jgi.p|Nanoce1779_2|630216, mRNA_4343 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|630216
Unique NamemRNA_4343
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1914
Alignment locationscaffold_10:340017..342157 -

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Properties
Property NameValue
TranscriptId630302
TrackFilteredModels2
ProteinId630216
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:340017..342157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630216gene_4343Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|630216mRNA_4343-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4343CDS_4343Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4343 ID=mRNA_4343|Name=jgi.p|Nanoce1779_2|630216|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
CGATGGATTTATACAAAATCAAGACCACTCGGCCTTTCAGCTTGCCTGTT
GCATGGACAGGGTACGGAAAATTATGAATATGGTGTCGTGGTAGTGTGGT
GAATCACAAGGTCGTGTGCTTTTTTAGTGCGTCGACGAGGTCAAGCAATC
ACCATGCACTCGTCGCCCATGCCCGAGGTCTCGTGTCGACCTCCTGCCTC
CCCTTCCTCTCCAACAAACACCCGAGAAACCCCTTTACACTCACAAATCA
CGCCTCCCTAAACACAGCACACAGACAGGCCCTCCTTCGGTGACAAAAAC
TAGCGAAAGCAGGACTCTACAGGTAATCGACAAGCTTAAAGTATCTCACG
TCGCACCAGCAGCAGCAGCAGCTACACCACACAAATGGCGGCATCGTCTT
TTGAAGAGGACAACCCGGACAAGAACCCTCAATTGATCGACGTGGACTTT
GACGACAAGAACTTGGGCGGTGGCGACGGTGGACTGGACGAGGAGGATGG
GGACGACCCTGTGGTACGTGAGGTACCTGTCTACCTCTCCAGTAAGCTGG
CTCAGGAGCTCCACGTGATCCAGTACCCCAACCGACCCTTTTATCGACCA
TATGACCTGCCGGCCGCCGCGCGATTAAAGTCACAGAACAAGTTATTAGA
GTTGGAGTATGCCTTGCCACCTGAATCCCCCCACCTCGACGAGGAAGCCC
CAAGACATTTGAGACTGGATCGAATCAAGGTCCAATCTTCGTATCTCGAC
CCAATGACGACATACGGGCTCGGGATTATGCATGATGGGGCCTTGCATTT
GACTCCTTTAGCGGGTATTTATCAAATGCGCGCGTCGTGTGACCATGTGG
ATGCGGCGCCGGCGGAGGGGGAGGAGAAAGGCATGGAGGGAGTAGCAACA
GCAGAGACAGGCGTGGGGATGGACGAAGGAAGAGGAGAGGAAAGTGAGAC
GGAGGCCACCAAGGCTGTGGGGGCAGCAGTTGGTGGACTGGTGAAGCTGC
AGCATATTGAATACAAAAAGAGGGAGTCAGAGAGGGCAGCAGCGGCACGA
CGGACCTCTTACGCGTTTAAGAAGCAGCAGGAGGAAGGTGAGGCATGGAC
CGAGTTGGGGGTGCATTCATTCGAGAGCGAGGCAAGTCAGGTAGATTACG
AGAAGATGTTTTGCACGGAGGCGGAGCAGGTGGGGAGGAGGATCAAGTTT
CTGGGCGGATACACGGTCTACACAGATATGTACAGGTCGGAGAAGGCCAA
GGCGTCGTCAAGGGATAGAGGGGACGATCTGAGCCGAATGATCATGAATG
ACCACCATAACCAGCAGCTATCGGCGGCGTTGTTGAGAGAAAAGATGGAT
GGAAGTGTGACTCAGCAGCAGCAGCTGCTACAGCAATATCTCGACGAGCA
GTACCTGTAGCAGTGACACACGTTATCACTTACAAGATCCAAGCCTACAT
GTTCAATTAGTTGAACACTTGAAAAAATACGCCGTCCTCGTCCGAGGGAA
CTGGGTGCGGAAATCCTCCCTCTACAGCCTCCCTCCCCGGCTCTCCAACG
CACGCGACACCCTGCTCTTGCTGCTGGAAAGATATGGAGGGATCAATCGC
CAACAGTTCTGTACTGCTGCCCGGGTGTCGGACGAGGAGTCCTTGCAGCT
GTTAAAACCTGTGGCATGCTTGGATAAAGAAACGAGGATGTGGGTTGCCG
CTTGTCCGGACGATAGGGCATTTTTGACGGTGTTTTCTGAAGTGGCGCTG
CAGCAGCAGAAGTATTGGAGGGATAAGGAGAAGGAAAAGGACATACAAGT
GATTTTAGCAGCATTGGTCGGGGAGTTTGATTGTCCGTTTCCAGGGCCGG
TGATAGTGGAGAATGCGGGGATTGGAGGCGGAGAAGGAGGGGAAGGAGGG
GGAGGAAAAGGTGG
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protein sequence of jgi.p|Nanoce1779_2|630216

>mRNA_4343-protein ID=mRNA_4343-protein|Name=jgi.p|Nanoce1779_2|630216|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MAASSFEEDNPDKNPQLIDVDFDDKNLGGGDGGLDEEDGDDPVVREVPVY
LSSKLAQELHVIQYPNRPFYRPYDLPAAARLKSQNKLLELEYALPPESPH
LDEEAPRHLRLDRIKVQSSYLDPMTTYGLGIMHDGALHLTPLAGIYQMRA
SCDHVDAAPAEGEEKGMEGVATAETGVGMDEGRGEESETEATKAVGAAVG
GLVKLQHIEYKKRESERAAAARRTSYAFKKQQEEGEAWTELGVHSFESEA
SQVDYEKMFCTEAEQVGRRIKFLGGYTVYTDMYRSEKAKASSRDRGDDLS
RMIMNDHHNQQLSAALLREKMDGSVTQQQQLLQQYLDEQYL*
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mRNA from alignment at scaffold_10:340017..342157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4343 ID=mRNA_4343|Name=jgi.p|Nanoce1779_2|630216|organism=Nannochloropsis oceanica|type=mRNA|length=2141bp|location=Sequence derived from alignment at scaffold_10:340017..342157- (Nannochloropsis oceanica)
CGATGGATTTATACAAAATCAAGACCACTCGGCCTTTCAGCTTGCCTGTT
GCATGGACAGGGTACGGAAAATTATGAATATGGTGTCGTGGTAGTGTGGT
GAATCACAAGGTCGTGTGCTTTTTTAGTGCGTCGACGAGGTCAAGCAATC
ACCATGCACTCGTCGCCCATGCCCGAGGTCTCGTGTCGACCTCCTGCCTC
CCCTTCCTCTCCAACAAACACCCGAGAAACCCCTTTACACTCACAAATCA
CGCCTCCCTAAACACAGCACACAGACAGGCCCTCCTTCGGTGACAAAAAC
TAGCGAAAGCAGGACTCTACAGGTAATCGACAAGCTTAAAGTATCTCACG
TCGCACCAGCAGCAGCAGCAGCTACACCACACAAATGGCGGCATCGTCTT
TTGAAGAGGACAACCCGGACAAGAACCCTCAATTGATCGACGTGGACTTT
GACGACAAGAACTTGGGCGGTGGCGACGGTGGACTGGACGAGGAGGATGG
GGACGACCCTGTGGTACGTGAGGTACCTGTCTACCTCTCCAGTAAGCTGG
CTCAGGAGCTCCACGTGATCCAGTACCCCAACCGACCCTTTTATCGACCA
TATGACCTGCCGGCCGCCGCGCGATTAAAGTCACAGAACAAGTTATTAGA
GTTGGAGTATGCCTTGCCACCTGAATCCCCCCACCTCGACGAGGAAGCCC
CAAGACATTTGAGACTGGATCGAATCAAGGTCCAATCTTCGTATCTCGAC
CCAATGACGACATACGGGCTCGGGATTATGCATGATGGGGCCTTGCATTT
GACTCCTTTAGCGGGTATTTATCAAATGCGCGCGTCGTGTGACCATGTGG
ATGCGGCGCCGGCGGAGGGGGAGGAGAAAGGCATGGAGGGAGTAGCAACA
GCAGAGACAGGCGTGGGGATGGACGAAGGAAGAGGAGAGGAAAGTGAGAC
GGAGGCCACCAAGGCTGTGGGGGCAGCAGTTGGTGGACTGGTGAAGCTGC
AGCATATTGAATACAAAAAGAGGGAGTCAGAGAGGGCAGCAGCGGCACGA
CGGACCTCTTACGCGTTTAAGAAGCAGCAGGAGGAAGGTGAGGCATGGAC
CGAGTTGGGGGTGCATTCATTCGAGAGCGAGGCAAGTCAGGTAGATTACG
AGAAGATGTTTTGCACGGAGGCGGAGCAGGTGGGGAGGAGGATCAAGTTT
CTGGGCGGATACACGGTCTACACAGATATGTACAGGTCGGAGAAGGCCAA
GGCGTCGTCAAGGGATAGAGGGGACGATCTGAGCCGAATGATCATGAATG
ACCACCATAACCAGCAGCTATCGGCGGCGTTGTTGAGAGAAAAGATGGAT
GGAAGTGTGACTGTTGAAGACAAGGCGACGGTGATTGTGGAAGGAGGAGC
TGCTACTGCTACTGCTACTGCTACTGCTACTGCCACTGCTACTGCTGCCG
GTGGAAGAGAGGGGAAGAGATCCGCAGTGATGTCGATTCAGCATCTGAGG
GGCGGGGAACAAGTTGCCGTAATCATGGAGAGGGCGCATGTTGTCTCCCT
GGAGCAGGTGTTGGAGTTGAATGGTGACCATGTTTGCAGCAGCAGCAGCA
GCTGCTACAGCAATATCTCGACGAGCAGTACCTGTAGCAGTGACACACGT
TATCACTTACAAGATCCAAGCCTACATGTTCAATTAGTTGAACACTTGAA
AAAATACGCCGTCCTCGTCCGAGGGAACTGGGTGCGGAAATCCTCCCTCT
ACAGCCTCCCTCCCCGGCTCTCCAACGCACGCGACACCCTGCTCTTGCTG
CTGGAAAGATATGGAGGGATCAATCGCCAACAGTTCTGTACTGCTGCCCG
GGTGTCGGACGAGGAGTCCTTGCAGCTGTTAAAACCTGTGGCATGCTTGG
ATAAAGAAACGAGGATGTGGGTTGCCGCTTGTCCGGACGATAGGGCATTT
TTGACGGTGTTTTCTGAAGTGGCGCTGCAGCAGCAGAAGTATTGGAGGGA
TAAGGAGAAGGAAAAGGACATACAAGTGATTTTAGCAGCATTGGTCGGGG
AGTTTGATTGTCCGTTTCCAGGGCCGGTGATAGTGGAGAATGCGGGGATT
GGAGGCGGAGAAGGAGGGGAAGGAGGGGGAGGAAAAGGTGG
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Coding sequence (CDS) from alignment at scaffold_10:340017..342157-

>mRNA_4343 ID=mRNA_4343|Name=jgi.p|Nanoce1779_2|630216|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_10:340017..342157- (Nannochloropsis oceanica)
CAGCAGCAGCAGCTGCTACAGCAATATCTCGACGAGCAGTACCTGTAGAT
GGCGGCATCGTCTTTTGAAGAGGACAACCCGGACAAGAACCCTCAATTGA
TCGACGTGGACTTTGACGACAAGAACTTGGGCGGTGGCGACGGTGGACTG
GACGAGGAGGATGGGGACGACCCTGTGGTACGTGAGGTACCTGTCTACCT
CTCCAGTAAGCTGGCTCAGGAGCTCCACGTGATCCAGTACCCCAACCGAC
CCTTTTATCGACCATATGACCTGCCGGCCGCCGCGCGATTAAAGTCACAG
AACAAGTTATTAGAGTTGGAGTATGCCTTGCCACCTGAATCCCCCCACCT
CGACGAGGAAGCCCCAAGACATTTGAGACTGGATCGAATCAAGGTCCAAT
CTTCGTATCTCGACCCAATGACGACATACGGGCTCGGGATTATGCATGAT
GGGGCCTTGCATTTGACTCCTTTAGCGGGTATTTATCAAATGCGCGCGTC
GTGTGACCATGTGGATGCGGCGCCGGCGGAGGGGGAGGAGAAAGGCATGG
AGGGAGTAGCAACAGCAGAGACAGGCGTGGGGATGGACGAAGGAAGAGGA
GAGGAAAGTGAGACGGAGGCCACCAAGGCTGTGGGGGCAGCAGTTGGTGG
ACTGGTGAAGCTGCAGCATATTGAATACAAAAAGAGGGAGTCAGAGAGGG
CAGCAGCGGCACGACGGACCTCTTACGCGTTTAAGAAGCAGCAGGAGGAA
GGTGAGGCATGGACCGAGTTGGGGGTGCATTCATTCGAGAGCGAGGCAAG
TCAGGTAGATTACGAGAAGATGTTTTGCACGGAGGCGGAGCAGGTGGGGA
GGAGGATCAAGTTTCTGGGCGGATACACGGTCTACACAGATATGTACAGG
TCGGAGAAGGCCAAGGCGTCGTCAAGGGATAGAGGGGACGATCTGAGCCG
AATGATCATGAATGACCACCATAACCAGCAGCTATCGGCGGCGTTGTTGA
GAGAAAAGATGGATGGAAGTGTGACTCAGCAGCAGCAGCTGCTACAGCAA
TATCTCGACGAGCAGTACCTGTAGATGGCGGCATCGTCTTTTGAAGAGGA
CAACCCGGACAAGAACCCTCAATTGATCGACGTGGACTTTGACGACAAGA
ACTTGGGCGGTGGCGACGGTGGACTGGACGAGGAGGATGGGGACGACCCT
GTGGTACGTGAGGTACCTGTCTACCTCTCCAGTAAGCTGGCTCAGGAGCT
CCACGTGATCCAGTACCCCAACCGACCCTTTTATCGACCATATGACCTGC
CGGCCGCCGCGCGATTAAAGTCACAGAACAAGTTATTAGAGTTGGAGTAT
GCCTTGCCACCTGAATCCCCCCACCTCGACGAGGAAGCCCCAAGACATTT
GAGACTGGATCGAATCAAGGTCCAATCTTCGTATCTCGACCCAATGACGA
CATACGGGCTCGGGATTATGCATGATGGGGCCTTGCATTTGACTCCTTTA
GCGGGTATTTATCAAATGCGCGCGTCGTGTGACCATGTGGATGCGGCGCC
GGCGGAGGGGGAGGAGAAAGGCATGGAGGGAGTAGCAACAGCAGAGACAG
GCGTGGGGATGGACGAAGGAAGAGGAGAGGAAAGTGAGACGGAGGCCACC
AAGGCTGTGGGGGCAGCAGTTGGTGGACTGGTGAAGCTGCAGCATATTGA
ATACAAAAAGAGGGAGTCAGAGAGGGCAGCAGCGGCACGACGGACCTCTT
ACGCGTTTAAGAAGCAGCAGGAGGAAGGTGAGGCATGGACCGAGTTGGGG
GTGCATTCATTCGAGAGCGAGGCAAGTCAGGTAGATTACGAGAAGATGTT
TTGCACGGAGGCGGAGCAGGTGGGGAGGAGGATCAAGTTTCTGGGCGGAT
ACACGGTCTACACAGATATGTACAGGTCGGAGAAGGCCAAGGCGTCGTCA
AGGGATAGAGGGGACGATCTGAGCCGAATGATCATGAATGACCACCATAA
CCAGCAGCTATCGGCGGCGTTGTTGAGAGAAAAGATGGATGGAAGTGTGA
CT
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Synonyms
Publications