGTACATATCTGTGTAGACCGTGTAT
CCGCCCAGAAACTTGATCCTCCTCCCCACCTGCTCCGCCTCCGTGCAAAA
CATCTTCTCGTAATCTACCTGACTTGCCTCGCTCTCGAATGAATGCACCC
CCAACTCGGTCCATGCCTCACCTTCCTCCTGCTGCTTCTTAAACGCGTAA
GAGGTCCGTCGTGCCGCTGCTGCCCTCTCTGACTCCCTCTTTTTGTATTC
AATATGCTGCAGCTTCACCAGTCCACCAACTGCTGCCCCCACAGCCTTGG
TGGCCTCCGTCTCACTTTCCTCTCCTCTTCCTTCGTCCATCCCCACGCCT
GTCTCTGCTGTTGCTACTCCCTCCATGCCTTTCTCCTCCCCCTCCGCCGG
CGCCGCATCCACATGGTCACACGACGCGCGCATTTGATAAATACCCGCTA
AAGGAGTCAAATGCAAGGCCCCATCATGCATAATCCCGAGCCCGTATGTC
GTCATTGGGTCGAGATACGAAGATTGGACCTTGATTCGATCCAGTCTCAA
ATGTCTTGGGGCTTCCTCGTCGAGGTGGGGGGATTCAGGTGGCAAGGCAT
ACTCCAACTCTAATAACTTGTTCTGTGACTTTAATCGCGCGGCGGCCGGC
AGGTCATATGGTCGATAAAAGGGTCGGTTGGGGTACTGGATCACGTGGAG
CTCCTGAGCCAGCTTACTGGAGAGGTAGACAGGTACCTCACGTACCACAG
GGTCGTCCCCATCCTCCTCGTCCAGTCCACCGTCGCCACCGCCCAAGTTC
TTGTCGTCAAAGTCCACGTCGATCAATTGAGGGTTCTTGTCCGGGTTGTC
CTCTTCAAAAGACGATGCCGCCATTTGTGTGGTGTAGCTGCTGCTGCTGC
TGGTGCGACGTGAGATACTTTAAGCTTGTCGATTACCTGTAGAGTCCTGC
TTTCGCTAGTTTTTGTCACCGAAGGAGGGCCTGTCTGTGTGCTGTGTTTA
GGGAGGCGTGATTTGTGAGTGTAAAGGGGTTTCTCGGGTGTTTGTTGGAG
AGGAAGGGGAGGCAGGAGGTCGACACGAGACCTCGGGCATGGGCGACGAG
TGCATGGTGATTGCTTGACCTCGTCGACGCACTAAAAAAGCACACGACCT
TGTGATTCACCACACTACCACGACACCATATTCATAATTTTCCGTACCCT
GTCCATGCAACAGGCAAGCTGAAAGGCCGAGTGGTCTTGATTTTGTATAA
ATCCATCGGTGGCGACCTCCCCAGCACCCTCGATTTGTCGTTTGCCGCCG
TCCGTTCAGCTTGCACACAAGGCGCACACAAGGACACAGTCCGCGTACGT
CTGTTCCTACGTTAGACAGAGCATTATTCAAGGCAGTAAAGTGTACACGC
ATACCCACTACCTCTTCAAATCATGGTCAAGGCCCGGAAGCTTTCACCCC
TGCCCATTTTGGATGAGGCCTCCGTGCGGGCCTTTATGGTGGAGCGCGGC
ATCAAGCACTTGCATGCCCGGCAGATGTGGAAACTGATTTGCAAGTACCG
CCCCGAGCGGTTGGAAGATGTCGATGCGCTGAGCATGAAAGAAATGGGCA
GGCAACTGCCCATGGGCATGATTGCGGCGTTTGCGCAGCAGTTTACCGTG
ACCACGTCCAAGGTGGTGGAGAAGCATGAGAGCAGGGATGGCACGATCAA
ATTGCTGATGGAGCTCCAAGACGGGCAACGAGTGGAGGCCGTGATCATCC
GGCACGATGGCCGTAATACACTGTGTGTCTCCAGTCAGATTGGGTGTCAG
ATGGGCTGCACATTTTGTGCAACTGGCACTATGGGGATCAAAGGAAATTT
GCTGGGGGGGGAGATTTTGGAGCAGTTGTACCATGCGATGGGAGTGGCTC
CGATTCGAAATGTGGTCTTCATGGGCATGGGCGAGCCCCTGCAAAATTAC
AATGCCGTCATGGACTCTGTTCGAGGAATGACAGATGTCAAACGCTTCCG
CCTCTCCCACCATCAAGTCACCATCTCCACGGTCGGGGTTGTGCACGCGA
TAAAGAAAATGTCCGCTGAATTCCCACACCTCAACCTTGCCCTCTCCCTC
CACGCGCCCACTCAAGCCCTGCGACAACAAATCGTCCCATCCGCCAAAGC
CTTTCCCATCGAAAAGCTCCTTGCTGCCTGCTACGAGCACACCCGGGTAT
CTAAAAAACCTCTCTTTGTCGAATACGTCCTCTTGAAAAATGTCAATGAT
CGCCCTGAACACGCCCATGAGCTCGGTGCTCTCCTCGCAGGCCAGACGGT
AATCGTCAACTTAATCCCTTACAATCCTACCGATGTGGCTCACGAATTCG
ATACCCCGGAAGACAATGACGTGGATAACTTTTATCAAATCCTAGTAAAT
GAATATAAGCTTTTGACGACCATTCGTGTGCATCATGGGCGAGAGATTGG
GGGGGCGTGCGGGCAGCTAGCCTTAACTAATCCTGGGAAAGGAAACGGAG
TAGCAGGACCGAAAGGTGCGCCTGCGTTGAATGATATTGAGGACTTGATG
GACGCTGGGAGGGGAGGGAGCAGGGGCAGGGGGGAGAAGGCGTGGGGGAA
GGGGAGTGGGGGTGGGGGGGCGGTTGGTCGAAAGTTGGTGCGCGCAACCA
AGGAGGATGTGAAGAAGGGGACTGGAATTGTAAATGAGGTTGAGGCAATT
GGTGTGGTTGGTAAAAGCATGCGAAAGGAGGTGGAAAAGGAGGGAAAGGC
GGTGAATGGTCACGTCGACGATGAGAATGCACTGAGTCGGAAGCATATGC
CCAGGGAGGTGTCCTGCGGGCGCGCCACGTGGCTGCTCTCCTTGGCGGGT
GCTTCGGTGGCTATGGCTGCGGGATTGGTCATGTTACGGGTAGGTATTAC
CGTATGGGTTGTTAGGGAGGAGAGGAATGGCTGCAAGAGGTAG

protein sequence of jgi.p|Nanoce1779_2|555095

>mRNA_4344-protein ID=mRNA_4344-protein|Name=jgi.p|Nanoce1779_2|555095|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MVKARKLSPLPILDEASVRAFMVERGIKHLHARQMWKLICKYRPERLEDV
DALSMKEMGRQLPMGMIAAFAQQFTVTTSKVVEKHESRDGTIKLLMELQD
GQRVEAVIIRHDGRNTLCVSSQIGCQMGCTFCATGTMGIKGNLLGGEILE
QLYHAMGVAPIRNVVFMGMGEPLQNYNAVMDSVRGMTDVKRFRLSHHQVT
ISTVGVVHAIKKMSAEFPHLNLALSLHAPTQALRQQIVPSAKAFPIEKLL
AACYEHTRVSKKPLFVEYVLLKNVNDRPEHAHELGALLAGQTVIVNLIPY
NPTDVAHEFDTPEDNDVDNFYQILVNEYKLLTTIRVHHGREIGGACGQLA
LTNPGKGNGVAGPKGAPALNDIEDLMDAGRGGSRGRGEKAWGKGSGGGGA
VGRKLVRATKEDVKKGTGIVNEVEAIGVVGKSMRKEVEKEGKAVNGHVDD
ENALSRKHMPREVSCGRATWLLSLAGASVAMAAGLVMLRVGITVWVVREE
RNGCKR*

mRNA from alignment at scaffold_10:340850..343978+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4344 ID=mRNA_4344|Name=jgi.p|Nanoce1779_2|555095|organism=Nannochloropsis oceanica|type=mRNA|length=3129bp|location=Sequence derived from alignment at scaffold_10:340850..343978+ (Nannochloropsis oceanica)
ATGGTGGTCATTCATGATCATTCGGCTCAGATCGTCCCCTCTATCCCTTG
ACGACGCCTTGGCCTTCTCCGACCTGTACATATCTGTGTAGACCGTGTAT
CCGCCCAGAAACTTGATCCTCCTCCCCACCTGCTCCGCCTCCGTGCAAAA
CATCTTCTCGTAATCTACCTGACTTGCCTCGCTCTCGAATGAATGCACCC
CCAACTCGGTCCATGCCTCACCTTCCTCCTGCTGCTTCTTAAACGCGTAA
GAGGTCCGTCGTGCCGCTGCTGCCCTCTCTGACTCCCTCTTTTTGTATTC
AATATGCTGCAGCTTCACCAGTCCACCAACTGCTGCCCCCACAGCCTTGG
TGGCCTCCGTCTCACTTTCCTCTCCTCTTCCTTCGTCCATCCCCACGCCT
GTCTCTGCTGTTGCTACTCCCTCCATGCCTTTCTCCTCCCCCTCCGCCGG
CGCCGCATCCACATGGTCACACGACGCGCGCATTTGATAAATACCCGCTA
AAGGAGTCAAATGCAAGGCCCCATCATGCATAATCCCGAGCCCGTATGTC
GTCATTGGGTCGAGATACGAAGATTGGACCTTGATTCGATCCAGTCTCAA
ATGTCTTGGGGCTTCCTCGTCGAGGTGGGGGGATTCAGGTGGCAAGGCAT
ACTCCAACTCTAATAACTTGTTCTGTGACTTTAATCGCGCGGCGGCCGGC
AGGTCATATGGTCGATAAAAGGGTCGGTTGGGGTACTGGATCACGTGGAG
CTCCTGAGCCAGCTTACTGGAGAGGTAGACAGGTACCTCACGTACCACAG
GGTCGTCCCCATCCTCCTCGTCCAGTCCACCGTCGCCACCGCCCAAGTTC
TTGTCGTCAAAGTCCACGTCGATCAATTGAGGGTTCTTGTCCGGGTTGTC
CTCTTCAAAAGACGATGCCGCCATTTGTGTGGTGTAGCTGCTGCTGCTGC
TGGTGCGACGTGAGATACTTTAAGCTTGTCGATTACCTGTAGAGTCCTGC
TTTCGCTAGTTTTTGTCACCGAAGGAGGGCCTGTCTGTGTGCTGTGTTTA
GGGAGGCGTGATTTGTGAGTGTAAAGGGGTTTCTCGGGTGTTTGTTGGAG
AGGAAGGGGAGGCAGGAGGTCGACACGAGACCTCGGGCATGGGCGACGAG
TGCATGGTGATTGCTTGACCTCGTCGACGCACTAAAAAAGCACACGACCT
TGTGATTCACCACACTACCACGACACCATATTCATAATTTTCCGTACCCT
GTCCATGCAACAGGCAAGCTGAAAGGCCGAGTGGTCTTGATTTTGTATAA
ATCCATCGGTGGCGACCTCCCCAGCACCCTCGATTTGTCGTTTGCCGCCG
TCCGTTCAGCTTGCACACAAGGCGCACACAAGGACACAGTCCGCGTACGT
CTGTTCCTACGTTAGACAGAGCATTATTCAAGGCAGTAAAGTGTACACGC
ATACCCACTACCTCTTCAAATCATGGTCAAGGCCCGGAAGCTTTCACCCC
TGCCCATTTTGGATGAGGCCTCCGTGCGGGCCTTTATGGTGGAGCGCGGC
ATCAAGCACTTGCATGCCCGGCAGATGTGGAAACTGATTTGCAAGTACCG
CCCCGAGCGGTTGGAAGATGTCGATGCGCTGAGCATGAAAGAAATGGGCA
GGCAACTGCCCATGGGCATGATTGCGGCGTTTGCGCAGCAGTTTACCGTG
ACCACGTCCAAGGTGGTGGAGAAGCATGAGAGCAGGGATGGCACGATCAA
ATTGCTGATGGAGCTCCAAGACGGGCAACGAGTGGAGGCCGTGATCATCC
GGCACGATGGCCGTAATACACTGTGTGTCTCCAGTCAGATTGGGTGTCAG
ATGGGCTGCACATTTTGTGCAACTGGCACTATGGGGATCAAAGGAAATTT
GCTGGGGGGGGAGATTTTGGAGCAGTTGTACCATGCGATGGGAGTGGCTC
CGATTCGAAATGTACGTGTGCATGGCAATAGGGTTGAGGTTGTAATAGAT
GATGGGAAAGGAGGTATGGACATGTGTGTTAGAGTGTCGTGTCGATTGAA
TTGCAAGTTGCATCATCCCCTCCTCCGTCCCTCCCTCCCTTCCACAGGTG
GTCTTCATGGGCATGGGCGAGCCCCTGCAAAATTACAATGCCGTCATGGA
CTCTGTTCGAGGAATGACAGATGTCAAACGCTTCCGCCTCTCCCACCATC
AAGTCACCATCTCCACGGTCGGGGTTGTGCACGCGATAAAGAAAATGTCC
GCTGAATTCCCACACCTCAACCTTGCCCTCTCCCTCCACGCGCCCACTCA
AGCCCTGCGACAACAAATCGTCCCATCCGCCAAAGCCTTTCCCATCGAAA
AGCTCCTTGCTGCCTGCTACGAGCACACCCGGGTATCTAAAAAACCTCTC
TTTGTCGAATACGTCCTCTTGAAAAATGTCAATGATCGCCCTGAACACGC
CCATGAGCTCGGTGCTCTCCTCGCAGGCCAGACGGTAATCGTCAACTTAA
TCCCTTACAATCCTACCGATGTGGCTCACGAATTCGATACCCCGGAAGAC
AATGACGTGGATAACTTTTATCAAATCCTAGTAAATGAATATAAGCTTTT
GACGACCATTCGTGTGCATCATGGGCGAGAGATTGGGGGGGCGTGCGGGC
AGCTAGCCTTAACTAATCCTGGGAAAGGAAACGGAGTAGCAGGACCGAAA
GGTGCGCCTGCGTTGAATGATATTGAGGACTTGATGGACGCTGGGAGGGG
AGGGAGCAGGGGCAGGGGGGAGAAGGCGTGGGGGAAGGGGAGTGGGGGTG
GGGGGGCGGTTGGTCGAAAGTTGGTGCGCGCAACCAAGGAGGATGTGAAG
AAGGGGACTGGAATTGTAAATGAGGTTGAGGCAATTGGTGTGGTTGGTAA
AAGCATGCGAAAGGAGGTGGAAAAGGAGGGAAAGGCGGTGAATGGTCACG
TCGACGATGAGAATGCACTGAGTCGGAAGCATATGCCCAGGGAGGTGTCC
TGCGGGCGCGCCACGTGGCTGCTCTCCTTGGCGGGTGCTTCGGTGGCTAT
GGCTGCGGGATTGGTCATGTTACGGGTAGGTATTACCGTATGGGTTGTTA
GGGAGGAGAGGAATGGCTGCAAGAGGTAG

Coding sequence (CDS) from alignment at scaffold_10:340850..343978+

>mRNA_4344 ID=mRNA_4344|Name=jgi.p|Nanoce1779_2|555095|organism=Nannochloropsis oceanica|type=CDS|length=3042bp|location=Sequence derived from alignment at scaffold_10:340850..343978+ (Nannochloropsis oceanica)
ATGGTCAAGGCCCGGAAGCTTTCACCCCTGCCCATTTTGGATGAGGCCTC
CGTGCGGGCCTTTATGGTGGAGCGCGGCATCAAGCACTTGCATGCCCGGC
AGATGTGGAAACTGATTTGCAAGTACCGCCCCGAGCGGTTGGAAGATGTC
GATGCGCTGAGCATGAAAGAAATGGGCAGGCAACTGCCCATGGGCATGAT
TGCGGCGTTTGCGCAGCAGTTTACCGTGACCACGTCCAAGGTGGTGGAGA
AGCATGAGAGCAGGGATGGCACGATCAAATTGCTGATGGAGCTCCAAGAC
GGGCAACGAGTGGAGGCCGTGATCATCCGGCACGATGGCCGTAATACACT
GTGTGTCTCCAGTCAGATTGGGTGTCAGATGGGCTGCACATTTTGTGCAA
CTGGCACTATGGGGATCAAAGGAAATTTGCTGGGGGGGGAGATTTTGGAG
CAGTTGTACCATGCGATGGGAGTGGCTCCGATTCGAAATGTGGTCTTCAT
GGGCATGGGCGAGCCCCTGCAAAATTACAATGCCGTCATGGACTCTGTTC
GAGGAATGACAGATGTCAAACGCTTCCGCCTCTCCCACCATCAAGTCACC
ATCTCCACGGTCGGGGTTGTGCACGCGATAAAGAAAATGTCCGCTGAATT
CCCACACCTCAACCTTGCCCTCTCCCTCCACGCGCCCACTCAAGCCCTGC
GACAACAAATCGTCCCATCCGCCAAAGCCTTTCCCATCGAAAAGCTCCTT
GCTGCCTGCTACGAGCACACCCGGGTATCTAAAAAACCTCTCTTTGTCGA
ATACGTCCTCTTGAAAAATGTCAATGATCGCCCTGAACACGCCCATGAGC
TCGGTGCTCTCCTCGCAGGCCAGACGGTAATCGTCAACTTAATCCCTTAC
AATCCTACCGATGTGGCTCACGAATTCGATACCCCGGAAGACAATGACGT
GGATAACTTTTATCAAATCCTAGTAAATGAATATAAGCTTTTGACGACCA
TTCGTGTGCATCATGGGCGAGAGATTGGGGGGGCGTGCGGGCAGCTAGCC
TTAACTAATCCTGGGAAAGGAAACGGAGTAGCAGGACCGAAAGGTGCGCC
TGCGTTGAATGATATTGAGGACTTGATGGACGCTGGGAGGGGAGGGAGCA
GGGGCAGGGGGGAGAAGGCGTGGGGGAAGGGGAGTGGGGGTGGGGGGGCG
GTTGGTCGAAAGTTGGTGCGCGCAACCAAGGAGGATGTGAAGAAGGGGAC
TGGAATTGTAAATGAGGTTGAGGCAATTGGTGTGGTTGGTAAAAGCATGC
GAAAGGAGGTGGAAAAGGAGGGAAAGGCGGTGAATGGTCACGTCGACGAT
GAGAATGCACTGAGTCGGAAGCATATGCCCAGGGAGGTGTCCTGCGGGCG
CGCCACGTGGCTGCTCTCCTTGGCGGGTGCTTCGGTGGCTATGGCTGCGG
GATTGGTCATGTTACGGGTAGGTATTACCGTATGGGTTGTTAGGGAGGAG
AGGAATGGCTGCAAGAGGTAGATGGTCAAGGCCCGGAAGCTTTCACCCCT
GCCCATTTTGGATGAGGCCTCCGTGCGGGCCTTTATGGTGGAGCGCGGCA
TCAAGCACTTGCATGCCCGGCAGATGTGGAAACTGATTTGCAAGTACCGC
CCCGAGCGGTTGGAAGATGTCGATGCGCTGAGCATGAAAGAAATGGGCAG
GCAACTGCCCATGGGCATGATTGCGGCGTTTGCGCAGCAGTTTACCGTGA
CCACGTCCAAGGTGGTGGAGAAGCATGAGAGCAGGGATGGCACGATCAAA
TTGCTGATGGAGCTCCAAGACGGGCAACGAGTGGAGGCCGTGATCATCCG
GCACGATGGCCGTAATACACTGTGTGTCTCCAGTCAGATTGGGTGTCAGA
TGGGCTGCACATTTTGTGCAACTGGCACTATGGGGATCAAAGGAAATTTG
CTGGGGGGGGAGATTTTGGAGCAGTTGTACCATGCGATGGGAGTGGCTCC
GATTCGAAATGTGGTCTTCATGGGCATGGGCGAGCCCCTGCAAAATTACA
ATGCCGTCATGGACTCTGTTCGAGGAATGACAGATGTCAAACGCTTCCGC
CTCTCCCACCATCAAGTCACCATCTCCACGGTCGGGGTTGTGCACGCGAT
AAAGAAAATGTCCGCTGAATTCCCACACCTCAACCTTGCCCTCTCCCTCC
ACGCGCCCACTCAAGCCCTGCGACAACAAATCGTCCCATCCGCCAAAGCC
TTTCCCATCGAAAAGCTCCTTGCTGCCTGCTACGAGCACACCCGGGTATC
TAAAAAACCTCTCTTTGTCGAATACGTCCTCTTGAAAAATGTCAATGATC
GCCCTGAACACGCCCATGAGCTCGGTGCTCTCCTCGCAGGCCAGACGGTA
ATCGTCAACTTAATCCCTTACAATCCTACCGATGTGGCTCACGAATTCGA
TACCCCGGAAGACAATGACGTGGATAACTTTTATCAAATCCTAGTAAATG
AATATAAGCTTTTGACGACCATTCGTGTGCATCATGGGCGAGAGATTGGG
GGGGCGTGCGGGCAGCTAGCCTTAACTAATCCTGGGAAAGGAAACGGAGT
AGCAGGACCGAAAGGTGCGCCTGCGTTGAATGATATTGAGGACTTGATGG
ACGCTGGGAGGGGAGGGAGCAGGGGCAGGGGGGAGAAGGCGTGGGGGAAG
GGGAGTGGGGGTGGGGGGGCGGTTGGTCGAAAGTTGGTGCGCGCAACCAA
GGAGGATGTGAAGAAGGGGACTGGAATTGTAAATGAGGTTGAGGCAATTG
GTGTGGTTGGTAAAAGCATGCGAAAGGAGGTGGAAAAGGAGGGAAAGGCG
GTGAATGGTCACGTCGACGATGAGAATGCACTGAGTCGGAAGCATATGCC
CAGGGAGGTGTCCTGCGGGCGCGCCACGTGGCTGCTCTCCTTGGCGGGTG
CTTCGGTGGCTATGGCTGCGGGATTGGTCATGTTACGGGTAGGTATTACC
GTATGGGTTGTTAGGGAGGAGAGGAATGGCTGCAAGAGGTAG

Synonyms

Publications