|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 588858 |
| Track | FilteredModels2 |
| ProteinId | 588772 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:319102..320679 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4335 ID=mRNA_4335|Name=jgi.p|Nanoce1779_2|588772|organism=Nannochloropsis oceanica|type=mRNA|length=1289bp
AGTGATAGGCGCCACACAGAGCCTCTTGAACCCCACCATCTCGAGCAACC
ATGCCCCAAATGAGCTGGGAAGAGACGCGGAGCATCATGGCCGAGGTCCA
GGAGCTCTTTGCGGGTCGCGAGGTAAGGCACTAACTGAAGCGCGTGAATG
GGGAGGGAACGCAGTAGGCCTTCGCTCTCTCCCATTATCATGATCATCAG
CCAAAGCAAGAAGTCCACGACACACGAGCGGTGGTATCATGCACTACGGC
CACCCGTCCCCAACGACCTGCGTTCTTCTTCGCGCACCCGTGCTTCCCGC
ACCTTGTCGCGGCCCTTGCCCTCGTCTGCATCCCTGCCGCTCCCTCAATC
CTCTCTCCTCTCTCCCCCATCACCACCTCTCCGCCACAGGATATGAACAC
CGTCGAAGAGATCCGTGCCCTGCAAAAAGAAATGAAGGAAGCTGTGCAAT
CCCGCGAGGCTTCCGCAGCTGCGTGCATCCGCGGGTTGACCGCGGAAGTG
GGCGTGGCTCAAGCAGTGGTGGATGCCTTCCCCGCTGCCCGAGACGCAAG
CAAGGCGCAAAAAGCGGCATTGGAGGGGGAGAAGGAGCATGTGTCCGAGG
TGCTGGCCAGCTTGACTACAGACATAGCGGAGGCGAGGCAGAATGTGGAG
TGTATGGAAGCGGAGCGGATTGATGTGGAGGAGAAGGCGAAGGGGGTGGA
GCACGCGAGCTCAGAGCAGGCCCCGCGGGTATTGCACGCTTTGAGTTTGT
ACGCGAACATAACGGGGATTCGGTGGAAGTACGAGGATGACGAGAACAGC
CACTTGATTCGGGGATTCGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGA
GTTCTCTCTAGACTGCAACAAGGAAAGCACCTTCAAAGTCGCCAATACCA
TTTGGGACATGATCGATCCTTGAGGTTGAAGAAAGAGAGGGAGGGACGGA
AGGAGGGCGCGACGGAAGGAGAGAAGGCGGAGCCGCTACTGATGGATGGG
AGGGATTGGGGAGGAGGACAATGGGCCTGTCTCGCTTTTTGCGAGGTAGT
GAAAGGACTCGGAGAAAAGCTTAAGAAAAAGAAGACTGAAGAAAGAGAGA
ACGAGGGGCGCGGTATGTACGTATGCTTGAGCGTGGGTGAGTGACTGAAC
ACAAGGCAAAAGATGCAAGTCTCTTTCTGTGTGTGCGTGTGTGTTTGTGC
TGTAAAAAGAAAGACGAAAACGAAAACGAAGAGAACATCAAAAGGAACAC
AAAACGGAAGAGCAATAACAAGAAAGAGAAGGAGTGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|588772 >mRNA_4335-protein ID=mRNA_4335-protein|Name=jgi.p|Nanoce1779_2|588772|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MNTVEEIRALQKEMKEAVQSREASAAACIRGLTAEVGVAQAVVDAFPAAR
DASKAQKAALEGEKEHVSEVLASLTTDIAEARQNVECMEAERIDVEEKAK
GVEHASSEQAPRVLHALSLYANITGIRWKYEDDENSHLIRGFVSLPSKDE
VREFSLDCNKESTFKVANTIWDMIDP* back to topmRNA from alignment at scaffold_10:319102..320679- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4335 ID=mRNA_4335|Name=jgi.p|Nanoce1779_2|588772|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at scaffold_10:319102..320679- (Nannochloropsis oceanica)
AGTGATAGGCGCCACACAGAGCCTCTTGAACCCCACCATCTCGAGCAACC
ATGCCCCAAATGAGCTGGGAAGAGACGCGGAGCATCATGGCCGAGGTCCA
GGAGCTCTTTGCGGGTCGCGAGGTAAGGCACTAACTGAAGCGCGTGAATG
GGGAGGGAACGCAGTAGGCCTTCGCTCTCTCCCATTATCATGATCATCAG
CCAAAGCAAGAAGTCCACGACACACGAGCGGTGGTATCATGCACTACGGC
CACCCGTCCCCAACGACCTGCGTTCTTCTTCGCGCACCCGTGCTTCCCGC
ACCTTGTCGCGGCCCTTGCCCTCGTCTGCATCCCTGCCGCTCCCTCAATC
CTCTCTCCTCTCTCCCCCATCACCACCTCTCCGCCACAGGATATGAACAC
CGTCGAAGAGATCCGTGCCCTGCAAAAAGAAATGAAGGAAGCTGTGCAAT
CCCGCGAGGCTTCCGCAGCTGCGTGCATCCGCGGGTTGACCGCGGAAGTG
GGCGTGGCTCAAGCAGTGGTGGATGCCTTCCCCGCTGCCCGAGACGCAAG
CAAGGCGCAAAAAGCGGCATTGGAGGGGGAGAAGGAGCATGTGTCCGAGG
TGCTGGCCAGCTTGACTACAGACATAGCGGAGGCGAGGCAGAATGTGGAG
TGTATGGAAGCGGAGCGGATTGATGTGGAGGAGAAGGCGAAGGGGGTGGA
GCACGCGAGCTCAGAGCAGGCCCCGCGGGTATTGCACGCTTTGAGTTTGT
ACGCGAACATAACGGGGATTCGGTGGAAGTACGAGGATGACGAGAACAGC
CACTTGATTCGGGGATGTGAGTATGGGAGGGATGGGGGGAGGGAGGGAGG
GAGGGAGGGAGGGCGGGAGGTGCATCGTGTGTGTGTGAGAGGGAGTGGGT
ATGGGTGAGAGAGCGTGTGTGTGTATGTGTATATATGCTTGTGCGTTTCC
TGTTCCCACCCCCTACAGTCGTCTTTCTGTCCAGTAAGATGAGATGTGGG
AGTTCCCTAGCCTGCTCCAAGAGGAGCACGTAGAAAGTCGCCGATACCAC
TTCACACTCACCCTTCTTCCCTCCCTCCCTTCCTCCCTCCCTCCCCTGTA
CACAGTCGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGAGTTCTCTCTAG
ACTGCAACAAGGAAAGCACCTTCAAAGTCGCCAATACCATTTGGGACATG
ATCGATCCTTGAGGTTGAAGAAAGAGAGGGAGGGACGGAAGGAGGGCGCG
ACGGAAGGAGAGAAGGCGGAGCCGCTACTGATGGATGGGAGGGATTGGGG
AGGAGGACAATGGGCCTGTCTCGCTTTTTGCGAGGTAGTGAAAGGACTCG
GAGAAAAGCTTAAGAAAAAGAAGACTGAAGAAAGAGAGAACGAGGGGCGC
GGTATGTACGTATGCTTGAGCGTGGGTGAGTGACTGAACACAAGGCAAAA
GATGCAAGTCTCTTTCTGTGTGTGCGTGTGTGTTTGTGCTGTAAAAAGAA
AGACGAAAACGAAAACGAAGAGAACATCAAAAGGAACACAAAACGGAAGA
GCAATAACAAGAAAGAGAAGGAGTGGAG back to topCoding sequence (CDS) from alignment at scaffold_10:319102..320679- >mRNA_4335 ID=mRNA_4335|Name=jgi.p|Nanoce1779_2|588772|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_10:319102..320679- (Nannochloropsis oceanica)
TCGTCTCTCTGCCCAGCAAGGACGAGGTGCGTGAGTTCTCTCTAGACTGC
AACAAGGAAAGCACCTTCAAAGTCGCCAATACCATTTGGGACATGATCGA
TCCTTGAATGAACACCGTCGAAGAGATCCGTGCCCTGCAAAAAGAAATGA
AGGAAGCTGTGCAATCCCGCGAGGCTTCCGCAGCTGCGTGCATCCGCGGG
TTGACCGCGGAAGTGGGCGTGGCTCAAGCAGTGGTGGATGCCTTCCCCGC
TGCCCGAGACGCAAGCAAGGCGCAAAAAGCGGCATTGGAGGGGGAGAAGG
AGCATGTGTCCGAGGTGCTGGCCAGCTTGACTACAGACATAGCGGAGGCG
AGGCAGAATGTGGAGTGTATGGAAGCGGAGCGGATTGATGTGGAGGAGAA
GGCGAAGGGGGTGGAGCACGCGAGCTCAGAGCAGGCCCCGCGGGTATTGC
ACGCTTTGAGTTTGTACGCGAACATAACGGGGATTCGGTGGAAGTACGAG
GATGACGAGAACAGCCACTTGATTCGGGGATTCGTCTCTCTGCCCAGCAA
GGACGAGGTGCGTGAGTTCTCTCTAGACTGCAACAAGGAAAGCACCTTCA
AAGTCGCCAATACCATTTGGGACATGATCGATCCTTGAATGAACACCGTC
GAAGAGATCCGTGCCCTGCAAAAAGAAATGAAGGAAGCTGTGCAATCCCG
CGAGGCTTCCGCAGCTGCGTGCATCCGCGGGTTGACCGCGGAAGTGGGCG
TGGCTCAAGCAGTGGTGGATGCCTTCCCCGCTGCCCGAGACGCAAGCAAG
GCGCAAAAAGCGGCATTGGAGGGGGAGAAGGAGCATGTGTCCGAGGTGCT
GGCCAGCTTGACTACAGACATAGCGGAGGCGAGGCAGAATGTGGAGTGTA
TGGAAGCGGAGCGGATTGATGTGGAGGAGAAGGCGAAGGGGGTGGAGCAC
GCGAGCTCAGAGCAGGCCCCGCGGGTATTGCACGCTTTGAGTTTGTACGC
GAACATAACGGGGATTCGGTGGAAGTACGAGGATGACGAGAACAGCCACT
TGATTCGGGGAT back to top
|