jgi.p|Nanoce1779_2|588756, mRNA_4329 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588756
Unique NamemRNA_4329
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2603
Alignment locationscaffold_10:309719..312321 -

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Properties
Property NameValue
TranscriptId588842
TrackFilteredModels2
ProteinId588756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:309719..312321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588756gene_4329Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588756mRNA_4329-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4329CDS_4329Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4329 ID=mRNA_4329|Name=jgi.p|Nanoce1779_2|588756|organism=Nannochloropsis oceanica|type=mRNA|length=2603bp
ACAGGAGGCCCGAAAAGGAGCACATCATCATTTACCAAGGGCTAAAAATG
GATGTCTCCATCCCCTCTTCCAGCCGAACACACGTCAAGTAGCAAACCCC
AAAAATGAACCTCGACAACCCGCTTGGCAGCGGCAGTGGCAAAAGTACGC
CTCGCGGGCCCGGGTATTATGATCCCTCTACTCTAAGCGAGGATGAGCGA
CGCATCGCCACGGAGCTCTCGACGGCTTTGGCCACCACCACCTACGAGAT
TCGGGATAAATTGTCTGAGGTGATGCCGGGCCTCTTTCTATCCAATGGCC
AGGTTGCTCAAGACTTGCCCATGCTCCGGGCGCAACGCATATCCCACGTC
CTTAATATGGCGCCAGTTGAAGTGCCCACCACTGCCGAGTTCTACGCGGA
GGACAAAATGGACTTTAAGGCCATTGTGGCCAAGGACGAGTTTGACTACG
ACGTCATGCAGCATTGGCCCGAGGCCCGTGCCTACATCGATGCCGCTCTC
AACGAACAAAACGGCCGAGTCCTCGTCCACTGCCAAGCAGGAATCAACCG
CTCGGGGGCCATCGCTGTGGCCTATATGATGGTGACACGACGACGGCAAC
TCGTGGATGCCGCGAAGTCCGCCAAGCGAAAACGATACCTGCTGATTACC
AACCTGAATTTCCAGCTCTCCTTGGTCAAGTTTGCCTCGGCCGAAGGTCT
TTTGGGTAAGCCGGCTTTACCTCGCCGAGTGTCTTCCCCGAACCCGTACC
CGGGCTCTCCCATTGCCACAGATGAATTTAAATCAACCCGCTGGCCGTTT
GGGTGTAAGGGTAAGCCAGCCGTCTTGTTTTTGCATGGGACCTTCGCGCC
TGTCCATCACGGGCATATGGCAGCGTTGAAGTCCTCCCTCGCCTACATCC
GCACGCAGTTGCCTGAGCTTCACTTGGCGGGGGCATTCTTCAGTCCATGT
CACCAGGTGGAGGCAATGTCGCACTTGACGCCTGACGAGGCTGTCTCTCT
TGAAGATCGTTTGGCGATGCTGAAGCTTGCATGCCCCACTGCAACGACAG
TAGCCGAAATTCCCGTCGCTGTCGACACGTGGGAATGCTCTCAAATGGCC
CCTCCGCCCCTCTCTACCTCCGTCCGCTCCTTTGCTCGTCGAGCCACCGC
AGCAGCGATTCGACGGGGGTTGGATGCCTTGCCTGTTGTGGTGTGGGTGG
TAGGTACCTCGGGCTTGCACTGGGACGCAGCTGTAGATGGCATGGACGTT
GATCCCTCTCTCGTGGCCGTGTGTGTGGTGGTGGACAAAGGTCAGGAAGA
AGAGGAGAAGAAATTGAGCGAACGTTTGAAGGATGGTCCGTTACAGGGTC
GTGTGAGGTGGGTGCATGCCAGTGGGCCCGCGTACAGCTCGGAGAAAGTG
AGGGAGGGGACGCTGCCTGTAGGGGTGCCGGCGGTAGAGACCTACGTGAG
AGAACACTTGCTGTGGCATTATCCGTCAGCACATGAGCTTTTTTTGGCGA
AGCTGGTTCATCAGGGGCTGATGAGGGAGGGGATGGAGGAATGGGAGGAG
GACGAGGCGTCGTCGGGTTTGCCGGGACTGGAGGAAGAAGGGGAGAGCGA
GGTGGAGACGAAGGCAGAGATTGTAGGGAACTTGTGGGCGCAGCTGTTAA
GGCGACCGAATGTGTGGCGGTGTTACTACAAACCCCCTCCTCTCCCTCCT
TGCACTCCTGCTGAGTCCCCCCACGCCAGCAAAAACTGCAGCGCCCGCTT
CTTCCAAGAAATCGAGGAGGACCAAGAAAACGTCAGCCCATATTCCCAGC
AACAACGTCATGCAAAGATCCATCCATCCCTCCCCCCCCCTGTCCCTATT
CTTCACCCGCATCTATCAACTATGTCCGTTTCGGCCTTGTCCTCCTCCTC
TATTATCTCCCGCCTTGCTACCGAAAATCCATTCGCGATCCGCCGCCTCG
TCGTCAAGCTTTTCCCCTCCCACAACCTCGAAGCCCTGCGCATGGAAGAA
GAGGCGTATCGCCGCCTGGAATTTGTGCGCCTACAGAACGAAGGGGCTTT
GGCTTTACCCCCTCTTGTTGGGGTCGCCAAAGAATCGCACCGCTGCCAAG
CCGCGCTCATTTTGGAGGACGCTTTTGCCCAAGGCTGGGAAATGAATGAT
TTCTCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAAC
GGAAAGTTCTCCATTTCCACCGAGCAGAAATGAAAGCAGCTCCCGCAACT
CCCTCCATTCCGGCCTCACGGGTTCTGCAGGTGGAAAGTCCACTCCCCTC
TCTCCAATGAGGCATTCCTCCTCCTTTCCCTCCCTCCATACCCTATCTCC
TCAACCCCTGGATGCCTGCACGCCGGGCTCTAGTGCACGTGCTACTAAAG
AGGAAAAAATCTTGAAAGCTGTGAAGGCACTGGCGTGGTTGCACATCAAG
AACTGGGGCATAGTGAAAGAAGCGCAGGAAGACGGACCGTTAGATCCTCA
TTTCTTGACGTCCAACGTGGCGTTGAGCAGGAGCAAGAGCAGCAGCAACA
GCATCTCTAGTAATGGGAGCAGCGGTAGCTTGAACGGCCCGAGTGGTGGA
GGA
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protein sequence of jgi.p|Nanoce1779_2|588756

>mRNA_4329-protein ID=mRNA_4329-protein|Name=jgi.p|Nanoce1779_2|588756|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MCGGVTTNPLLSLLALLLSPPTPAKTAAPASSKKSRRTKKTSAHIPSNNV
MQRSIHPSPPLSLFFTRIYQLCPFRPCPPPLLSPALLPKIHSRSAASSSS
FSPPTTSKPCAWKKRRIAAWNLCAYRTKGLWLYPLLLGSPKNRTAAKPRS
FWRTLLPKAGK*
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mRNA from alignment at scaffold_10:309719..312321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4329 ID=mRNA_4329|Name=jgi.p|Nanoce1779_2|588756|organism=Nannochloropsis oceanica|type=mRNA|length=2603bp|location=Sequence derived from alignment at scaffold_10:309719..312321- (Nannochloropsis oceanica)
ACAGGAGGCCCGAAAAGGAGCACATCATCATTTACCAAGGGCTAAAAATG
GATGTCTCCATCCCCTCTTCCAGCCGAACACACGTCAAGTAGCAAACCCC
AAAAATGAACCTCGACAACCCGCTTGGCAGCGGCAGTGGCAAAAGTACGC
CTCGCGGGCCCGGGTATTATGATCCCTCTACTCTAAGCGAGGATGAGCGA
CGCATCGCCACGGAGCTCTCGACGGCTTTGGCCACCACCACCTACGAGAT
TCGGGATAAATTGTCTGAGGTGATGCCGGGCCTCTTTCTATCCAATGGCC
AGGTTGCTCAAGACTTGCCCATGCTCCGGGCGCAACGCATATCCCACGTC
CTTAATATGGCGCCAGTTGAAGTGCCCACCACTGCCGAGTTCTACGCGGA
GGACAAAATGGACTTTAAGGCCATTGTGGCCAAGGACGAGTTTGACTACG
ACGTCATGCAGCATTGGCCCGAGGCCCGTGCCTACATCGATGCCGCTCTC
AACGAACAAAACGGCCGAGTCCTCGTCCACTGCCAAGCAGGAATCAACCG
CTCGGGGGCCATCGCTGTGGCCTATATGATGGTGACACGACGACGGCAAC
TCGTGGATGCCGCGAAGTCCGCCAAGCGAAAACGATACCTGCTGATTACC
AACCTGAATTTCCAGCTCTCCTTGGTCAAGTTTGCCTCGGCCGAAGGTCT
TTTGGGTAAGCCGGCTTTACCTCGCCGAGTGTCTTCCCCGAACCCGTACC
CGGGCTCTCCCATTGCCACAGATGAATTTAAATCAACCCGCTGGCCGTTT
GGGTGTAAGGGTAAGCCAGCCGTCTTGTTTTTGCATGGGACCTTCGCGCC
TGTCCATCACGGGCATATGGCAGCGTTGAAGTCCTCCCTCGCCTACATCC
GCACGCAGTTGCCTGAGCTTCACTTGGCGGGGGCATTCTTCAGTCCATGT
CACCAGGTGGAGGCAATGTCGCACTTGACGCCTGACGAGGCTGTCTCTCT
TGAAGATCGTTTGGCGATGCTGAAGCTTGCATGCCCCACTGCAACGACAG
TAGCCGAAATTCCCGTCGCTGTCGACACGTGGGAATGCTCTCAAATGGCC
CCTCCGCCCCTCTCTACCTCCGTCCGCTCCTTTGCTCGTCGAGCCACCGC
AGCAGCGATTCGACGGGGGTTGGATGCCTTGCCTGTTGTGGTGTGGGTGG
TAGGTACCTCGGGCTTGCACTGGGACGCAGCTGTAGATGGCATGGACGTT
GATCCCTCTCTCGTGGCCGTGTGTGTGGTGGTGGACAAAGGTCAGGAAGA
AGAGGAGAAGAAATTGAGCGAACGTTTGAAGGATGGTCCGTTACAGGGTC
GTGTGAGGTGGGTGCATGCCAGTGGGCCCGCGTACAGCTCGGAGAAAGTG
AGGGAGGGGACGCTGCCTGTAGGGGTGCCGGCGGTAGAGACCTACGTGAG
AGAACACTTGCTGTGGCATTATCCGTCAGCACATGAGCTTTTTTTGGCGA
AGCTGGTTCATCAGGGGCTGATGAGGGAGGGGATGGAGGAATGGGAGGAG
GACGAGGCGTCGTCGGGTTTGCCGGGACTGGAGGAAGAAGGGGAGAGCGA
GGTGGAGACGAAGGCAGAGATTGTAGGGAACTTGTGGGCGCAGCTGTTAA
GGCGACCGAATGTGTGGCGGTGTTACTACAAACCCCCTCCTCTCCCTCCT
TGCACTCCTGCTGAGTCCCCCCACGCCAGCAAAAACTGCAGCGCCCGCTT
CTTCCAAGAAATCGAGGAGGACCAAGAAAACGTCAGCCCATATTCCCAGC
AACAACGTCATGCAAAGATCCATCCATCCCTCCCCCCCCCTGTCCCTATT
CTTCACCCGCATCTATCAACTATGTCCGTTTCGGCCTTGTCCTCCTCCTC
TATTATCTCCCGCCTTGCTACCGAAAATCCATTCGCGATCCGCCGCCTCG
TCGTCAAGCTTTTCCCCTCCCACAACCTCGAAGCCCTGCGCATGGAAGAA
GAGGCGTATCGCCGCCTGGAATTTGTGCGCCTACAGAACGAAGGGGCTTT
GGCTTTACCCCCTCTTGTTGGGGTCGCCAAAGAATCGCACCGCTGCCAAG
CCGCGCTCATTTTGGAGGACGCTTTTGCCCAAGGCTGGGAAATGAATGAT
TTCTCAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAAC
GGAAAGTTCTCCATTTCCACCGAGCAGAAATGAAAGCAGCTCCCGCAACT
CCCTCCATTCCGGCCTCACGGGTTCTGCAGGTGGAAAGTCCACTCCCCTC
TCTCCAATGAGGCATTCCTCCTCCTTTCCCTCCCTCCATACCCTATCTCC
TCAACCCCTGGATGCCTGCACGCCGGGCTCTAGTGCACGTGCTACTAAAG
AGGAAAAAATCTTGAAAGCTGTGAAGGCACTGGCGTGGTTGCACATCAAG
AACTGGGGCATAGTGAAAGAAGCGCAGGAAGACGGACCGTTAGATCCTCA
TTTCTTGACGTCCAACGTGGCGTTGAGCAGGAGCAAGAGCAGCAGCAACA
GCATCTCTAGTAATGGGAGCAGCGGTAGCTTGAACGGCCCGAGTGGTGGA
GGA
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Coding sequence (CDS) from alignment at scaffold_10:309719..312321-

>mRNA_4329 ID=mRNA_4329|Name=jgi.p|Nanoce1779_2|588756|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_10:309719..312321- (Nannochloropsis oceanica)
ATGTGTGGCGGTGTTACTACAAACCCCCTCCTCTCCCTCCTTGCACTCCT
GCTGAGTCCCCCCACGCCAGCAAAAACTGCAGCGCCCGCTTCTTCCAAGA
AATCGAGGAGGACCAAGAAAACGTCAGCCCATATTCCCAGCAACAACGTC
ATGCAAAGATCCATCCATCCCTCCCCCCCCCTGTCCCTATTCTTCACCCG
CATCTATCAACTATGTCCGTTTCGGCCTTGTCCTCCTCCTCTATTATCTC
CCGCCTTGCTACCGAAAATCCATTCGCGATCCGCCGCCTCGTCGTCAAGC
TTTTCCCCTCCCACAACCTCGAAGCCCTGCGCATGGAAGAAGAGGCGTAT
CGCCGCCTGGAATTTGTGCGCCTACAGAACGAAGGGGCTTTGGCTTTACC
CCCTCTTGTTGGGGTCGCCAAAGAATCGCACCGCTGCCAAGCCGCGCTCA
TTTTGGAGGACGCTTTTGCCCAAGGCTGGGAAATGA
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Synonyms
Publications