jgi.p|Nanoce1779_2|555075, mRNA_4336 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555075
Unique NamemRNA_4336
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length966
Alignment locationscaffold_10:321299..322558 -

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Properties
Property NameValue
TranscriptId555161
TrackFilteredModels2
ProteinId555075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:321299..322558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555075gene_4336Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555075mRNA_4336-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4336CDS_4336Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4336 ID=mRNA_4336|Name=jgi.p|Nanoce1779_2|555075|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGTCATATTCTCATGCACTTGCCCGCTCACCACTTTGGTCCGATCCCTT
CCTTCGTTCATCAAAATCAGGAGGGCTCGCTGGTATGGTCGCTAAAAGCG
TCGTCGCCCCTGTAGACCGCATCAAGATCCTCTTTCAGGTCTCCTCAGAA
GAGTTTTGCCTGCGAAAAGTCCTTCAAATCCTCGCAAGGATCTACCATGA
TGAGGGGTTTTCCGGCCTGTGGAAAGGAAACAGTGCTACGATGCTCCGTG
TTTTCCCCTATGCCGGGATTCAGTTCATGACCTTTGATGCAGTCAAGGCA
AATCTTCTGAAACTGAAAGAGGGTGGGACCCATGGAGGACAGTTGACGAA
CATAGAGAGTTTGTTCGCGGGGTCGTTTGCGGGGTTTGTCTCGTGTTCCT
TCACTTACCCCCTGGACTTTGCACGGGCTCGCTTGGCGGTGGAGGGGGGA
GCGATAAATCATAACGTCTTTGACATCTTTCGGGCCGCGTACAGGGAAGG
GGGAATTTTGTCATTATATAGAGGAATAACGCCGACGTTGCTGGGCATTT
TGCCGTATGCCGGGATTGCCTTTACGATCAATGACAAGGCCAACCATCAG
ATCCATCGATTAACAGGCCACGAGCCGACGACGTTGCAAAAACTGGGTTG
TGGCGCCTTTGCGGGTTTAGCGGCCCAGTCGGCGACATATCCTTTGGATG
TGGTTCGACGACGGATGCAGACAGCGGGGGTGATCATGCGACAGGTATTG
ATGGAGGTGTACAAGCAGGAAGGGATGAAGGGCTTGTTTAAGGGGTTGTC
GATGAATTGGATCAAGGGCCCCGTGGCGTTGGGCATTAGTTTCACCACCT
TTGATTTTTTGAAGCGGTATCTCAATGTACAGCAACCAGAGAAGAAGATG
CCGATATAGCATCGGAGGAAGGGTAGGAAGGGTGGGGATATAGGGGGAAA
GGGAAAGAGAAGAGGG
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protein sequence of jgi.p|Nanoce1779_2|555075

>mRNA_4336-protein ID=mRNA_4336-protein|Name=jgi.p|Nanoce1779_2|555075|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MSYSHALARSPLWSDPFLRSSKSGGLAGMVAKSVVAPVDRIKILFQVSSE
EFCLRKVLQILARIYHDEGFSGLWKGNSATMLRVFPYAGIQFMTFDAVKA
NLLKLKEGGTHGGQLTNIESLFAGSFAGFVSCSFTYPLDFARARLAVEGG
AINHNVFDIFRAAYREGGILSLYRGITPTLLGILPYAGIAFTINDKANHQ
IHRLTGHEPTTLQKLGCGAFAGLAAQSATYPLDVVRRRMQTAGVIMRQVL
MEVYKQEGMKGLFKGLSMNWIKGPVALGISFTTFDFLKRYLNVQQPEKKM
PI*
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mRNA from alignment at scaffold_10:321299..322558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4336 ID=mRNA_4336|Name=jgi.p|Nanoce1779_2|555075|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp|location=Sequence derived from alignment at scaffold_10:321299..322558- (Nannochloropsis oceanica)
ATGTCATATTCTCATGCACTTGCCCGCTCACCACTTTGGTCCGATCCCTT
CCTTCGTTCATCAAAATCAGGAGGGCTCGCTGGTATGGTCGCTAAAAGCG
TCGTCGCCCCTGTAGACCGCATCAAGATCCTCTTTCAGGTCTCCTCAGAA
GAGTTTTGCCTGCGAAAAGTCCTTCAAATCCTCGCAAGGATCTACCATGA
TGAGGGGTTTTCCGGCCTGTGGAAAGGAAACAGTGCTACGATGCTCCGTG
TTTTCCCCTATGCCGGGATTCAGTTCATGACCTTTGATGCAGTCAAGGCA
AATCTTCTGAAACTGAAAGAGGGTGGGACCCATGGAGGACAGTTGACGAA
CATAGAGAGTTTGTTCGCGGGGTCGTTTGCGGGGTTTGTCTCGTGTTCCT
TCACTTACCCCCTGGACTTTGCACGGGCTCGCTTGGCGGTGGAGGGGGTG
CAAGGCGCGCATTATTTGAGACCATCCGTACCGGTGGTGGTGGGAGGAAC
GGCAGGAGCAGCTGTTGCGGGGGCGTCGTCGACGGGAGGAGGAGCAGTGA
GAGGAGGAGGAGGAAGAGGAAGAGAAAAAGGAGGAAAGGGAGCAGGAGGT
AAAGGGAAGGGAGCGATAAATCATAACGTCTTTGACATCTTTCGGGCCGC
GTACAGGGAAGGGGGAATTTTGTCATTATATAGAGGAATAACGCCGACGT
TGCTGGGCATTTTGCCGTATGCCGGGATTGCCTTTACGATCAATGACAAG
GCCAACCATCAGATCCATCGATTAACAGGCCACGAGCCGACGACGTTGCA
AAAACTGGGTTGTGGCGCCTTTGCGGGTTTAGCGGCCCAGTCGGCGACAT
ATCCTTTGGATGTGGTTCGACGACGGATGCAGACAGCGGGGGTGATGTCA
GGTGGTGGTGGTTGTGGTGATAAAGGAGGAGACGGAGGAAAAGGAGGAGT
GAAGGATGGGAATGCACACAATGTTCGACCACCATTGCGACCAACAGCAT
CTCCGGGGCATGATCCGCACACGGCAAGCATGCGACAGGTATTGATGGAG
GTGTACAAGCAGGAAGGGATGAAGGGCTTGTTTAAGGGGTTGTCGATGAA
TTGGATCAAGGGCCCCGTGGCGTTGGGCATTAGTTTCACCACCTTTGATT
TTTTGAAGCGGTATCTCAATGTACAGCAACCAGAGAAGAAGATGCCGATA
TAGCATCGGAGGAAGGGTAGGAAGGGTGGGGATATAGGGGGAAAGGGAAA
GAGAAGAGGG
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Coding sequence (CDS) from alignment at scaffold_10:321299..322558-

>mRNA_4336 ID=mRNA_4336|Name=jgi.p|Nanoce1779_2|555075|organism=Nannochloropsis oceanica|type=CDS|length=2727bp|location=Sequence derived from alignment at scaffold_10:321299..322558- (Nannochloropsis oceanica)
CATGCGACAGGTATTGATGGAGGTGTACAAGCAGGAAGGGATGAAGGGCT
TGTTTAAGGGGTTGTCGATGAATTGGATCAAGGGCCCCGTGGCGTTGGGC
ATTAGTTTCACCACCTTTGATTTTTTGAAGCGGTATCTCAATGTACAGCA
ACCAGAGAAGAAGATGCCGATATAGGGAGCGATAAATCATAACGTCTTTG
ACATCTTTCGGGCCGCGTACAGGGAAGGGGGAATTTTGTCATTATATAGA
GGAATAACGCCGACGTTGCTGGGCATTTTGCCGTATGCCGGGATTGCCTT
TACGATCAATGACAAGGCCAACCATCAGATCCATCGATTAACAGGCCACG
AGCCGACGACGTTGCAAAAACTGGGTTGTGGCGCCTTTGCGGGTTTAGCG
GCCCAGTCGGCGACATATCCTTTGGATGTGGTTCGACGACGGATGCAGAC
AGCGGGGGTGATATGTCATATTCTCATGCACTTGCCCGCTCACCACTTTG
GTCCGATCCCTTCCTTCGTTCATCAAAATCAGGAGGGCTCGCTGGTATGG
TCGCTAAAAGCGTCGTCGCCCCTGTAGACCGCATCAAGATCCTCTTTCAG
GTCTCCTCAGAAGAGTTTTGCCTGCGAAAAGTCCTTCAAATCCTCGCAAG
GATCTACCATGATGAGGGGTTTTCCGGCCTGTGGAAAGGAAACAGTGCTA
CGATGCTCCGTGTTTTCCCCTATGCCGGGATTCAGTTCATGACCTTTGAT
GCAGTCAAGGCAAATCTTCTGAAACTGAAAGAGGGTGGGACCCATGGAGG
ACAGTTGACGAACATAGAGAGTTTGTTCGCGGGGTCGTTTGCGGGGTTTG
TCTCGTGTTCCTTCACTTACCCCCTGGACTTTGCACGGGCTCGCTTGGCG
GTGGAGGGGCATGCGACAGGTATTGATGGAGGTGTACAAGCAGGAAGGGA
TGAAGGGCTTGTTTAAGGGGTTGTCGATGAATTGGATCAAGGGCCCCGTG
GCGTTGGGCATTAGTTTCACCACCTTTGATTTTTTGAAGCGGTATCTCAA
TGTACAGCAACCAGAGAAGAAGATGCCGATATAGGGAGCGATAAATCATA
ACGTCTTTGACATCTTTCGGGCCGCGTACAGGGAAGGGGGAATTTTGTCA
TTATATAGAGGAATAACGCCGACGTTGCTGGGCATTTTGCCGTATGCCGG
GATTGCCTTTACGATCAATGACAAGGCCAACCATCAGATCCATCGATTAA
CAGGCCACGAGCCGACGACGTTGCAAAAACTGGGTTGTGGCGCCTTTGCG
GGTTTAGCGGCCCAGTCGGCGACATATCCTTTGGATGTGGTTCGACGACG
GATGCAGACAGCGGGGGTGATATGTCATATTCTCATGCACTTGCCCGCTC
ACCACTTTGGTCCGATCCCTTCCTTCGTTCATCAAAATCAGGAGGGCTCG
CTGGTATGGTCGCTAAAAGCGTCGTCGCCCCTGTAGACCGCATCAAGATC
CTCTTTCAGGTCTCCTCAGAAGAGTTTTGCCTGCGAAAAGTCCTTCAAAT
CCTCGCAAGGATCTACCATGATGAGGGGTTTTCCGGCCTGTGGAAAGGAA
ACAGTGCTACGATGCTCCGTGTTTTCCCCTATGCCGGGATTCAGTTCATG
ACCTTTGATGCAGTCAAGGCAAATCTTCTGAAACTGAAAGAGGGTGGGAC
CCATGGAGGACAGTTGACGAACATAGAGAGTTTGTTCGCGGGGTCGTTTG
CGGGGTTTGTCTCGTGTTCCTTCACTTACCCCCTGGACTTTGCACGGGCT
CGCTTGGCGGTGGAGGGGCATGCGACAGGTATTGATGGAGGTGTACAAGC
AGGAAGGGATGAAGGGCTTGTTTAAGGGGTTGTCGATGAATTGGATCAAG
GGCCCCGTGGCGTTGGGCATTAGTTTCACCACCTTTGATTTTTTGAAGCG
GTATCTCAATGTACAGCAACCAGAGAAGAAGATGCCGATATAGGGAGCGA
TAAATCATAACGTCTTTGACATCTTTCGGGCCGCGTACAGGGAAGGGGGA
ATTTTGTCATTATATAGAGGAATAACGCCGACGTTGCTGGGCATTTTGCC
GTATGCCGGGATTGCCTTTACGATCAATGACAAGGCCAACCATCAGATCC
ATCGATTAACAGGCCACGAGCCGACGACGTTGCAAAAACTGGGTTGTGGC
GCCTTTGCGGGTTTAGCGGCCCAGTCGGCGACATATCCTTTGGATGTGGT
TCGACGACGGATGCAGACAGCGGGGGTGATATGTCATATTCTCATGCACT
TGCCCGCTCACCACTTTGGTCCGATCCCTTCCTTCGTTCATCAAAATCAG
GAGGGCTCGCTGGTATGGTCGCTAAAAGCGTCGTCGCCCCTGTAGACCGC
ATCAAGATCCTCTTTCAGGTCTCCTCAGAAGAGTTTTGCCTGCGAAAAGT
CCTTCAAATCCTCGCAAGGATCTACCATGATGAGGGGTTTTCCGGCCTGT
GGAAAGGAAACAGTGCTACGATGCTCCGTGTTTTCCCCTATGCCGGGATT
CAGTTCATGACCTTTGATGCAGTCAAGGCAAATCTTCTGAAACTGAAAGA
GGGTGGGACCCATGGAGGACAGTTGACGAACATAGAGAGTTTGTTCGCGG
GGTCGTTTGCGGGGTTTGTCTCGTGTTCCTTCACTTACCCCCTGGACTTT
GCACGGGCTCGCTTGGCGGTGGAGGGG
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Synonyms
Publications