jgi.p|Nanoce1779_2|242544, mRNA_434 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|242544
Unique NamemRNA_434
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_3:1070547..1072072 +

Link to JBrowse

Properties
Property NameValue
TranscriptId242630
TrackFilteredModels2
ProteinId242544
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1070547..1072072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242544gene_434Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242544mRNA_434-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_434CDS_434Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_434 ID=mRNA_434|Name=jgi.p|Nanoce1779_2|242544|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
CCTCTTCGTATGATGCGAAGCTTGCGCACCGCACACATAGAGCCAGCCCT
ATCTCGATATATAAGCCCTATCTGGCGTAGCAGCTGGACTGGGCGAAGCA
ACCAAGACACGACCCGCGCAAACACGACCAAACCTCCCCACCTCAACCTG
CCTCCCCCCATGCCACAGGCTCCCGTCGAGCTCCGTTGGTTCCCCTTCCA
GCGACTACATGATGACGTCCAGCGGGAGGCTCCTAATGCTATTTCTCTGC
TTCATGCTTCAATTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCC
TGCTGCGGCTGTGTCCAGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGT
CATCAGGGATCGCGCGATTTGGTTCAATCTTGACTATCTCCCGACTCTTG
GCTGCCCCGACCGGGGACGATGAGGAAGATGACGATGAGAATGACGGCTA
CGGTAGTACCAGCGGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTTCTG
TATTTTCCTCGACTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTG
GCAGGGCGCAAAAAGGCGGACAAATCCCTTTTCACCATGCAGCAGTCTGA
AACTCCGCCATCCGATCGGTTTCGCATCGAGGTCGAGACCGCATTACGAG
CCCACGAGCTGGTAAATATCCGCGTGCTCTTCGCTGCTAAAAAGAAAGAG
GCAAAAACTGTCGGGGAGGCTATGGCAGAGGCCGTCAGCGCGGAGTTGGT
GCAAGTGATTGGTCATACCTACCTTCTCTTTAAACCAGGGAACCCTCCAA
GGATAGACATGGTAAGGCTTACCGCGGAGGCTCCTCCTGAGTAGTTGGGT
CCATAGCAGGGAGGATAGGAGACTTCGAATATGCCAAAAAAGTAAATTAA
AGTATTATGCGCATCCCTTTTGCTTATGCATGAAATTGATTTGGTGGTCG
C
back to top

protein sequence of jgi.p|Nanoce1779_2|242544

>mRNA_434-protein ID=mRNA_434-protein|Name=jgi.p|Nanoce1779_2|242544|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MMTSSGRLLMLFLCFMLQLASLVAFAGPAAPAAAVSRSRRGGFMQVASSG
IARFGSILTISRLLAAPTGDDEEDDDENDGYGSTSGRGSAVSSSSVSVFS
STFKGKHRRALRSLAGRKKADKSLFTMQQSETPPSDRFRIEVETALRAHE
LVNIRVLFAAKKKEAKTVGEAMAEAVSAELVQVIGHTYLLFKPGNPPRID
MVRLTAEAPPE*
back to top

mRNA from alignment at scaffold_3:1070547..1072072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_434 ID=mRNA_434|Name=jgi.p|Nanoce1779_2|242544|organism=Nannochloropsis oceanica|type=mRNA|length=1526bp|location=Sequence derived from alignment at scaffold_3:1070547..1072072+ (Nannochloropsis oceanica)
CCTCTTCGTATGATGCGAAGCTTGCGCACCGCACACATAGAGCCAGCCCT
ATCTCGATATATAAGCCCTATCTGGCGTAGCAGCTGGACTGGGCGAAGCA
ACCAAGACACGACCCGCGCAAACACGACCAAACCTCCCCACCTCAACCTG
CCTCCCCCCATGCCACAGGCTCCCGTCGAGCTCCGTTGGTTCCCCTTCCA
GCGACTACATGATGACGTCCAGCGGGAGGCTCCTAATGCTATTTCTCTGC
TTCATGCTTCAATTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCC
TGCTGCGGCTGTGTCCAGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGT
CATCAGGTATGTGTGCATGGGTGGGTGGCATGTGAGATAGCGCAAAGATC
GAGTTTATCGTGAGGTAAGCCACTTACTCAGATGCTTGTTATGTTTACAA
ATTTAGGGATCGCGCGATTTGGTTCAATCTTGACTATCTCCCGACTCTTG
GCTGCCCCGACCGGGGACGATGAGGAAGATGACGATGAGAATGACGGCTA
CGGTAGTACCAGCGGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTTCTG
TATTTTCCTCGACTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTG
GCAGGTACGCGTTGTTTATGGATGCTATTACTACCAGAATTTCTTCTCTG
TATGCTTGCTTATTTCTCTACTCGCTCATTTAGAATGACTGTCATACCCT
TTTGTATTAATTCCTCTTAAGCGCATGTCCTATAACTGGAATGCTTTCAT
CCATAAATGAATCGGCCGTGTTTTCATCTGTCCGCTCGATCCTTGCGGAA
GTACCGAGCCTGCAGATCGTGCACTCACCCGCCTATCCCCTCTCGCCTTG
CCCCTCTCACTGTCTCACATTATTCGTGCGCTATCCATAACGCAGGGCGC
AAAAAGGCGGACAAATCCCTTTTCACCATGCAGCAGTCTGAAACTCCGCC
ATCCGATCGGTTTCGCATCGAGGTCGAGACCGCATTACGAGCCCACGAGC
TGGTTAGTGCGATTGGTTGGATGGGAAAGGGAGGCACGGGGAACCTCTCC
GGACTAGGCAAAGGGAGAAAATAAAAATACTGTGGTAGTCCTACTTAAAT
ATTGCGCGTGCAGACGTCAGTGGCGTTGTGTAAGCGTCTCTCATTTCACA
TTTTCTGTTTTTTGTCTATCGCTCCTCCGCCTGTAGGTAAATATCCGCGT
GCTCTTCGCTGCTAAAAAGAAAGAGGCAAAAACTGTCGGGGAGGCTATGG
CAGAGGCCGTCAGCGCGGAGTTGGTGCAAGTGATTGGTCATACCTACCTT
CTCTTTAAACCAGGGAACCCTCCAAGGATAGACATGGTAAGGCTTACCGC
GGAGGCTCCTCCTGAGTAGTTGGGTCCATAGCAGGGAGGATAGGAGACTT
CGAATATGCCAAAAAAGTAAATTAAAGTATTATGCGCATCCCTTTTGCTT
ATGCATGAAATTGATTTGGTGGTCGC
back to top

Coding sequence (CDS) from alignment at scaffold_3:1070547..1072072+

>mRNA_434 ID=mRNA_434|Name=jgi.p|Nanoce1779_2|242544|organism=Nannochloropsis oceanica|type=CDS|length=2544bp|location=Sequence derived from alignment at scaffold_3:1070547..1072072+ (Nannochloropsis oceanica)
ATGATGACGTCCAGCGGGAGGCTCCTAATGCTATTTCTCTGCTTCATGCT
TCAATTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCCTGCTGCGG
CTGTGTCCAGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGTCATCAGGG
ATCGCGCGATTTGGTTCAATCTTGACTATCTCCCGACTCTTGGCTGCCCC
GACCGGGGACGATGAGGAAGATGACGATGAGAATGACGGCTACGGTAGTA
CCAGCGGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTTCTGTATTTTCC
TCGACTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTGGCAGGGCG
CAAAAAGGCGGACAAATCCCTTTTCACCATGCAGCAGTCTGAAACTCCGC
CATCCGATCGGTTTCGCATCGAGGTCGAGACCGCATTACGAGCCCACGAG
CTGGTAAATATCCGCGTGCTCTTCGCTGCTAAAAAGAAAGAGGCAAAAAC
TGTCGGGGAGGCTATGGCAGAGGCCGTCAGCGCGGAGTTGGTGCAAGTGA
TTGGTCATACCTACCTTCTCTTTAAACCAGGGAACCCTCCAAGGATAGAC
ATGGTAAGGCTTACCGCGGAGGCTCCTCCTGAGTAGATGATGACGTCCAG
CGGGAGGCTCCTAATGCTATTTCTCTGCTTCATGCTTCAATTGGCCAGCT
TGGTGGCCTTCGCGGGACCCGCCGCGCCTGCTGCGGCTGTGTCCAGGTCA
AGACGAGGAGGCTTCATGCAGGTGGCGTCATCAGGGATCGCGCGATTTGG
TTCAATCTTGACTATCTCCCGACTCTTGGCTGCCCCGACCGGGGACGATG
AGGAAGATGACGATGAGAATGACGGCTACGGTAGTACCAGCGGCCGCGGC
AGTGCGGTCTCTTCCTCCTCGGTTTCTGTATTTTCCTCGACTTTCAAGGG
CAAACATCGGCGCGCCCTGCGGTCACTGGCAGGGCGCAAAAAGGCGGACA
AATCCCTTTTCACCATGCAGCAGTCTGAAACTCCGCCATCCGATCGGTTT
CGCATCGAGGTCGAGACCGCATTACGAGCCCACGAGCTGGTAAATATCCG
CGTGCTCTTCGCTGCTAAAAAGAAAGAGGCAAAAACTGTCGGGGAGGCTA
TGGCAGAGGCCGTCAGCGCGGAGTTGGTGCAAGTGATTGGTCATACCTAC
CTTCTCTTTAAACCAGGGAACCCTCCAAGGATAGACATGGTAAGGCTTAC
CGCGGAGGCTCCTCCTGAGTAGATGATGACGTCCAGCGGGAGGCTCCTAA
TGCTATTTCTCTGCTTCATGCTTCAATTGGCCAGCTTGGTGGCCTTCGCG
GGACCCGCCGCGCCTGCTGCGGCTGTGTCCAGGTCAAGACGAGGAGGCTT
CATGCAGGTGGCGTCATCAGGGATCGCGCGATTTGGTTCAATCTTGACTA
TCTCCCGACTCTTGGCTGCCCCGACCGGGGACGATGAGGAAGATGACGAT
GAGAATGACGGCTACGGTAGTACCAGCGGCCGCGGCAGTGCGGTCTCTTC
CTCCTCGGTTTCTGTATTTTCCTCGACTTTCAAGGGCAAACATCGGCGCG
CCCTGCGGTCACTGGCAGGGCGCAAAAAGGCGGACAAATCCCTTTTCACC
ATGCAGCAGTCTGAAACTCCGCCATCCGATCGGTTTCGCATCGAGGTCGA
GACCGCATTACGAGCCCACGAGCTGGTAAATATCCGCGTGCTCTTCGCTG
CTAAAAAGAAAGAGGCAAAAACTGTCGGGGAGGCTATGGCAGAGGCCGTC
AGCGCGGAGTTGGTGCAAGTGATTGGTCATACCTACCTTCTCTTTAAACC
AGGGAACCCTCCAAGGATAGACATGGTAAGGCTTACCGCGGAGGCTCCTC
CTGAGTAGATGATGACGTCCAGCGGGAGGCTCCTAATGCTATTTCTCTGC
TTCATGCTTCAATTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCC
TGCTGCGGCTGTGTCCAGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGT
CATCAGGGATCGCGCGATTTGGTTCAATCTTGACTATCTCCCGACTCTTG
GCTGCCCCGACCGGGGACGATGAGGAAGATGACGATGAGAATGACGGCTA
CGGTAGTACCAGCGGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTTCTG
TATTTTCCTCGACTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTG
GCAGGGCGCAAAAAGGCGGACAAATCCCTTTTCACCATGCAGCAGTCTGA
AACTCCGCCATCCGATCGGTTTCGCATCGAGGTCGAGACCGCATTACGAG
CCCACGAGCTGGTAAATATCCGCGTGCTCTTCGCTGCTAAAAAGAAAGAG
GCAAAAACTGTCGGGGAGGCTATGGCAGAGGCCGTCAGCGCGGAGTTGGT
GCAAGTGATTGGTCATACCTACCTTCTCTTTAAACCAGGGAACCCTCCAA
GGATAGACATGGTAAGGCTTACCGCGGAGGCTCCTCCTGAGTAG
back to top
Synonyms
Publications