Properties
| Property Name | Value |
|---|
| TranscriptId | 588844 |
| Track | FilteredModels2 |
| ProteinId | 588758 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:312627..315156 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4331 ID=mRNA_4331|Name=jgi.p|Nanoce1779_2|588758|organism=Nannochloropsis oceanica|type=mRNA|length=2300bp
AACAGGCAATGCGTCTCCTTTACGGACTCTTGATGCTCTTTCTAACTCAG
CAGCTTGCCTGTGGCAGCCGGCTTTTCGCAGCGTCAGCCTCAAGGAGGTC
AAGCAGCAGCACTAGGGGAGGTCAACGACGACTCCTGCAGCAGCAGCTAC
AGCGCAGTCTATACACGGCCTTTTTACCAATCTGTAACAGTTTTTACACC
CGATCACGACCCCGAGGCATGCCTTCCCCTACCTCCTCCTCTTCCTCTTC
CTCTTCATCCCCCTCCTCCTCCTCATTCTCCTCCACCTTCTCCTCACCGC
AACATAAGCGCGCGCGCGTCGTCTCATTCTCCACCATCCCTTTCTCTTTT
CCATCCACTGCGACGCTCGACGACGGCAACTTTCGTCAAGCCCTTGCATC
TCAAGTGCGCGAGTCTCTACACGCGGCCTTTGGAGCTGATGCGGAGGGAG
CTGATGCGATGGTCACGCCTGCAACGCGCCCTGAATTTGGAGATTACCAG
TGTAATGCTGCCTTGGCCCTGGCGAAGCGATTAAAAGCCAAGCCGAGAGA
GGTGGCAGAGAAACTAAAGGAAGAGTTGGAAGGACGAACGCAGGAGTGGT
GCGAGCCTTTGGAGATTGCCGGACCGGGATTTATTAATGTCAAGATGAAA
AATGCATTTGTGGAGCAAAAAGTGAATGGTATGCTTTCGGACACGTCGGG
GAGGTTAGGTGTCGCACGGCCCCAGAAACCACAGAAAGTCGTAGTCGATT
TTTCAAGCCCGAACATTGCGAAGGAGATGCATGTGGGGCATTTGAGAAGT
ACGGTTATTGGTGATACGGTTGCTAGGGTGTTGGAGTTCCTTGGTCATGA
CGTGATGAGGTTGAACCATGTGGGTGATTGGGGCACCCAGTTTGGTATGC
TGATTACGCATTTGAAGGAGGCGCACCCCGAGGTATTGGCGGAAGAGGGG
AAGTCGGAGACGGGGATCGGGGACTTGGTGGAGTTCTATAAGGCGGCGAA
GGTGAGGTTTGATGAGGACGAGGAATTTAAGCTGAAGAGTCGACAGGAGG
TGGTGAACCTCCAGGGAGGGAAGGAGGAGACATTAAAAGCGTGGAGGACG
CTGTGTGCTCTCTCGAGAGGCGAGTTTCAAAAGATTTATGATGCACTAGG
GGTGCGGTTGGAGGAGAGGGGGGAAAGTTTTTATAACCCTATGTTGGGCG
ACGTAATCAGCGACCTGGACAAATCGGGTTTGTTGGTTGAGAGCGAGGGG
GCAAGGGTGGTGTTTTTGGATGGATACGTGACCCGAGAAGGAGAACGACA
GCCGTTTATAGTCCAAAAAACGGATGGCGGTTTCTTGTATGCTACGACTG
ATTTGGCGGCGGCGAGACACAGAGCTCTCGAGGAGAAGGCGGAGAGAATC
CTTTATGTAACGGACGCGGGGCAAGCTTCGCATTTTGATCAGGTTTTCCA
AGTGGCCCGTCAAGCCAAGTTCGTCCCGGACAGCGTCCAATTGAAACATG
TTCCGTTCGGCCTAGTCCAGGGGGAGGACGGGAAGAAGTTCAAAACTCGA
GCAGGGGATACCGTCAAGCTTAAGGACCTCCTCGACGAGGCCGTGCGCAT
CGCCCGCGATGATCTCATCAAACGCTCTGAGGAGGGAGGTTACCTTCCCC
CAGATGACCTGGAACAGAGTGCCAAGACAATCGGCCTTGGTGCGGTCAAA
TACGCCGATTTATCCCTTAATCGCGAATCGGATTATAAATTTTCCTACAA
AAAAATGTTGTCCCTAAGTGGGAACACTGCCCCCTACATGCTCTACGCCT
ACGCGCGAATTCAAAGTATTTTGCGCAAAGATATGGGAGGGGAAGATGCC
GGGGCAGCGGCGGCGGCGGGGACTACGACCACGCAGGTGGTGTTGCAGGA
GCCGGCGGAGCTGAACCTGGCTCGGCAGTTGATCAAACTCACCGAACTGT
TACAAAGGGTAGAGGCTGACTTGTACCCGCATGTATTGTGTGAGTACATG
TACGATATCAGTCAAAAATTCAACCAGTTTTATGAAAGCTGCCCCGTCAA
TACGGCTCCGACCCCGGGGCTGGTGCAGTCGCGTAGGACTTTGTGCGCTT
TGACTGCACAGGTCTTGCGCCTGTGTCTGGACTTGTTGGGGATCGAGGTC
TTGCAACGCATGTAAGGCTACCACAATAAGTGTTACTGAGATAGGTGTGT
GTGCACTGAACAAAGAATGAAGCCATAGAGCACACACACTTTGGTGATTA
GAATAAAGACGTTGTTGTGAGGTCAGAACCTCTGAAGAGGCAGCTGCGAA back to topprotein sequence of jgi.p|Nanoce1779_2|588758 >mRNA_4331-protein ID=mRNA_4331-protein|Name=jgi.p|Nanoce1779_2|588758|organism=Nannochloropsis oceanica|type=polypeptide|length=719bp
MRLLYGLLMLFLTQQLACGSRLFAASASRRSSSSTRGGQRRLLQQQLQRS
LYTAFLPICNSFYTRSRPRGMPSPTSSSSSSSSSPSSSSFSSTFSSPQHK
RARVVSFSTIPFSFPSTATLDDGNFRQALASQVRESLHAAFGADAEGADA
MVTPATRPEFGDYQCNAALALAKRLKAKPREVAEKLKEELEGRTQEWCEP
LEIAGPGFINVKMKNAFVEQKVNGMLSDTSGRLGVARPQKPQKVVVDFSS
PNIAKEMHVGHLRSTVIGDTVARVLEFLGHDVMRLNHVGDWGTQFGMLIT
HLKEAHPEVLAEEGKSETGIGDLVEFYKAAKVRFDEDEEFKLKSRQEVVN
LQGGKEETLKAWRTLCALSRGEFQKIYDALGVRLEERGESFYNPMLGDVI
SDLDKSGLLVESEGARVVFLDGYVTREGERQPFIVQKTDGGFLYATTDLA
AARHRALEEKAERILYVTDAGQASHFDQVFQVARQAKFVPDSVQLKHVPF
GLVQGEDGKKFKTRAGDTVKLKDLLDEAVRIARDDLIKRSEEGGYLPPDD
LEQSAKTIGLGAVKYADLSLNRESDYKFSYKKMLSLSGNTAPYMLYAYAR
IQSILRKDMGGEDAGAAAAAGTTTTQVVLQEPAELNLARQLIKLTELLQR
VEADLYPHVLCEYMYDISQKFNQFYESCPVNTAPTPGLVQSRRTLCALTA
QVLRLCLDLLGIEVLQRM* back to topmRNA from alignment at scaffold_10:312627..315156- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4331 ID=mRNA_4331|Name=jgi.p|Nanoce1779_2|588758|organism=Nannochloropsis oceanica|type=mRNA|length=2530bp|location=Sequence derived from alignment at scaffold_10:312627..315156- (Nannochloropsis oceanica)
AACAGGCAATGCGTCTCCTTTACGGACTCTTGATGCTCTTTCTAACTCAG
CAGCTTGCCTGTGGCAGCCGGCTTTTCGCAGCGTCAGCCTCAAGGAGGTC
AAGCAGCAGCACTAGGGGAGGTCAACGACGACTCCTGCAGCAGCAGCTAC
AGCGCAGGTAAATAAATGGGCATAACGGCACGGGATGGACTTCAAAGACA
TACAAATATTTATGTGTTTACATATATTCATATAATGCACGTCGCGTCGG
TGGCCGGCGCGCCAGAGACCTAGAGCGAATCGTTTCTGTCCTATTCCCTG
CAAGCGCCACTCTCCTCCTCCACCAGACAGCTGGAAACGAGTCTTTCGAC
ATGCAGCTCATTCCTTTCTCTCACACATCCCCAGCAGTCTATACACGGCC
TTTTTACCAATCTGTAACAGTTTTTACACCCGATCACGACCCCGAGGCAT
GCCTTCCCCTACCTCCTCCTCTTCCTCTTCCTCTTCATCCCCCTCCTCCT
CCTCATTCTCCTCCACCTTCTCCTCACCGCAACATAAGCGCGCGCGCGTC
GTCTCATTCTCCACCATCCCTTTCTCTTTTCCATCCACTGCGACGCTCGA
CGACGGCAACTTTCGTCAAGCCCTTGCATCTCAAGTGCGCGAGTCTCTAC
ACGCGGCCTTTGGAGCTGATGCGGAGGGAGCTGATGCGATGGTCACGCCT
GCAACGCGCCCTGAATTTGGAGATTACCAGTGTAATGCTGCCTTGGCCCT
GGCGAAGCGATTAAAAGCCAAGCCGAGAGAGGTGGCAGAGAAACTAAAGG
AAGAGTTGGAAGGACGAACGCAGGAGTGGTGCGAGCCTTTGGAGATTGCC
GGACCGGGATTTATTAATGTCAAGATGAAAAATGCATTTGTGGAGCAAAA
AGTGAATGGTATGCTTTCGGACACGTCGGGGAGGTTAGGTGTCGCACGGC
CCCAGAAACCACAGAAAGTCGTAGTCGATTTTTCAAGCCCGAACATTGCG
AAGGAGATGCATGTGGGGCATTTGAGAAGTACGGTTATTGGTGATACGGT
TGCTAGGGTGTTGGAGTTCCTTGGTCATGACGTGATGAGGTTGAACCATG
TGGGTGATTGGGGCACCCAGTTTGGTATGCTGATTACGCATTTGAAGGAG
GCGCACCCCGAGGTATTGGCGGAAGAGGGGAAGTCGGAGACGGGGATCGG
GGACTTGGTGGAGTTCTATAAGGCGGCGAAGGTGAGGTTTGATGAGGACG
AGGAATTTAAGCTGAAGAGTCGACAGGAGGTGGTGAACCTCCAGGGAGGG
AAGGAGGAGACATTAAAAGCGTGGAGGACGCTGTGTGCTCTCTCGAGAGG
CGAGTTTCAAAAGATTTATGATGCACTAGGGGTGCGGTTGGAGGAGAGGG
GGGAAAGTTTTTATAACCCTATGTTGGGCGACGTAATCAGCGACCTGGAC
AAATCGGGTTTGTTGGTTGAGAGCGAGGGGGCAAGGGTGGTGTTTTTGGA
TGGATACGTGACCCGAGAAGGAGAACGACAGCCGTTTATAGTCCAAAAAA
CGGATGGCGGTTTCTTGTATGCTACGACTGATTTGGCGGCGGCGAGACAC
AGAGCTCTCGAGGAGAAGGCGGAGAGAATCCTTTATGTAACGGACGCGGG
GCAAGCTTCGCATTTTGATCAGGTTTTCCAAGTGGCCCGTCAAGCCAAGT
TCGTCCCGGACAGCGTCCAATTGAAACATGTTCCGTTCGGCCTAGTCCAG
GGGGAGGACGGGAAGAAGTTCAAAACTCGAGCAGGGGATACCGTCAAGCT
TAAGGACCTCCTCGACGAGGCCGTGCGCATCGCCCGCGATGATCTCATCA
AACGCTCTGAGGAGGGAGGTTACCTTCCCCCAGATGACCTGGAACAGAGT
GCCAAGACAATCGGCCTTGGTGCGGTCAAATACGCCGATTTATCCCTTAA
TCGCGAATCGGATTATAAATTTTCCTACAAAAAAATGTTGTCCCTAAGTG
GGAACACTGCCCCCTACATGCTCTACGCCTACGCGCGAATTCAAAGTATT
TTGCGCAAAGATATGGGAGGGGAAGATGCCGGGGCAGCGGCGGCGGCGGG
GACTACGACCACGCAGGTGGTGTTGCAGGAGCCGGCGGAGCTGAACCTGG
CTCGGCAGTTGATCAAACTCACCGAACTGTTACAAAGGGTAGAGGCTGAC
TTGTACCCGCATGTATTGTGTGAGTACATGTACGATATCAGTCAAAAATT
CAACCAGTTTTATGAAAGCTGCCCCGTCAATACGGCTCCGACCCCGGGGC
TGGTGCAGTCGCGTAGGACTTTGTGCGCTTTGACTGCACAGGTCTTGCGC
CTGTGTCTGGACTTGTTGGGGATCGAGGTCTTGCAACGCATGTAAGGCTA
CCACAATAAGTGTTACTGAGATAGGTGTGTGTGCACTGAACAAAGAATGA
AGCCATAGAGCACACACACTTTGGTGATTAGAATAAAGACGTTGTTGTGA
GGTCAGAACCTCTGAAGAGGCAGCTGCGAA back to topCoding sequence (CDS) from alignment at scaffold_10:312627..315156- >mRNA_4331 ID=mRNA_4331|Name=jgi.p|Nanoce1779_2|588758|organism=Nannochloropsis oceanica|type=CDS|length=4314bp|location=Sequence derived from alignment at scaffold_10:312627..315156- (Nannochloropsis oceanica)
TCTATACACGGCCTTTTTACCAATCTGTAACAGTTTTTACACCCGATCAC
GACCCCGAGGCATGCCTTCCCCTACCTCCTCCTCTTCCTCTTCCTCTTCA
TCCCCCTCCTCCTCCTCATTCTCCTCCACCTTCTCCTCACCGCAACATAA
GCGCGCGCGCGTCGTCTCATTCTCCACCATCCCTTTCTCTTTTCCATCCA
CTGCGACGCTCGACGACGGCAACTTTCGTCAAGCCCTTGCATCTCAAGTG
CGCGAGTCTCTACACGCGGCCTTTGGAGCTGATGCGGAGGGAGCTGATGC
GATGGTCACGCCTGCAACGCGCCCTGAATTTGGAGATTACCAGTGTAATG
CTGCCTTGGCCCTGGCGAAGCGATTAAAAGCCAAGCCGAGAGAGGTGGCA
GAGAAACTAAAGGAAGAGTTGGAAGGACGAACGCAGGAGTGGTGCGAGCC
TTTGGAGATTGCCGGACCGGGATTTATTAATGTCAAGATGAAAAATGCAT
TTGTGGAGCAAAAAGTGAATGGTATGCTTTCGGACACGTCGGGGAGGTTA
GGTGTCGCACGGCCCCAGAAACCACAGAAAGTCGTAGTCGATTTTTCAAG
CCCGAACATTGCGAAGGAGATGCATGTGGGGCATTTGAGAAGTACGGTTA
TTGGTGATACGGTTGCTAGGGTGTTGGAGTTCCTTGGTCATGACGTGATG
AGGTTGAACCATGTGGGTGATTGGGGCACCCAGTTTGGTATGCTGATTAC
GCATTTGAAGGAGGCGCACCCCGAGGTATTGGCGGAAGAGGGGAAGTCGG
AGACGGGGATCGGGGACTTGGTGGAGTTCTATAAGGCGGCGAAGGTGAGG
TTTGATGAGGACGAGGAATTTAAGCTGAAGAGTCGACAGGAGGTGGTGAA
CCTCCAGGGAGGGAAGGAGGAGACATTAAAAGCGTGGAGGACGCTGTGTG
CTCTCTCGAGAGGCGAGTTTCAAAAGATTTATGATGCACTAGGGGTGCGG
TTGGAGGAGAGGGGGGAAAGTTTTTATAACCCTATGTTGGGCGACGTAAT
CAGCGACCTGGACAAATCGGGTTTGTTGGTTGAGAGCGAGGGGGCAAGGG
TGGTGTTTTTGGATGGATACGTGACCCGAGAAGGAGAACGACAGCCGTTT
ATAGTCCAAAAAACGGATGGCGGTTTCTTGTATGCTACGACTGATTTGGC
GGCGGCGAGACACAGAGCTCTCGAGGAGAAGGCGGAGAGAATCCTTTATG
TAACGGACGCGGGGCAAGCTTCGCATTTTGATCAGGTTTTCCAAGTGGCC
CGTCAAGCCAAGTTCGTCCCGGACAGCGTCCAATTGAAACATGTTCCGTT
CGGCCTAGTCCAGGGGGAGGACGGGAAGAAGTTCAAAACTCGAGCAGGGG
ATACCGTCAAGCTTAAGGACCTCCTCGACGAGGCCGTGCGCATCGCCCGC
GATGATCTCATCAAACGCTCTGAGGAGGGAGGTTACCTTCCCCCAGATGA
CCTGGAACAGAGTGCCAAGACAATCGGCCTTGGTGCGGTCAAATACGCCG
ATTTATCCCTTAATCGCGAATCGGATTATAAATTTTCCTACAAAAAAATG
TTGTCCCTAAGTGGGAACACTGCCCCCTACATGCTCTACGCCTACGCGCG
AATTCAAAGTATTTTGCGCAAAGATATGGGAGGGGAAGATGCCGGGGCAG
CGGCGGCGGCGGGGACTACGACCACGCAGGTGGTGTTGCAGGAGCCGGCG
GAGCTGAACCTGGCTCGGCAGTTGATCAAACTCACCGAACTGTTACAAAG
GGTAGAGGCTGACTTGTACCCGCATGTATTGTGTGAGTACATGTACGATA
TCAGTCAAAAATTCAACCAGTTTTATGAAAGCTGCCCCGTCAATACGGCT
CCGACCCCGGGGCTGGTGCAGTCGCGTAGGACTTTGTGCGCTTTGACTGC
ACAGGTCTTGCGCCTGTGTCTGGACTTGTTGGGGATCGAGGTCTTGCAAC
GCATGTAAATGCGTCTCCTTTACGGACTCTTGATGCTCTTTCTAACTCAG
CAGCTTGCCTGTGGCAGCCGGCTTTTCGCAGCGTCAGCCTCAAGGAGGTC
AAGCAGCAGCACTAGGGGAGGTCAACGACGACTCCTGCAGCAGCAGCTAC
AGCGCAGTCTATACACGGCCTTTTTACCAATCTGTAACAGTTTTTACACC
CGATCACGACCCCGAGGCATGCCTTCCCCTACCTCCTCCTCTTCCTCTTC
CTCTTCATCCCCCTCCTCCTCCTCATTCTCCTCCACCTTCTCCTCACCGC
AACATAAGCGCGCGCGCGTCGTCTCATTCTCCACCATCCCTTTCTCTTTT
CCATCCACTGCGACGCTCGACGACGGCAACTTTCGTCAAGCCCTTGCATC
TCAAGTGCGCGAGTCTCTACACGCGGCCTTTGGAGCTGATGCGGAGGGAG
CTGATGCGATGGTCACGCCTGCAACGCGCCCTGAATTTGGAGATTACCAG
TGTAATGCTGCCTTGGCCCTGGCGAAGCGATTAAAAGCCAAGCCGAGAGA
GGTGGCAGAGAAACTAAAGGAAGAGTTGGAAGGACGAACGCAGGAGTGGT
GCGAGCCTTTGGAGATTGCCGGACCGGGATTTATTAATGTCAAGATGAAA
AATGCATTTGTGGAGCAAAAAGTGAATGGTATGCTTTCGGACACGTCGGG
GAGGTTAGGTGTCGCACGGCCCCAGAAACCACAGAAAGTCGTAGTCGATT
TTTCAAGCCCGAACATTGCGAAGGAGATGCATGTGGGGCATTTGAGAAGT
ACGGTTATTGGTGATACGGTTGCTAGGGTGTTGGAGTTCCTTGGTCATGA
CGTGATGAGGTTGAACCATGTGGGTGATTGGGGCACCCAGTTTGGTATGC
TGATTACGCATTTGAAGGAGGCGCACCCCGAGGTATTGGCGGAAGAGGGG
AAGTCGGAGACGGGGATCGGGGACTTGGTGGAGTTCTATAAGGCGGCGAA
GGTGAGGTTTGATGAGGACGAGGAATTTAAGCTGAAGAGTCGACAGGAGG
TGGTGAACCTCCAGGGAGGGAAGGAGGAGACATTAAAAGCGTGGAGGACG
CTGTGTGCTCTCTCGAGAGGCGAGTTTCAAAAGATTTATGATGCACTAGG
GGTGCGGTTGGAGGAGAGGGGGGAAAGTTTTTATAACCCTATGTTGGGCG
ACGTAATCAGCGACCTGGACAAATCGGGTTTGTTGGTTGAGAGCGAGGGG
GCAAGGGTGGTGTTTTTGGATGGATACGTGACCCGAGAAGGAGAACGACA
GCCGTTTATAGTCCAAAAAACGGATGGCGGTTTCTTGTATGCTACGACTG
ATTTGGCGGCGGCGAGACACAGAGCTCTCGAGGAGAAGGCGGAGAGAATC
CTTTATGTAACGGACGCGGGGCAAGCTTCGCATTTTGATCAGGTTTTCCA
AGTGGCCCGTCAAGCCAAGTTCGTCCCGGACAGCGTCCAATTGAAACATG
TTCCGTTCGGCCTAGTCCAGGGGGAGGACGGGAAGAAGTTCAAAACTCGA
GCAGGGGATACCGTCAAGCTTAAGGACCTCCTCGACGAGGCCGTGCGCAT
CGCCCGCGATGATCTCATCAAACGCTCTGAGGAGGGAGGTTACCTTCCCC
CAGATGACCTGGAACAGAGTGCCAAGACAATCGGCCTTGGTGCGGTCAAA
TACGCCGATTTATCCCTTAATCGCGAATCGGATTATAAATTTTCCTACAA
AAAAATGTTGTCCCTAAGTGGGAACACTGCCCCCTACATGCTCTACGCCT
ACGCGCGAATTCAAAGTATTTTGCGCAAAGATATGGGAGGGGAAGATGCC
GGGGCAGCGGCGGCGGCGGGGACTACGACCACGCAGGTGGTGTTGCAGGA
GCCGGCGGAGCTGAACCTGGCTCGGCAGTTGATCAAACTCACCGAACTGT
TACAAAGGGTAGAGGCTGACTTGTACCCGCATGTATTGTGTGAGTACATG
TACGATATCAGTCAAAAATTCAACCAGTTTTATGAAAGCTGCCCCGTCAA
TACGGCTCCGACCCCGGGGCTGGTGCAGTCGCGTAGGACTTTGTGCGCTT
TGACTGCACAGGTCTTGCGCCTGTGTCTGGACTTGTTGGGGATCGAGGTC
TTGCAACGCATGTAAATGCGTCTCCTTTACGGACTCTTGATGCTCTTTCT
AACTCAGCAGCTTGCCTGTGGCAGCCGGCTTTTCGCAGCGTCAGCCTCAA
GGAGGTCAAGCAGCAGCACTAGGGGAGGTCAACGACGACTCCTGCAGCAG
CAGCTACAGCGCAG back to top
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