jgi.p|Nanoce1779_2|623207, mRNA_4330 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623207
Unique NamemRNA_4330
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length798
Alignment locationscaffold_10:311344..312217 -

Link to JBrowse

Properties
Property NameValue
TranscriptId623293
TrackFilteredModels2
ProteinId623207
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:311344..312217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623207gene_4330Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623207mRNA_4330-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4330CDS_4330Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4330 ID=mRNA_4330|Name=jgi.p|Nanoce1779_2|623207|organism=Nannochloropsis oceanica|type=mRNA|length=798bp
ATGAACCTCGACAACCCGCTTGGCAGCGGCAGTGGCAAAAGTACGCCTCG
CGGGCCCGGGTATTATGATCCCTCTACTCTAAGCGAGGATGAGCGACGCA
TCGCCACGGAGCTCTCGACGGCTTTGGCCACCACCACCTACGAGATTCGG
GATAAATTGTCTGAGGTGATGCCGGGCCTCTTTCTATCCAATGGCCAGGT
TGCTCAAGACTTGCCCATGCTCCGGGCGCAACGCATATCCCACGTCCTTA
ATATGGCGCCAGTTGAAGTGCCCACCACTGCCGAGTTCTACGCGGAGGAC
AAAATGGACTTTAAGGCCATTGTGGCCAAGGACGAGTTTGACTACGACGT
CATGCAGCATTGGCCCGAGGCCCGTGCCTACATCGATGCCGCTCTCAACG
AACAAAACGGCCGAGTCCTCGTCCACTGCCAAGCAGGAATCAACCGCTCG
GGGGCCATCGCTGTGGCCTATATGATGGTGACACGACGACGGCAACTCGT
GGATGCCGCGAAGTCCGCCAAGCGAAAACGATACCTGCTGATTACCAACC
TGAATTTCCAGCTCTCCTTGGTCAAGTTTGCCTCGGCCGAAGGTCTTTTG
GGTAAGCCGGCTTTACCTCGCCGAGTGTCTTCCCCGAACCCGTACCCGGG
CTCTCCCATTGCCACAGATGAATTTAAATCAACCCGCTGGCCGTTTGGGT
GTAAGGGTAAGCCAGCCGTCTTGTTTTTGCATGGGACCTTCGCGCCTGTC
CATCACGGGCATATGGCAGCGTTGAAGTGGAGGCAATGTCGCACTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|623207

>mRNA_4330-protein ID=mRNA_4330-protein|Name=jgi.p|Nanoce1779_2|623207|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MNLDNPLGSGSGKSTPRGPGYYDPSTLSEDERRIATELSTALATTTYEIR
DKLSEVMPGLFLSNGQVAQDLPMLRAQRISHVLNMAPVEVPTTAEFYAED
KMDFKAIVAKDEFDYDVMQHWPEARAYIDAALNEQNGRVLVHCQAGINRS
GAIAVAYMMVTRRRQLVDAAKSAKRKRYLLITNLNFQLSLVKFASAEGLL
GKPALPRRVSSPNPYPGSPIATDEFKSTRWPFGCKGKPAVLFLHGTFAPV
HHGHMAALKWRQCRT*
back to top

mRNA from alignment at scaffold_10:311344..312217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4330 ID=mRNA_4330|Name=jgi.p|Nanoce1779_2|623207|organism=Nannochloropsis oceanica|type=mRNA|length=874bp|location=Sequence derived from alignment at scaffold_10:311344..312217- (Nannochloropsis oceanica)
ATGAACCTCGACAACCCGCTTGGCAGCGGCAGTGGCAAAAGTACGCCTCG
CGGGCCCGGGTATTATGATCCCTCTACTCTAAGCGAGGATGAGCGACGCA
TCGCCACGGAGCTCTCGACGGCTTTGGCCACCACCACCTACGAGATTCGG
GATAAATTGTCTGAGGTGATGCCGGGCCTCTTTCTATCCAATGGCCAGGT
TGCTCAAGACTTGCCCATGCTCCGGGCGCAACGCATATCCCACGTCCTTA
ATATGGCGCCAGTTGAAGTGCCCACCACTGCCGAGTTCTACGCGGAGGAC
AAAATGGACTTTAAGGCCATTGTGGCCAAGGACGAGTTTGACTACGACGT
CATGCAGCATTGGCCCGAGGCCCGTGCCTACATCGATGCCGCTCTCAACG
AACAAAACGGCCGAGTCCTCGTCCACTGCCAAGCAGGAATCAACCGCTCG
GGGGCCATCGCTGTGGCCTATATGATGGTGACACGACGACGGCAACTCGT
GGATGCCGCGAAGTCCGCCAAGCGAAAACGATACCTGCTGATTACCAACC
TGAATTTCCAGCTCTCCTTGGTCAAGTTTGCCTCGGCCGAAGGTCTTTTG
GGTAAGCCGGCTTTACCTCGCCGAGTGTCTTCCCCGAACCCGTACCCGGG
CTCTCCCATTGCCACAGATGAATTTAAATCAACCCGCTGGCCGTTTGGGT
GTAAGGGTAAGCCAGCCGTCTTGTTTTTGCATGGGACCTTCGCGCCTGTC
CATCACGGGCATATGGCAGCGTTGAAGTCCTCCCTCGCCTACATCCGCAC
GCAGTTGCCTGAGCTTCACTTGGCGGGGGCATTCTTCAGTCCATGTCACC
AGGTGGAGGCAATGTCGCACTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_10:311344..312217-

>mRNA_4330 ID=mRNA_4330|Name=jgi.p|Nanoce1779_2|623207|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at scaffold_10:311344..312217- (Nannochloropsis oceanica)
GTGGAGGCAATGTCGCACTTGAATGAACCTCGACAACCCGCTTGGCAGCG
GCAGTGGCAAAAGTACGCCTCGCGGGCCCGGGTATTATGATCCCTCTACT
CTAAGCGAGGATGAGCGACGCATCGCCACGGAGCTCTCGACGGCTTTGGC
CACCACCACCTACGAGATTCGGGATAAATTGTCTGAGGTGATGCCGGGCC
TCTTTCTATCCAATGGCCAGGTTGCTCAAGACTTGCCCATGCTCCGGGCG
CAACGCATATCCCACGTCCTTAATATGGCGCCAGTTGAAGTGCCCACCAC
TGCCGAGTTCTACGCGGAGGACAAAATGGACTTTAAGGCCATTGTGGCCA
AGGACGAGTTTGACTACGACGTCATGCAGCATTGGCCCGAGGCCCGTGCC
TACATCGATGCCGCTCTCAACGAACAAAACGGCCGAGTCCTCGTCCACTG
CCAAGCAGGAATCAACCGCTCGGGGGCCATCGCTGTGGCCTATATGATGG
TGACACGACGACGGCAACTCGTGGATGCCGCGAAGTCCGCCAAGCGAAAA
CGATACCTGCTGATTACCAACCTGAATTTCCAGCTCTCCTTGGTCAAGTT
TGCCTCGGCCGAAGGTCTTTTGGGTAAGCCGGCTTTACCTCGCCGAGTGT
CTTCCCCGAACCCGTACCCGGGCTCTCCCATTGCCACAGATGAATTTAAA
TCAACCCGCTGGCCGTTTGGGTGTAAGGGTAAGCCAGCCGTCTTGTTTTT
GCATGGGACCTTCGCGCCTGTCCATCACGGGCATATGGCAGCGTTGAAGT
GGAGGCAATGTCGCACTTGAATGAACCTCGACAACCCGCTTGGCAGCGGC
AGTGGCAAAAGTACGCCTCGCGGGCCCGGGTATTATGATCCCTCTACTCT
AAGCGAGGATGAGCGACGCATCGCCACGGAGCTCTCGACGGCTTTGGCCA
CCACCACCTACGAGATTCGGGATAAATTGTCTGAGGTGATGCCGGGCCTC
TTTCTATCCAATGGCCAGGTTGCTCAAGACTTGCCCATGCTCCGGGCGCA
ACGCATATCCCACGTCCTTAATATGGCGCCAGTTGAAGTGCCCACCACTG
CCGAGTTCTACGCGGAGGACAAAATGGACTTTAAGGCCATTGTGGCCAAG
GACGAGTTTGACTACGACGTCATGCAGCATTGGCCCGAGGCCCGTGCCTA
CATCGATGCCGCTCTCAACGAACAAAACGGCCGAGTCCTCGTCCACTGCC
AAGCAGGAATCAACCGCTCGGGGGCCATCGCTGTGGCCTATATGATGGTG
ACACGACGACGGCAACTCGTGGATGCCGCGAAGTCCGCCAAGCGAAAACG
ATACCTGCTGATTACCAACCTGAATTTCCAGCTCTCCTTGGTCAAGTTTG
CCTCGGCCGAAGGTCTTTTGGGTAAGCCGGCTTTACCTCGCCGAGTGTCT
TCCCCGAACCCGTACCCGGGCTCTCCCATTGCCACAGATGAATTTAAATC
AACCCGCTGGCCGTTTGGGTGTAAGGGTAAGCCAGCCGTCTTGTTTTTGC
ATGGGACCTTCGCGCCTGTCCATCACGGGCATATGGCAGCGTTGAA
back to top
Synonyms
Publications