jgi.p|Nanoce1779_2|588769, mRNA_4334 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588769
Unique NamemRNA_4334
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_10:318231..319114 +

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Properties
Property NameValue
TranscriptId588855
TrackFilteredModels2
ProteinId588769
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:318231..319114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588769gene_4334Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588769mRNA_4334-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4334CDS_4334Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4334 ID=mRNA_4334|Name=jgi.p|Nanoce1779_2|588769|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
ACAGGCATGACCTCAAAACAAGAAGCCCACTACGGCGACGTTGCCCAACA
CTACAACCAGGCGTGGTTCTACGAAGATGGCACTGACTACCAACGCTGGC
TTGTGCACAGTCTGATGCAGCGTCTCCAAACGACTCCCAGTATGCGGGTG
GTGGATGTGGGAGGCGGCACAGGCAACTTTAGCGCAGCCTTGCATAAGGA
GTGTATGTTGGGCCAACGTATTCTATGCGTCGATCCGTCGGCGCCCTTGT
TGGTCCAATGCCAGAAGCACGCCGAGTCGGTGGAGCCGCTATTGGCGGAT
GGTCTGGGATTCGTAGCCGAACAAAACCAAGTCTACGACCGGATGCTGCT
CAAAGAAGTAATCCACCATTTTCCACCCGCCGACCTAGGCACCTTATTTG
CAGGTGTTTTCCGACAAATACGTCCGGGGGGGCGCGTTATTATTATGACA
CGCCCCCACGACTCGTCGCATTATCCCTTCTTCCCTGCCGCACACCAGAC
CTGGGCATCTGCCCAACTCCACGAAAGCATCTACGCAAAAGCGATGGAAA
AGGAAGGATTTTCCGTCACGCTAGACCACGCAGATTATCCCGTAGACATG
CCCTTGTCTCGCTGGTTGAATATGGTGAATGGGCGCTTTTGGTCGAACCT
GCATGGGTTTTCTGAGGGGGAGATGAAAGGGGGATTAAAGAAAATTGAGG
ATATGGTTATGGAGGGGAAAGAGAGAGGGATTTGGGTACAGAAGGATAGA
AAGGACGAGGAGGGTGAGGTCACGATAACCTTCCCAGATCGAGTGGTGTT
CATCACGGGTGTTAAGGCATAGGTTGGAGGGGGAAAGGCAGACGAAAAAC
AAAAACAAAATTTAGTGGTCTCTCCACTCCTTCT
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protein sequence of jgi.p|Nanoce1779_2|588769

>mRNA_4334-protein ID=mRNA_4334-protein|Name=jgi.p|Nanoce1779_2|588769|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MTSKQEAHYGDVAQHYNQAWFYEDGTDYQRWLVHSLMQRLQTTPSMRVVD
VGGGTGNFSAALHKECMLGQRILCVDPSAPLLVQCQKHAESVEPLLADGL
GFVAEQNQVYDRMLLKEVIHHFPPADLGTLFAGVFRQIRPGGRVIIMTRP
HDSSHYPFFPAAHQTWASAQLHESIYAKAMEKEGFSVTLDHADYPVDMPL
SRWLNMVNGRFWSNLHGFSEGEMKGGLKKIEDMVMEGKERGIWVQKDRKD
EEGEVTITFPDRVVFITGVKA*
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mRNA from alignment at scaffold_10:318231..319114+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4334 ID=mRNA_4334|Name=jgi.p|Nanoce1779_2|588769|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at scaffold_10:318231..319114+ (Nannochloropsis oceanica)
ACAGGCATGACCTCAAAACAAGAAGCCCACTACGGCGACGTTGCCCAACA
CTACAACCAGGCGTGGTTCTACGAAGATGGCACTGACTACCAACGCTGGC
TTGTGCACAGTCTGATGCAGCGTCTCCAAACGACTCCCAGTATGCGGGTG
GTGGATGTGGGAGGCGGCACAGGCAACTTTAGCGCAGCCTTGCATAAGGA
GTGTATGTTGGGCCAACGTATTCTATGCGTCGATCCGTCGGCGCCCTTGT
TGGTCCAATGCCAGAAGCACGCCGAGTCGGTGGAGCCGCTATTGGCGGAT
GGTCTGGGATTCGTAGCCGAACAAAACCAAGTCTACGACCGGATGCTGCT
CAAAGAAGTAATCCACCATTTTCCACCCGCCGACCTAGGCACCTTATTTG
CAGGTGTTTTCCGACAAATACGTCCGGGGGGGCGCGTTATTATTATGACA
CGCCCCCACGACTCGTCGCATTATCCCTTCTTCCCTGCCGCACACCAGAC
CTGGGCATCTGCCCAACTCCACGAAAGCATCTACGCAAAAGCGATGGAAA
AGGAAGGATTTTCCGTCACGCTAGACCACGCAGATTATCCCGTAGACATG
CCCTTGTCTCGCTGGTTGAATATGGTGAATGGGCGCTTTTGGTCGAACCT
GCATGGGTTTTCTGAGGGGGAGATGAAAGGGGGATTAAAGAAAATTGAGG
ATATGGTTATGGAGGGGAAAGAGAGAGGGATTTGGGTACAGAAGGATAGA
AAGGACGAGGAGGGTGAGGTCACGATAACCTTCCCAGATCGAGTGGTGTT
CATCACGGGTGTTAAGGCATAGGTTGGAGGGGGAAAGGCAGACGAAAAAC
AAAAACAAAATTTAGTGGTCTCTCCACTCCTTCT
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Coding sequence (CDS) from alignment at scaffold_10:318231..319114+

>mRNA_4334 ID=mRNA_4334|Name=jgi.p|Nanoce1779_2|588769|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_10:318231..319114+ (Nannochloropsis oceanica)
ATGACCTCAAAACAAGAAGCCCACTACGGCGACGTTGCCCAACACTACAA
CCAGGCGTGGTTCTACGAAGATGGCACTGACTACCAACGCTGGCTTGTGC
ACAGTCTGATGCAGCGTCTCCAAACGACTCCCAGTATGCGGGTGGTGGAT
GTGGGAGGCGGCACAGGCAACTTTAGCGCAGCCTTGCATAAGGAGTGTAT
GTTGGGCCAACGTATTCTATGCGTCGATCCGTCGGCGCCCTTGTTGGTCC
AATGCCAGAAGCACGCCGAGTCGGTGGAGCCGCTATTGGCGGATGGTCTG
GGATTCGTAGCCGAACAAAACCAAGTCTACGACCGGATGCTGCTCAAAGA
AGTAATCCACCATTTTCCACCCGCCGACCTAGGCACCTTATTTGCAGGTG
TTTTCCGACAAATACGTCCGGGGGGGCGCGTTATTATTATGACACGCCCC
CACGACTCGTCGCATTATCCCTTCTTCCCTGCCGCACACCAGACCTGGGC
ATCTGCCCAACTCCACGAAAGCATCTACGCAAAAGCGATGGAAAAGGAAG
GATTTTCCGTCACGCTAGACCACGCAGATTATCCCGTAGACATGCCCTTG
TCTCGCTGGTTGAATATGGTGAATGGGCGCTTTTGGTCGAACCTGCATGG
GTTTTCTGAGGGGGAGATGAAAGGGGGATTAAAGAAAATTGAGGATATGG
TTATGGAGGGGAAAGAGAGAGGGATTTGGGTACAGAAGGATAGAAAGGAC
GAGGAGGGTGAGGTCACGATAACCTTCCCAGATCGAGTGGTGTTCATCAC
GGGTGTTAAGGCATAG
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Synonyms
Publications