jgi.p|Nanoce1779_2|21526, mRNA_4333 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|21526
Unique Name	mRNA_4333
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1666
Alignment location	scaffold_10:316142..318053 -

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Properties


Property Name	Value
TranscriptId	21612
Track	FilteredModels2
ProteinId	21526

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:316142..318053 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|21526	gene_4333	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|21526	mRNA_4333-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4333	CDS_4333	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:316142..318053-
coding sequence from alignment at scaffold_10:316142..318053-

mRNA sequence

>mRNA_4333 ID=mRNA_4333|Name=jgi.p|Nanoce1779_2|21526|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp
ACTACCCCCAGCACGGCCCACCCACTCCATTTACAGGGGCATACTTTGGT
TGCCGTCGTTACCACGGCGTGAGGCCTCCCTGACATGGTCGACTGCAACC
CCAACAAGTCTCTGTTTTCCCTCTCAATCTCATCTTCTGCCCTCCTGCAC
CGCTCCCCCTCCGGACGTCCCACTACCACCACCACGACGAGCGCTACAGC
ACAGGAGATTTCTATGCCGCCTCCAACCACTGCCATCGTCGCGGAACAGC
AAGCACAGCAGAAGCAGCAACAACAGCAGCAAGCCTTTTGGGGAAACCTG
AAAATCGAGATTGAGCCCCCATACGAAGGAAAACCCCCGGAATGGCACAC
GGAGCAAAGCGACTCCACATCTATCCCCGCCCATCTCTCTTCCAGTAGCT
CTCACTCCGGTTCCGAGACTGATCTCTCCCACTTAGAAGGCAGCATTAGA
GACAACAATTCTCCCACAATGCCTGAGCCTTTCATTGCCAAAAGTTTAGC
TATTACACTGGCCGGCACGTTAGTGTTGGTAGGAATAGCACAGCTTGCGT
TACAGCTCATGTTGTCAGTCAAGATACATTTTCAATCGGCTTGGTGGGGG
GGAGCGTTCTCAGTGCTGGTTGGGAGTTTGGGATTGGCGACGCGGTGGGA
GTGCACGAGGATGACGCATCAGTCGTTGGTAGTGATAGGTATTTTGCTAA
ATGCTGTTGCAGCGGTGCTGGAGACGAGGGCGAGCTCGTTTTTTCATGGT
GAGGAGTTATTTTGTGGTCCTCCTGAGAGAGAGACAGGGGGAGTCGCTAA
TCTGAGTGTGGGCGAATGGTGTGTTTTAGATTTGAATTTGGATCCCCAAA
AACGAACAAAAGGCATAATGTGTGCGTGTATCATCCCGGGAAGGGATCCG
GAATCGAAGGAGGCGTGTGTAGCGTTTCGTGGTTGGGAAGGCCTAAGGGA
GGGAGAGGTGTGTGATGCATCTGCGGAGCATGTGGGGAGGATAATGAATC
TGAGCGTAGCCTTGTGTTGGGCCATGTCAACGATATGCTTATTGACGTGC
CTGGTACGGATAGGGGTAAGATGTCATCAGAGAAAGCATTTGTCTTTCTG
TCGTGTGAATTCGTGGGTATCAAAGGGGTTGGGGAGAAAGAAGAGGAGGT
GGGGACCGACGGTCGTGGCATTTGATCGACGAGCGAGCAGCCGCAGCAGC
AGCAGTGACGAAAGCCACAGCAGCCGCAACAGTATCCGTGATAGCGGCCT
TGCTGCACAGGATAGTGGTGTACGGACGTTGATGGAAGCGGGAGGGACGC
AAGCGCGACATGTACAGTTGCAACAGCAGCAGCAGCAACAGCAGCAGCCC
GGGGGGGAAAGAAAGGGTAAGGGGATGGGGAAAAGGAAGGATGGTTTGAC
TGACCCTTATTACATGCGAGATCAACCGAAAAAAAGGGAAGGAAAAGGAG
GAGGAAGGGGGATAAGAGGGGAGGTGGAAATGGGAGAGGAGGTGGCGGGA
GGAGGAGGAGGAAGAGGAGGAGTAGGAAGAGGAGGAGGCTTTCTGCCTTC
TCCTGTAAATTAGAGTAAAATTGGCTTATGTAGGCACGATATGAGTATGA
GTGTGCGTGTGCATGTACTTTTGTTCAGATAGACTTTATCCGGAGACTAA
TTATTGGATGCATAGG

protein sequence of jgi.p|Nanoce1779_2|21526

>mRNA_4333-protein ID=mRNA_4333-protein|Name=jgi.p|Nanoce1779_2|21526|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MVDCNPNKSLFSLSISSSALLHRSPSGRPTTTTTTSATAQEISMPPPTTA
IVAEQQAQQKQQQQQQAFWGNLKIEIEPPYEGKPPEWHTEQSDSTSIPAH
LSSSSSHSGSETDLSHLEGSIRDNNSPTMPEPFIAKSLAITLAGTLVLVG
IAQLALQLMLSVKIHFQSAWWGGAFSVLVGSLGLATRWECTRMTHQSLVV
IGILLNAVAAVLETRASSFFHGEELFCGPPERETGGVANLSVGEWCVLDL
NLDPQKRTKGIMCACIIPGRDPESKEACVAFRGWEGLREGEVCDASAEHV
GRIMNLSVALCWAMSTICLLTCLVRIGVRCHQRKHLSFCRVNSWVSKGLG
RKKRRWGPTVVAFDRRASSRSSSSDESHSSRNSIRDSGLAAQDSGVRTLM
EAGGTQARHVQLQQQQQQQQQPGGERKGKGMGKRKDGLTDPYYMRDQPKK
REGKGGGRGIRGEVEMGEEVAGGGGGRGGVGRGGGFLPSPVN*

mRNA from alignment at scaffold_10:316142..318053-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4333 ID=mRNA_4333|Name=jgi.p|Nanoce1779_2|21526|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at scaffold_10:316142..318053- (Nannochloropsis oceanica)
ACTACCCCCAGCACGGCCCACCCACTCCATTTACAGGGGCATACTTTGGT
TGCCGTCGTTACCACGGCGTGAGGCCTCCCTGACATGGTCGACTGCAACC
CCAACAAGTCTCTGTTTTCCCTCTCAATCTCATCTTCTGCCCTCCTGCAC
CGCTCCCCCTCCGGACGTCCCACTACCACCACCACGACGAGCGCTACAGC
ACAGGAGATTTCTATGCCGCCTCCAACCACTGCCATCGTCGCGGAACAGC
AAGCACAGCAGAAGCAGCAACAACAGCAGCAAGCCTTTTGGGGAAACCTG
AAAATCGAGGTAAGCCAATGTCTTGATGGGGAGGCGCAACAAGAGAGACA
CAGACATGAAATTCTTGCGCTGACATCTTCTTCATGACAAGCGTCTGGAT
TTTCTCCTCCTTCCATTTAAATCCCTGCTCCTCCACGCCTCCCCCCCACT
CCCTCCTCCCACCAACCACCACTCTTGGGCACAACTCCCCCACCAGCCCA
CCCCATTCTCCCTTTTTCCCATTCCCTTGCCAAAATACAAAATCCAACCC
ATCAGATTGAGCCCCCATACGAAGGAAAACCCCCGGAATGGCACACGGAG
CAAAGCGACTCCACATCTATCCCCGCCCATCTCTCTTCCAGTAGCTCTCA
CTCCGGTTCCGAGACTGATCTCTCCCACTTAGAAGGCAGCATTAGAGACA
ACAATTCTCCCACAATGCCTGAGCCTTTCATTGCCAAAAGTTTAGCTATT
ACACTGGCCGGCACGTTAGTGTTGGTAGGAATAGCACAGCTTGCGTTACA
GCTCATGTTGTCAGTCAAGATACATTTTCAATCGGCTTGGTGGGGGGGAG
CGTTCTCAGTGCTGGTTGGGAGTTTGGGATTGGCGACGCGGTGGGAGTGC
ACGAGGATGACGCATCAGTCGTTGGTAGTGATAGGTATTTTGCTAAATGC
TGTTGCAGCGGTGCTGGAGACGAGGGCGAGCTCGTTTTTTCATGGTGAGG
AGTTATTTTGTGGTCCTCCTGAGAGAGAGACAGGGGGAGTCGCTAATCTG
AGTGTGGGCGAATGGTGTGTTTTAGATTTGAATTTGGATCCCCAAAAACG
AACAAAAGGCATAATGTGTGCGTGTATCATCCCGGGAAGGGATCCGGAAT
CGAAGGAGGCGTGTGTAGCGTTTCGTGGTTGGGAAGGCCTAAGGGAGGGA
GAGGTGTGTGATGCATCTGCGGAGCATGTGGGGAGGATAATGAATCTGAG
CGTAGCCTTGTGTTGGGCCATGTCAACGATATGCTTATTGACGTGCCTGG
TACGGATAGGGGTAAGATGTCATCAGAGAAAGCATTTGTCTTTCTGTCGT
GTGAATTCGTGGGTATCAAAGGGGTTGGGGAGAAAGAAGAGGAGGTGGGG
ACCGACGGTCGTGGCATTTGATCGACGAGCGAGCAGCCGCAGCAGCAGCA
GTGACGAAAGCCACAGCAGCCGCAACAGTATCCGTGATAGCGGCCTTGCT
GCACAGGATAGTGGTGTACGGACGTTGATGGAAGCGGGAGGGACGCAAGC
GCGACATGTACAGTTGCAACAGCAGCAGCAGCAACAGCAGCAGCCCGGGG
GGGAAAGAAAGGGTAAGGGGATGGGGAAAAGGAAGGATGGTTTGACTGAC
CCTTATTACATGCGAGATCAACCGAAAAAAAGGGAAGGAAAAGGAGGAGG
AAGGGGGATAAGAGGGGAGGTGGAAATGGGAGAGGAGGTGGCGGGAGGAG
GAGGAGGAAGAGGAGGAGTAGGAAGAGGAGGAGGCTTTCTGCCTTCTCCT
GTAAATTAGAGTAAAATTGGCTTATGTAGGCACGATATGAGTATGAGTGT
GCGTGTGCATGTACTTTTGTTCAGATAGACTTTATCCGGAGACTAATTAT
TGGATGCATAGG

Coding sequence (CDS) from alignment at scaffold_10:316142..318053-

>mRNA_4333 ID=mRNA_4333|Name=jgi.p|Nanoce1779_2|21526|organism=Nannochloropsis oceanica|type=CDS|length=2958bp|location=Sequence derived from alignment at scaffold_10:316142..318053- (Nannochloropsis oceanica)
ATTGAGCCCCCATACGAAGGAAAACCCCCGGAATGGCACACGGAGCAAAG
CGACTCCACATCTATCCCCGCCCATCTCTCTTCCAGTAGCTCTCACTCCG
GTTCCGAGACTGATCTCTCCCACTTAGAAGGCAGCATTAGAGACAACAAT
TCTCCCACAATGCCTGAGCCTTTCATTGCCAAAAGTTTAGCTATTACACT
GGCCGGCACGTTAGTGTTGGTAGGAATAGCACAGCTTGCGTTACAGCTCA
TGTTGTCAGTCAAGATACATTTTCAATCGGCTTGGTGGGGGGGAGCGTTC
TCAGTGCTGGTTGGGAGTTTGGGATTGGCGACGCGGTGGGAGTGCACGAG
GATGACGCATCAGTCGTTGGTAGTGATAGGTATTTTGCTAAATGCTGTTG
CAGCGGTGCTGGAGACGAGGGCGAGCTCGTTTTTTCATGGTGAGGAGTTA
TTTTGTGGTCCTCCTGAGAGAGAGACAGGGGGAGTCGCTAATCTGAGTGT
GGGCGAATGGTGTGTTTTAGATTTGAATTTGGATCCCCAAAAACGAACAA
AAGGCATAATGTGTGCGTGTATCATCCCGGGAAGGGATCCGGAATCGAAG
GAGGCGTGTGTAGCGTTTCGTGGTTGGGAAGGCCTAAGGGAGGGAGAGGT
GTGTGATGCATCTGCGGAGCATGTGGGGAGGATAATGAATCTGAGCGTAG
CCTTGTGTTGGGCCATGTCAACGATATGCTTATTGACGTGCCTGGTACGG
ATAGGGGTAAGATGTCATCAGAGAAAGCATTTGTCTTTCTGTCGTGTGAA
TTCGTGGGTATCAAAGGGGTTGGGGAGAAAGAAGAGGAGGTGGGGACCGA
CGGTCGTGGCATTTGATCGACGAGCGAGCAGCCGCAGCAGCAGCAGTGAC
GAAAGCCACAGCAGCCGCAACAGTATCCGTGATAGCGGCCTTGCTGCACA
GGATAGTGGTGTACGGACGTTGATGGAAGCGGGAGGGACGCAAGCGCGAC
ATGTACAGTTGCAACAGCAGCAGCAGCAACAGCAGCAGCCCGGGGGGGAA
AGAAAGGGTAAGGGGATGGGGAAAAGGAAGGATGGTTTGACTGACCCTTA
TTACATGCGAGATCAACCGAAAAAAAGGGAAGGAAAAGGAGGAGGAAGGG
GGATAAGAGGGGAGGTGGAAATGGGAGAGGAGGTGGCGGGAGGAGGAGGA
GGAAGAGGAGGAGTAGGAAGAGGAGGAGGCTTTCTGCCTTCTCCTGTAAA
TTAGATGGTCGACTGCAACCCCAACAAGTCTCTGTTTTCCCTCTCAATCT
CATCTTCTGCCCTCCTGCACCGCTCCCCCTCCGGACGTCCCACTACCACC
ACCACGACGAGCGCTACAGCACAGGAGATTTCTATGCCGCCTCCAACCAC
TGCCATCGTCGCGGAACAGCAAGCACAGCAGAAGCAGCAACAACAGCAGC
AAGCCTTTTGGGGAAACCTGAAAATCGAGATTGAGCCCCCATACGAAGGA
AAACCCCCGGAATGGCACACGGAGCAAAGCGACTCCACATCTATCCCCGC
CCATCTCTCTTCCAGTAGCTCTCACTCCGGTTCCGAGACTGATCTCTCCC
ACTTAGAAGGCAGCATTAGAGACAACAATTCTCCCACAATGCCTGAGCCT
TTCATTGCCAAAAGTTTAGCTATTACACTGGCCGGCACGTTAGTGTTGGT
AGGAATAGCACAGCTTGCGTTACAGCTCATGTTGTCAGTCAAGATACATT
TTCAATCGGCTTGGTGGGGGGGAGCGTTCTCAGTGCTGGTTGGGAGTTTG
GGATTGGCGACGCGGTGGGAGTGCACGAGGATGACGCATCAGTCGTTGGT
AGTGATAGGTATTTTGCTAAATGCTGTTGCAGCGGTGCTGGAGACGAGGG
CGAGCTCGTTTTTTCATGGTGAGGAGTTATTTTGTGGTCCTCCTGAGAGA
GAGACAGGGGGAGTCGCTAATCTGAGTGTGGGCGAATGGTGTGTTTTAGA
TTTGAATTTGGATCCCCAAAAACGAACAAAAGGCATAATGTGTGCGTGTA
TCATCCCGGGAAGGGATCCGGAATCGAAGGAGGCGTGTGTAGCGTTTCGT
GGTTGGGAAGGCCTAAGGGAGGGAGAGGTGTGTGATGCATCTGCGGAGCA
TGTGGGGAGGATAATGAATCTGAGCGTAGCCTTGTGTTGGGCCATGTCAA
CGATATGCTTATTGACGTGCCTGGTACGGATAGGGGTAAGATGTCATCAG
AGAAAGCATTTGTCTTTCTGTCGTGTGAATTCGTGGGTATCAAAGGGGTT
GGGGAGAAAGAAGAGGAGGTGGGGACCGACGGTCGTGGCATTTGATCGAC
GAGCGAGCAGCCGCAGCAGCAGCAGTGACGAAAGCCACAGCAGCCGCAAC
AGTATCCGTGATAGCGGCCTTGCTGCACAGGATAGTGGTGTACGGACGTT
GATGGAAGCGGGAGGGACGCAAGCGCGACATGTACAGTTGCAACAGCAGC
AGCAGCAACAGCAGCAGCCCGGGGGGGAAAGAAAGGGTAAGGGGATGGGG
AAAAGGAAGGATGGTTTGACTGACCCTTATTACATGCGAGATCAACCGAA
AAAAAGGGAAGGAAAAGGAGGAGGAAGGGGGATAAGAGGGGAGGTGGAAA
TGGGAGAGGAGGTGGCGGGAGGAGGAGGAGGAAGAGGAGGAGTAGGAAGA
GGAGGAGGCTTTCTGCCTTCTCCTGTAAATTAGATGGTCGACTGCAACCC
CAACAAGTCTCTGTTTTCCCTCTCAATCTCATCTTCTGCCCTCCTGCACC
GCTCCCCCTCCGGACGTCCCACTACCACCACCACGACGAGCGCTACAGCA
CAGGAGATTTCTATGCCGCCTCCAACCACTGCCATCGTCGCGGAACAGCA
AGCACAGCAGAAGCAGCAACAACAGCAGCAAGCCTTTTGGGGAAACCTGA
AAATCGAG

Synonyms

Publications