jgi.p|Nanoce1779_2|577316, mRNA_433 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577316
Unique NamemRNA_433
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1078
Alignment locationscaffold_3:1069163..1070540 +

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Properties
Property NameValue
TranscriptId577402
TrackFilteredModels2
ProteinId577316
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1069163..1070540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577316gene_433Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577316mRNA_433-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_433CDS_433Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_433 ID=mRNA_433|Name=jgi.p|Nanoce1779_2|577316|organism=Nannochloropsis oceanica|type=mRNA|length=1078bp
CCTATCCCCTCACCACTCCCTCCTCCCCCCTTCTGGAAGAACTCAGGCGG
CAACGCCCCTCCTCCTGCTCCTCCTCCTCCACCACCACCCCGTCGTGCTT
CCCCTTGGCCTTGCTCCCAGGATACCTCCAACCGTTTCCGTTCCCTGTAC
CGTTTCGCCGCTTCTCGCCAGGCCTTTTGCTTCTCCTCCTTATGCCGGGC
ACAGAACACATGCATTCCCCCCCCTCGGTCCTTAGTCGTCCTGGGTTCAT
TACACAGAGAATCGTGCTGACAGATATGCTCGCGCCCCACCAGGTTTTTC
TTACTCCCGCCTCCGCTCTTTTTCGCCGGTGCTCCTGCGGAAGGGTGGCC
GGAGGGAAGAGGGGGAGGAGGAGCACTAGTAATGGAGGGGCTACCCGGAA
ACGCCACAGGAGGGGCATCAAATGTCCCATTCACGGGCATATGCCGATGC
GCGTCAGCATCGGCAGGAGCAGCGGTAGCGGCAGCAGAAGCAGCAGCGGC
GGCAGCGGCGGCACTATTCTTGGCTTTGCTTTTGCCCGCTTTCTTGGGAG
GGCCGACGGTAGGGAGGGAGTATTCCATGGAAGGGGAAGAAGAAGAGATG
CCCAAGTCTCCGACGACTTCTGTCGAGGCGCTGACGGCGGTGTTGTCGGC
GCTGGAGGGCGTGGACTTGTTGGTGGAGCTCGACTTGCGCGGAGGAGCTT
TCCCTGTCGATGTGCGCTTGTGCTCTACACTTCCGCCGGCCGGTCCTTCT
TGCGGTGGCGAGGTGGTAGTGGCGGCCTGCGAATTCACGTGGCTTTTCTG
ATGATGAAGTCCTTTCTTTGCTTTGTCTTGTCCTTGCCCACCTTTGGTGG
TAGATGACGGGTTGCTGGCTATTGGGATATCCTCCTCTGACATTCCAGGT
TGCCTTGAGAAGTCTACGCTGGTGATTTAGCGTGTGTTATGCGTGTGGTG
GTTCGAGTAATCAGCTTCCGATCGTCATAGCATCATCATCATCGTCAAGT
CGCCCTGAAGTTGGCTGCTTCCGCTATGTTATGATGCCCCCCTCTCGTTC
GCGCAATGCGTCGCAAGGCACATTTTCA
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protein sequence of jgi.p|Nanoce1779_2|577316

>mRNA_433-protein ID=mRNA_433-protein|Name=jgi.p|Nanoce1779_2|577316|organism=Nannochloropsis oceanica|type=polypeptide|length=222bp
MPGTEHMHSPPSVLSRPGFITQRIVLTDMLAPHQVFLTPASALFRRCSCG
RVAGGKRGRRSTSNGGATRKRHRRGIKCPIHGHMPMRVSIGRSSGSGSRS
SSGGSGGTILGFAFARFLGRADGREGVFHGRGRRRDAQVSDDFCRGADGG
VVGAGGRGLVGGARLARRSFPCRCALVLYTSAGRSFLRWRGGSGGLRIHV
AFLMMKSFLCFVLSLPTFGGR*
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mRNA from alignment at scaffold_3:1069163..1070540+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_433 ID=mRNA_433|Name=jgi.p|Nanoce1779_2|577316|organism=Nannochloropsis oceanica|type=mRNA|length=1378bp|location=Sequence derived from alignment at scaffold_3:1069163..1070540+ (Nannochloropsis oceanica)
CCTATCCCCTCACCACTCCCTCCTCCCCCCTTCTGGAAGAACTCAGGCGG
CAACGCCCCTCCTCCTGCTCCTCCTCCTCCACCACCACCCCGTCGTGCTT
CCCCTTGGCCTTGCTCCCAGGATACCTCCAACCGTTTCCGTTCCCTGTAC
CGTTTCGCCGCTTCTCGCCAGGCCTTTTGCTTCTCCTCCTTATGCCGGGC
ACAGAACACATGCATTCCCCCCCCTCGGTCCTTAGTCGTCCTGGGTTCAT
TACACAGAGAATCGTGCTGACAGATATGCTCGCGCCCCACCAGGTTTTTC
TTACTCCCGCCTCCGCTCTTTTTCGCCGGTGCTCCTGCGGAAGGGTGGCC
GGAGGGAAGAGGGGGAGGAGGAGCACTAGTAATGGAGGGGCTACCCGGAA
ACGCCACAGGAGGGGCATCAAATGTCCCATTCACGGGCATATGCCGATGC
GCGTCAGCATCGGCAGGAGCAGCGGTAGCGGCAGCAGAAGCAGCAGCGGC
GGCAGCGGCGGCACTATTCTTGGCTTTGCTTTTGCCCGCTTTCTTGGGAG
GGCCGACGGTAGGGAGGGAGTATTCCATGGAAGGGGAAGAAGAAGAGATG
CCCAAGTCTCCGACGACTTCTGTCGAGGCGCTGACGGCGGTGTTGTCGGC
GCTGGAGGGCGTGGACCTGGCGGAAGGGAAAGGAATGATGGGGGTAGAGA
CATAGGTTTAGAGATATGAATAAATGTCTTGATTCGTCATCTGGTATGAG
GGAACAAGGGCATATGAAGTTATGGCTCGCACGGACTATTCGTCCATCCA
CACTCCTTTATGGAAACACTCATATCGTACAACCACCATGAGAGGACGCA
AGTCATCCCACGCGCCATCATGCATGCATACGAAAGGGGGCGTGACAAAA
GGCGGCGTCATCGGAGGCATCTTCTTCCTTTCTTTCCTTCTTTCTCTCGA
TCCCACTCGTACTCACTTGTTGGTGGAGCTCGACTTGCGCGGAGGAGCTT
TCCCTGTCGATGTGCGCTTGTGCTCTACACTTCCGCCGGCCGGTCCTTCT
TGCGGTGGCGAGGTGGTAGTGGCGGCCTGCGAATTCACGTGGCTTTTCTG
ATGATGAAGTCCTTTCTTTGCTTTGTCTTGTCCTTGCCCACCTTTGGTGG
TAGATGACGGGTTGCTGGCTATTGGGATATCCTCCTCTGACATTCCAGGT
TGCCTTGAGAAGTCTACGCTGGTGATTTAGCGTGTGTTATGCGTGTGGTG
GTTCGAGTAATCAGCTTCCGATCGTCATAGCATCATCATCATCGTCAAGT
CGCCCTGAAGTTGGCTGCTTCCGCTATGTTATGATGCCCCCCTCTCGTTC
GCGCAATGCGTCGCAAGGCACATTTTCA
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Coding sequence (CDS) from alignment at scaffold_3:1069163..1070540+

>mRNA_433 ID=mRNA_433|Name=jgi.p|Nanoce1779_2|577316|organism=Nannochloropsis oceanica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_3:1069163..1070540+ (Nannochloropsis oceanica)
ATGCCGGGCACAGAACACATGCATTCCCCCCCCTCGGTCCTTAGTCGTCC
TGGGTTCATTACACAGAGAATCGTGCTGACAGATATGCTCGCGCCCCACC
AGGTTTTTCTTACTCCCGCCTCCGCTCTTTTTCGCCGGTGCTCCTGCGGA
AGGGTGGCCGGAGGGAAGAGGGGGAGGAGGAGCACTAGTAATGGAGGGGC
TACCCGGAAACGCCACAGGAGGGGCATCAAATGTCCCATTCACGGGCATA
TGCCGATGCGCGTCAGCATCGGCAGGAGCAGCGGTAGCGGCAGCAGAAGC
AGCAGCGGCGGCAGCGGCGGCACTATTCTTGGCTTTGCTTTTGCCCGCTT
TCTTGGGAGGGCCGACGGTAGGGAGGGAGTATTCCATGGAAGGGGAAGAA
GAAGAGATGCCCAAGTCTCCGACGACTTCTGTCGAGGCGCTGACGGCGGT
GTTGTCGGCGCTGGAGGGCGTGGACTTGTTGGTGGAGCTCGACTTGCGCG
GAGGAGCTTTCCCTGTCGATGTGCGCTTGTGCTCTACACTTCCGCCGGCC
GGTCCTTCTTGCGGTGGCGAGGTGGTAGTGGCGGCCTGCGAATTCACGTG
GCTTTTCTGATGATGAAGTCCTTTCTTTGCTTTGTCTTGTCCTTGCCCAC
CTTTGGTGGTAGATGAATGCCGGGCACAGAACACATGCATTCCCCCCCCT
CGGTCCTTAGTCGTCCTGGGTTCATTACACAGAGAATCGTGCTGACAGAT
ATGCTCGCGCCCCACCAGGTTTTTCTTACTCCCGCCTCCGCTCTTTTTCG
CCGGTGCTCCTGCGGAAGGGTGGCCGGAGGGAAGAGGGGGAGGAGGAGCA
CTAGTAATGGAGGGGCTACCCGGAAACGCCACAGGAGGGGCATCAAATGT
CCCATTCACGGGCATATGCCGATGCGCGTCAGCATCGGCAGGAGCAGCGG
TAGCGGCAGCAGAAGCAGCAGCGGCGGCAGCGGCGGCACTATTCTTGGCT
TTGCTTTTGCCCGCTTTCTTGGGAGGGCCGACGGTAGGGAGGGAGTATTC
CATGGAAGGGGAAGAAGAAGAGATGCCCAAGTCTCCGACGACTTCTGTCG
AGGCGCTGACGGCGGTGTTGTCGGCGCTGGAGGGCGTGGACTTGTTGGTG
GAGCTCGACTTGCGCGGAGGAGCTTTCCCTGTCGATGTGCGCTTGTGCTC
TACACTTCCGCCGGCCGGTCCTTCTTGCGGTGGCGAGGTGGTAGTGGCGG
CCTGCGAATTCACGTGGCTTTTCTGATGATGAAGTCCTTTCTTTGCTTTG
TCTTGTCCTTGCCCACCTTTGGTGGTAGATGA
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Synonyms
Publications