jgi.p|Nanoce1779_2|588762, mRNA_4332 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588762
Unique NamemRNA_4332
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length642
Alignment locationscaffold_10:315318..316043 +

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Properties
Property NameValue
TranscriptId588848
TrackFilteredModels2
ProteinId588762
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:315318..316043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588762gene_4332Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588762mRNA_4332-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4332CDS_4332Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4332 ID=mRNA_4332|Name=jgi.p|Nanoce1779_2|588762|organism=Nannochloropsis oceanica|type=mRNA|length=642bp
ACAGATTTGTCACCTCAGGACCATGAAGGAAAACGCCAACCCTACCATCT
ACGCTGTTGCGAGCAAGCGCAGGGAGGCCCCTTCCGCTGCGGAGGCCGAG
GGTGACTGGGATGAGATGGCCCGCGACGTATTTACATCTGAGGAAGTCTT
TGAGCTGGTGCGAAACCTGAACGACCCCGAGCATCCCTTGACCCTAGAGC
AACTGAAAGTCGCCACGCTCGAAAACGTCCGTGTGGACGATGCTCACTCC
ACTGTCCGTATCCGATTTACCCCGACCATCCCCCATTGTTCGATGGCAAC
ATTGATTGGCTTGTGCATTCGCGTGAAGCTTTTGCGGTCGTTGCCGCAGC
GGTTCAAGGTCCGCGTTGAGGTCACGCCCGGGGCGCATGCTTCAGAGGCG
GCGGTCAACAAGCAATTAAATGACAAAGAAAGGGTGGCGGCAGCATTGGA
AAACGCGCATTTGCTAGGGGTGGTTAATAAGTGCTTGGAAGAATCGGCGG
ATGTGGCAGCGGCGACGGCGGTGGGGCATTGAGCATACAAGAGACTAGGG
AGGAGGAACGAGGGGACCGTGTGCAGTGTATTATTCACGTGAGAAAGATA
TGGATAAAATGAATGAAATCAAGCAAGACTTGTAAAAGTAAT
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protein sequence of jgi.p|Nanoce1779_2|588762

>mRNA_4332-protein ID=mRNA_4332-protein|Name=jgi.p|Nanoce1779_2|588762|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MKENANPTIYAVASKRREAPSAAEAEGDWDEMARDVFTSEEVFELVRNLN
DPEHPLTLEQLKVATLENVRVDDAHSTVRIRFTPTIPHCSMATLIGLCIR
VKLLRSLPQRFKVRVEVTPGAHASEAAVNKQLNDKERVAAALENAHLLGV
VNKCLEESADVAAATAVGH*
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mRNA from alignment at scaffold_10:315318..316043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4332 ID=mRNA_4332|Name=jgi.p|Nanoce1779_2|588762|organism=Nannochloropsis oceanica|type=mRNA|length=726bp|location=Sequence derived from alignment at scaffold_10:315318..316043+ (Nannochloropsis oceanica)
ACAGATTTGTCACCTCAGGACCATGAAGGAAAACGCCAACCCTACCATCT
ACGCTGTTGCGAGCAAGCGCAGGGTAAGTTCGTACGAGCTCCTCATTCCT
ATCGACCTCCTCCCCTCCTCATCCTCATCACTCCCTACTCTATCTCTACC
CCAACAGGAGGCCCCTTCCGCTGCGGAGGCCGAGGGTGACTGGGATGAGA
TGGCCCGCGACGTATTTACATCTGAGGAAGTCTTTGAGCTGGTGCGAAAC
CTGAACGACCCCGAGCATCCCTTGACCCTAGAGCAACTGAAAGTCGCCAC
GCTCGAAAACGTCCGTGTGGACGATGCTCACTCCACTGTCCGTATCCGAT
TTACCCCGACCATCCCCCATTGTTCGATGGCAACATTGATTGGCTTGTGC
ATTCGCGTGAAGCTTTTGCGGTCGTTGCCGCAGCGGTTCAAGGTCCGCGT
TGAGGTCACGCCCGGGGCGCATGCTTCAGAGGCGGCGGTCAACAAGCAAT
TAAATGACAAAGAAAGGGTGGCGGCAGCATTGGAAAACGCGCATTTGCTA
GGGGTGGTTAATAAGTGCTTGGAAGAATCGGCGGATGTGGCAGCGGCGAC
GGCGGTGGGGCATTGAGCATACAAGAGACTAGGGAGGAGGAACGAGGGGA
CCGTGTGCAGTGTATTATTCACGTGAGAAAGATATGGATAAAATGAATGA
AATCAAGCAAGACTTGTAAAAGTAAT
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Coding sequence (CDS) from alignment at scaffold_10:315318..316043+

>mRNA_4332 ID=mRNA_4332|Name=jgi.p|Nanoce1779_2|588762|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_10:315318..316043+ (Nannochloropsis oceanica)
ATGAAGGAAAACGCCAACCCTACCATCTACGCTGTTGCGAGCAAGCGCAG
GGAGGCCCCTTCCGCTGCGGAGGCCGAGGGTGACTGGGATGAGATGGCCC
GCGACGTATTTACATCTGAGGAAGTCTTTGAGCTGGTGCGAAACCTGAAC
GACCCCGAGCATCCCTTGACCCTAGAGCAACTGAAAGTCGCCACGCTCGA
AAACGTCCGTGTGGACGATGCTCACTCCACTGTCCGTATCCGATTTACCC
CGACCATCCCCCATTGTTCGATGGCAACATTGATTGGCTTGTGCATTCGC
GTGAAGCTTTTGCGGTCGTTGCCGCAGCGGTTCAAGGTCCGCGTTGAGGT
CACGCCCGGGGCGCATGCTTCAGAGGCGGCGGTCAACAAGCAATTAAATG
ACAAAGAAAGGGTGGCGGCAGCATTGGAAAACGCGCATTTGCTAGGGGTG
GTTAATAAGTGCTTGGAAGAATCGGCGGATGTGGCAGCGGCGACGGCGGT
GGGGCATTGAATGAAGGAAAACGCCAACCCTACCATCTACGCTGTTGCGA
GCAAGCGCAGGGAGGCCCCTTCCGCTGCGGAGGCCGAGGGTGACTGGGAT
GAGATGGCCCGCGACGTATTTACATCTGAGGAAGTCTTTGAGCTGGTGCG
AAACCTGAACGACCCCGAGCATCCCTTGACCCTAGAGCAACTGAAAGTCG
CCACGCTCGAAAACGTCCGTGTGGACGATGCTCACTCCACTGTCCGTATC
CGATTTACCCCGACCATCCCCCATTGTTCGATGGCAACATTGATTGGCTT
GTGCATTCGCGTGAAGCTTTTGCGGTCGTTGCCGCAGCGGTTCAAGGTCC
GCGTTGAGGTCACGCCCGGGGCGCATGCTTCAGAGGCGGCGGTCAACAAG
CAATTAAATGACAAAGAAAGGGTGGCGGCAGCATTGGAAAACGCGCATTT
GCTAGGGGTGGTTAATAAGTGCTTGGAAGAATCGGCGGATGTGGCAGCGG
CGACGGCGGTGGGGCATTGA
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Synonyms
Publications