jgi.p|Nanoce1779_2|541607, mRNA_4340 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|541607
Unique Name	mRNA_4340
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1774
Alignment location	scaffold_10:333880..335653 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	541693
Track	FilteredModels2
ProteinId	541607

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:333880..335653 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541607	gene_4340	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|541607	mRNA_4340-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4340	CDS_4340	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:333880..335653-
coding sequence from alignment at scaffold_10:333880..335653-

mRNA sequence

>mRNA_4340 ID=mRNA_4340|Name=jgi.p|Nanoce1779_2|541607|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp
AGGAGGACCCACAGAGTCGTCGGGTGAATGACGTGCCGCCGAGCCGTTGA
AGTGCAGTAAGTGTGATATGACCGTGACTGGAGCCGCACCACACCCTCTC
TGCTTCTTTGCTGCGCTTGTACAAATGCTTCTTCTCTCCGTCTCTTCCTG
CCCTTGTGTTTCCAAAGGCCTGGCACCTTTTTTTGATCATTCTCATTGCC
AGCAACGTACACACCACCACAGGAGGTCGCCCCAATCGAAGGAGGCCGCA
CCCAAGACCGCCACACACAGCTATGATTACCTTGACAGAGAGCGAGCTGG
CCTTGCTGGCGGGGGTGAGCGGCTTGGCAGTGTACGCGGCGAAGCAAACG
CCCAAGTGCCCCTTCCACCGCCTCGTCTTTGCCGTTTCCAACGTGGCTGT
GCTTGGGGGAGGGCTCTACATCTTGTGGCGCTCCTGGTCCGAGGCCCCAC
CGCGGTTTGTGCGCTTCTTGACAGCAGCGAAGAAGAGCAAGCAACAACCA
CGCGGCTGTGTGAAGGGAGAAGAAGCGAAGGAGCGAGACCAAGACCCGCG
CGTGGCTGCCGTACTGGGTTTAGTGCGACAGAACATTTTGGAGCTCGAGC
CTTATCGATGTGCGCGGGACGATTACAGCGAGGGCATCCTGCTGGACGCG
AACGAGAATTCGTTCGGCTCGGCATTGCCTCCGGCAGAGCGAACACAGCA
GCTGGAACGGTATCCGGACCCATACCAACAGGAGTTGAAGGAGAAGATTG
GCGCCTACCGTGGCGTGCGGCCGGAGCAGATTTTCGTGGGAGTAGGGAGC
GACGAAGCAATCGATTTGATAATGCGGATTTTTTGCGAGCCCGGGAAGGA
CCGGATTCTGGTGACGCCTCCGACGTATGGCATGTATAAGGTGTCGGCCA
AGACGAATGATGTGGGGATTGTGGCTGTGCCTCTGACGCCTGACTTCTCG
GTGCGAGTGTCAGAAATTCTGCAGGCTGTTGCTTCTACTCCACGAATCAA
GGTCATTTTCTTGTGTTCTCCTGGGAACCCGACCGCGAAGCTCGTACCAT
TGGAGGTGGTAGAACAGGTTTTGAAAGGCGTGGAGGGATGTATGGTAGTG
GTGGATGAGGCGTATGTGGACTTCGCGGATGCCAATGCCGTGAGTGCTTG
TCGGTTGGTTGATCGATACCCAAATTGCCTTGTGCTCCAGACGCTGTCTA
AGGCGTTTGGTCTAGCAGGGATTAGGTGTGGGATGGCCATCGGCCATCCG
GCCGTGATTCAGGTGTTGAACAACGTGAAGGCTCCGTATAATGTGAGTAA
GTTGACGAGCAGCATGGCGCATAAGGCGTTTGAGAGTGGAAATTTGGCGG
TGTTAAAGCAGAATGTCAAGGACATCCTGAAAGAGAAGGAACGGGTGGTG
GAGGCTTTGGGGGGGCTGTCAGTCGTGAAAAAAATTCACCCGTCGGATAC
GAATTTCATCCTGTTTGAGGTGCCCCAGGCGAAAGATATTTACCAGGACA
TGGCGGAGGGCGGGGTGGTGGCGCGGTTTCGCGGGCATGAGTTGCATTGC
AAGGATTGTATTCGGTTGACCATTGGCCAGCCCCATGAGAACGATTCGTT
TCTAGAGTTGTTCAAAAAGACTACGGAGAAGTATTTGGGGAAGTACACGT
AGGGACATTGGTTGAGAGGGTTGGGTAGGATAGGAGAGGTGGCGCCAGCG
GGGGGGTGAGTGGGGGGAAGGCCGCAATGAGACGGTACGTAGTGCGTGCC
GACATCAAAGAATTTTATCAGCAT

protein sequence of jgi.p|Nanoce1779_2|541607

>mRNA_4340-protein ID=mRNA_4340-protein|Name=jgi.p|Nanoce1779_2|541607|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MITLTESELALLAGVSGLAVYAAKQTPKCPFHRLVFAVSNVAVLGGGLYI
LWRSWSEAPPRFVRFLTAAKKSKQQPRGCVKGEEAKERDQDPRVAAVLGL
VRQNILELEPYRCARDDYSEGILLDANENSFGSALPPAERTQQLERYPDP
YQQELKEKIGAYRGVRPEQIFVGVGSDEAIDLIMRIFCEPGKDRILVTPP
TYGMYKVSAKTNDVGIVAVPLTPDFSVRVSEILQAVASTPRIKVIFLCSP
GNPTAKLVPLEVVEQVLKGVEGCMVVVDEAYVDFADANAVSACRLVDRYP
NCLVLQTLSKAFGLAGIRCGMAIGHPAVIQVLNNVKAPYNVSKLTSSMAH
KAFESGNLAVLKQNVKDILKEKERVVEALGGLSVVKKIHPSDTNFILFEV
PQAKDIYQDMAEGGVVARFRGHELHCKDCIRLTIGQPHENDSFLELFKKT
TEKYLGKYT*

mRNA from alignment at scaffold_10:333880..335653-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4340 ID=mRNA_4340|Name=jgi.p|Nanoce1779_2|541607|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp|location=Sequence derived from alignment at scaffold_10:333880..335653- (Nannochloropsis oceanica)
AGGAGGACCCACAGAGTCGTCGGGTGAATGACGTGCCGCCGAGCCGTTGA
AGTGCAGTAAGTGTGATATGACCGTGACTGGAGCCGCACCACACCCTCTC
TGCTTCTTTGCTGCGCTTGTACAAATGCTTCTTCTCTCCGTCTCTTCCTG
CCCTTGTGTTTCCAAAGGCCTGGCACCTTTTTTTGATCATTCTCATTGCC
AGCAACGTACACACCACCACAGGAGGTCGCCCCAATCGAAGGAGGCCGCA
CCCAAGACCGCCACACACAGCTATGATTACCTTGACAGAGAGCGAGCTGG
CCTTGCTGGCGGGGGTGAGCGGCTTGGCAGTGTACGCGGCGAAGCAAACG
CCCAAGTGCCCCTTCCACCGCCTCGTCTTTGCCGTTTCCAACGTGGCTGT
GCTTGGGGGAGGGCTCTACATCTTGTGGCGCTCCTGGTCCGAGGCCCCAC
CGCGGTTTGTGCGCTTCTTGACAGCAGCGAAGAAGAGCAAGCAACAACCA
CGCGGCTGTGTGAAGGGAGAAGAAGCGAAGGAGCGAGACCAAGACCCGCG
CGTGGCTGCCGTACTGGGTTTAGTGCGACAGAACATTTTGGAGCTCGAGC
CTTATCGATGTGCGCGGGACGATTACAGCGAGGGCATCCTGCTGGACGCG
AACGAGAATTCGTTCGGCTCGGCATTGCCTCCGGCAGAGCGAACACAGCA
GCTGGAACGGTATCCGGACCCATACCAACAGGAGTTGAAGGAGAAGATTG
GCGCCTACCGTGGCGTGCGGCCGGAGCAGATTTTCGTGGGAGTAGGGAGC
GACGAAGCAATCGATTTGATAATGCGGATTTTTTGCGAGCCCGGGAAGGA
CCGGATTCTGGTGACGCCTCCGACGTATGGCATGTATAAGGTGTCGGCCA
AGACGAATGATGTGGGGATTGTGGCTGTGCCTCTGACGCCTGACTTCTCG
GTGCGAGTGTCAGAAATTCTGCAGGCTGTTGCTTCTACTCCACGAATCAA
GGTCATTTTCTTGTGTTCTCCTGGGAACCCGACCGCGAAGCTCGTACCAT
TGGAGGTGGTAGAACAGGTTTTGAAAGGCGTGGAGGGATGTATGGTAGTG
GTGGATGAGGCGTATGTGGACTTCGCGGATGCCAATGCCGTGAGTGCTTG
TCGGTTGGTTGATCGATACCCAAATTGCCTTGTGCTCCAGACGCTGTCTA
AGGCGTTTGGTCTAGCAGGGATTAGGTGTGGGATGGCCATCGGCCATCCG
GCCGTGATTCAGGTGTTGAACAACGTGAAGGCTCCGTATAATGTGAGTAA
GTTGACGAGCAGCATGGCGCATAAGGCGTTTGAGAGTGGAAATTTGGCGG
TGTTAAAGCAGAATGTCAAGGACATCCTGAAAGAGAAGGAACGGGTGGTG
GAGGCTTTGGGGGGGCTGTCAGTCGTGAAAAAAATTCACCCGTCGGATAC
GAATTTCATCCTGTTTGAGGTGCCCCAGGCGAAAGATATTTACCAGGACA
TGGCGGAGGGCGGGGTGGTGGCGCGGTTTCGCGGGCATGAGTTGCATTGC
AAGGATTGTATTCGGTTGACCATTGGCCAGCCCCATGAGAACGATTCGTT
TCTAGAGTTGTTCAAAAAGACTACGGAGAAGTATTTGGGGAAGTACACGT
AGGGACATTGGTTGAGAGGGTTGGGTAGGATAGGAGAGGTGGCGCCAGCG
GGGGGGTGAGTGGGGGGAAGGCCGCAATGAGACGGTACGTAGTGCGTGCC
GACATCAAAGAATTTTATCAGCAT

Coding sequence (CDS) from alignment at scaffold_10:333880..335653-

>mRNA_4340 ID=mRNA_4340|Name=jgi.p|Nanoce1779_2|541607|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_10:333880..335653- (Nannochloropsis oceanica)
ATGATTACCTTGACAGAGAGCGAGCTGGCCTTGCTGGCGGGGGTGAGCGG
CTTGGCAGTGTACGCGGCGAAGCAAACGCCCAAGTGCCCCTTCCACCGCC
TCGTCTTTGCCGTTTCCAACGTGGCTGTGCTTGGGGGAGGGCTCTACATC
TTGTGGCGCTCCTGGTCCGAGGCCCCACCGCGGTTTGTGCGCTTCTTGAC
AGCAGCGAAGAAGAGCAAGCAACAACCACGCGGCTGTGTGAAGGGAGAAG
AAGCGAAGGAGCGAGACCAAGACCCGCGCGTGGCTGCCGTACTGGGTTTA
GTGCGACAGAACATTTTGGAGCTCGAGCCTTATCGATGTGCGCGGGACGA
TTACAGCGAGGGCATCCTGCTGGACGCGAACGAGAATTCGTTCGGCTCGG
CATTGCCTCCGGCAGAGCGAACACAGCAGCTGGAACGGTATCCGGACCCA
TACCAACAGGAGTTGAAGGAGAAGATTGGCGCCTACCGTGGCGTGCGGCC
GGAGCAGATTTTCGTGGGAGTAGGGAGCGACGAAGCAATCGATTTGATAA
TGCGGATTTTTTGCGAGCCCGGGAAGGACCGGATTCTGGTGACGCCTCCG
ACGTATGGCATGTATAAGGTGTCGGCCAAGACGAATGATGTGGGGATTGT
GGCTGTGCCTCTGACGCCTGACTTCTCGGTGCGAGTGTCAGAAATTCTGC
AGGCTGTTGCTTCTACTCCACGAATCAAGGTCATTTTCTTGTGTTCTCCT
GGGAACCCGACCGCGAAGCTCGTACCATTGGAGGTGGTAGAACAGGTTTT
GAAAGGCGTGGAGGGATGTATGGTAGTGGTGGATGAGGCGTATGTGGACT
TCGCGGATGCCAATGCCGTGAGTGCTTGTCGGTTGGTTGATCGATACCCA
AATTGCCTTGTGCTCCAGACGCTGTCTAAGGCGTTTGGTCTAGCAGGGAT
TAGGTGTGGGATGGCCATCGGCCATCCGGCCGTGATTCAGGTGTTGAACA
ACGTGAAGGCTCCGTATAATGTGAGTAAGTTGACGAGCAGCATGGCGCAT
AAGGCGTTTGAGAGTGGAAATTTGGCGGTGTTAAAGCAGAATGTCAAGGA
CATCCTGAAAGAGAAGGAACGGGTGGTGGAGGCTTTGGGGGGGCTGTCAG
TCGTGAAAAAAATTCACCCGTCGGATACGAATTTCATCCTGTTTGAGGTG
CCCCAGGCGAAAGATATTTACCAGGACATGGCGGAGGGCGGGGTGGTGGC
GCGGTTTCGCGGGCATGAGTTGCATTGCAAGGATTGTATTCGGTTGACCA
TTGGCCAGCCCCATGAGAACGATTCGTTTCTAGAGTTGTTCAAAAAGACT
ACGGAGAAGTATTTGGGGAAGTACACGTAG

Synonyms

Publications