jgi.p|Nanoce1779_2|21464, mRNA_4324 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|21464
Unique Name	mRNA_4324
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2202
Alignment location	scaffold_10:298216..300417 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	21550
Track	FilteredModels2
ProteinId	21464

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:298216..300417 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|21464	gene_4324	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|21464	mRNA_4324-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4324	CDS_4324	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:298216..300417+
coding sequence from alignment at scaffold_10:298216..300417+

mRNA sequence

>mRNA_4324 ID=mRNA_4324|Name=jgi.p|Nanoce1779_2|21464|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp
ACAGCACACTACCCTCACCGCCAAATCATGCGTCGTAGCTCCCGCATCAA
CCACAAGGTGGACGACATCGCCAGACCTTCAGCCAGAGCCATCTCACCAT
TTGTTCTTACCAAGACTGCGCGTGGCCGGTCAGCGAAGCCCCTCCTTTCA
TCCTCCACTTCCTCCTCTGGTCCTCCCCCAGGCCCTAGTGCTGCTGCAGT
AGCTAAGGGCAAAGGTCCTCTCAAAGCACTTGCTGTCCCAGGTCGCAGCC
GTGTAACTGTTAGCAAAGCAAACGTACCAGCTCTTTCCAGCTTCAAGTTC
ACCCAGCCAGCAATGACTCTCTGCCCCCTTAAGACTTCCCACCCCATCAT
CCTACGGCAGCCCAAGTCCCAAAAATCAACAACAAGCATGATGCCTCCCC
GAAGATTCGCCGCGTACGCCTCCCCTATCATTCCTCCCCCCACCTTCCAA
TTTCGTCGTCCTCTACAAGCAGAGACTCAACCCTCCCTCCTCCTTCCTCC
TTTTCCTTTTCCTCCTCCACCTGCTTATCCCGCCTACACCACCGCCCTCT
CTCCTGAGCCCGTCACATCAGCAGCAGCAGGAGGAGAAGGAGGGTTATCC
TCTCTTTACCCGTCCTCCTCTTTCACTATGCGCCAGGGCCGCACACGTAA
GCCCTCTGAGAAAAAACTCGCGGCTCAAAAAGCCCAGGAAGAGGGGGAGG
ACGAGAAGGAGGACGAGGAGGAAGACGAGGCAGACAATGGTGATGGGAAG
AAAATTGTGTTAGGCATAGGAGAATGCGGTGACGTGGATTACTATCCCTC
TTTTCTGGAGATGCGCGGAGAGGAGGAGTTGGAGGGTGCTTCCGGTGTTT
CTCGAAAGAAGGGGAAAGAGGAGGATGAGGAGGAGGAGGACGAGAACGGC
CCGGCCGCTGACTTGCATATTTACGCCCGAGATCTCAACCGCCTCCTCCA
CACCTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCGTCTT
CTTTCTCCTCTTTTTCTACCTCTATCTCTTCTTCGATGCATTTCGCTTCT
TTCTCCCATCCCACCCACCTCCCTTTCCTCTTGCCCGGGCAGCCTTTGAG
AGATTGGAAGAAAAGCACTCTGAAGTCCTTGGCCGACGCCATCAATCTCC
ACCCCTCCGGGTGTCTGGTAAATCACGTGGTTGTCTCCTCCGTGGTGGGA
GGAAGGAGGGAGGAAAGGGGGAAGGAGGCCGTGGGGATGCTGGACCCGAG
TTCGTCGTTATATTTGTTGACGGTGAGAGAAAGGGGGGGAGAGAGAAAGA
GGGTTAAAAGTGGAAGAAGCGGAGAAGGAGGAGGAGGAGGAGGAGATGGA
GGGAGGTTGAATGTGGAGTTGATGATCGGTAAGGAGGGAGGGAAGAAAGA
GAAGAAGGAGGAGTGCAGCATTCTTCGTCTTTGCTTGCGACCTGGAAGCC
TCCTTCGGGTCGGGTTGCGCACGGCTGGGCGCTTGACACGTCGGACGTTC
CAACAAGTGGAGGCGGAGAGCAAGCATAAGCCGTTGCAGCAGCAGGAGGT
GGTGGTCTGTTGCTTTCGGGCAGTGACGCATTTCTTGGATACATGCACAG
GCAGCCCTGTGGCACCTTTTACTGCTGCTGCTTCTACCGTTACTGCTACC
GTTACTGCTACTGCTGCTGCTCTTGGTGTTGAGGCTAAAAGCGGTTCCAC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCACCACCTCGGAAGCGTAAGA
CCCCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCAGCATTGGCAGCACCG
ATGGAGAAAGGAGAGGGAATGGATGCAAAAAGCAGGGAGAGGAAGAACAC
TGTTGCTGCTGCAGTTGTTGCTACTGATACTGCTATTGCTGCTGCGGTTG
GCAAGACACAGAAGAAGAGAGGAGGAGAGATGGGGGAGTTGAAGAAAAAG
GAAAAGGTGGTGAAGACGCAAAAGAAGGAGGTGGATTCTTCGCAACGTAA
GCTTAAGGCTCTCGTGAGAGGCAAGGCAGCGGTGACGATGGCGATAGTGG
GGAGAAAAGGAGAAAGAGGAGGGAGGGGGAAAGGAGCGGGTGCACTGGAC
GAGGAGAGGGAGGAGAAGGTGGAGGAAACGGCGCGCAGGGAGGAGAAAGA
GGGAGAGCCGACGGGTCAGCAGCAGCAGCAGCAGCAGGTCCTTAAGGTGG
AG

protein sequence of jgi.p|Nanoce1779_2|21464

>mRNA_4324-protein ID=mRNA_4324-protein|Name=jgi.p|Nanoce1779_2|21464|organism=Nannochloropsis oceanica|type=polypeptide|length=725bp
MRRSSRINHKVDDIARPSARAISPFVLTKTARGRSAKPLLSSSTSSSGPP
PGPSAAAVAKGKGPLKALAVPGRSRVTVSKANVPALSSFKFTQPAMTLCP
LKTSHPIILRQPKSQKSTTSMMPPRRFAAYASPIIPPPTFQFRRPLQAET
QPSLLLPPFPFPPPPAYPAYTTALSPEPVTSAAAGGEGGLSSLYPSSSFT
MRQGRTRKPSEKKLAAQKAQEEGEDEKEDEEEDEADNGDGKKIVLGIGEC
GDVDYYPSFLEMRGEEELEGASGVSRKKGKEEDEEEEDENGPAADLHIYA
RDLNRLLHTSSSLSSSSSSSSSPSSFSSFSTSISSSMHFASFSHPTHLPF
LLPGQPLRDWKKSTLKSLADAINLHPSGCLVNHVVVSSVVGGRREERGKE
AVGMLDPSSSLYLLTVRERGGERKRVKSGRSGEGGGGGGDGGRLNVELMI
GKEGGKKEKKEECSILRLCLRPGSLLRVGLRTAGRLTRRTFQQVEAESKH
KPLQQQEVVVCCFRAVTHFLDTCTGSPVAPFTAAASTVTATVTATAAALG
VEAKSGSTAAAAAAAAAAPPRKRKTPAAAAAAAATAALAAPMEKGEGMDA
KSRERKNTVAAAVVATDTAIAAAVGKTQKKRGGEMGELKKKEKVVKTQKK
EVDSSQRKLKALVRGKAAVTMAIVGRKGERGGRGKGAGALDEEREEKVEE
TARREEKEGEPTGQQQQQQQVLKVE

mRNA from alignment at scaffold_10:298216..300417+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4324 ID=mRNA_4324|Name=jgi.p|Nanoce1779_2|21464|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at scaffold_10:298216..300417+ (Nannochloropsis oceanica)
ACAGCACACTACCCTCACCGCCAAATCATGCGTCGTAGCTCCCGCATCAA
CCACAAGGTGGACGACATCGCCAGACCTTCAGCCAGAGCCATCTCACCAT
TTGTTCTTACCAAGACTGCGCGTGGCCGGTCAGCGAAGCCCCTCCTTTCA
TCCTCCACTTCCTCCTCTGGTCCTCCCCCAGGCCCTAGTGCTGCTGCAGT
AGCTAAGGGCAAAGGTCCTCTCAAAGCACTTGCTGTCCCAGGTCGCAGCC
GTGTAACTGTTAGCAAAGCAAACGTACCAGCTCTTTCCAGCTTCAAGTTC
ACCCAGCCAGCAATGACTCTCTGCCCCCTTAAGACTTCCCACCCCATCAT
CCTACGGCAGCCCAAGTCCCAAAAATCAACAACAAGCATGATGCCTCCCC
GAAGATTCGCCGCGTACGCCTCCCCTATCATTCCTCCCCCCACCTTCCAA
TTTCGTCGTCCTCTACAAGCAGAGACTCAACCCTCCCTCCTCCTTCCTCC
TTTTCCTTTTCCTCCTCCACCTGCTTATCCCGCCTACACCACCGCCCTCT
CTCCTGAGCCCGTCACATCAGCAGCAGCAGGAGGAGAAGGAGGGTTATCC
TCTCTTTACCCGTCCTCCTCTTTCACTATGCGCCAGGGCCGCACACGTAA
GCCCTCTGAGAAAAAACTCGCGGCTCAAAAAGCCCAGGAAGAGGGGGAGG
ACGAGAAGGAGGACGAGGAGGAAGACGAGGCAGACAATGGTGATGGGAAG
AAAATTGTGTTAGGCATAGGAGAATGCGGTGACGTGGATTACTATCCCTC
TTTTCTGGAGATGCGCGGAGAGGAGGAGTTGGAGGGTGCTTCCGGTGTTT
CTCGAAAGAAGGGGAAAGAGGAGGATGAGGAGGAGGAGGACGAGAACGGC
CCGGCCGCTGACTTGCATATTTACGCCCGAGATCTCAACCGCCTCCTCCA
CACCTCCTCCTCCCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCGTCTT
CTTTCTCCTCTTTTTCTACCTCTATCTCTTCTTCGATGCATTTCGCTTCT
TTCTCCCATCCCACCCACCTCCCTTTCCTCTTGCCCGGGCAGCCTTTGAG
AGATTGGAAGAAAAGCACTCTGAAGTCCTTGGCCGACGCCATCAATCTCC
ACCCCTCCGGGTGTCTGGTAAATCACGTGGTTGTCTCCTCCGTGGTGGGA
GGAAGGAGGGAGGAAAGGGGGAAGGAGGCCGTGGGGATGCTGGACCCGAG
TTCGTCGTTATATTTGTTGACGGTGAGAGAAAGGGGGGGAGAGAGAAAGA
GGGTTAAAAGTGGAAGAAGCGGAGAAGGAGGAGGAGGAGGAGGAGATGGA
GGGAGGTTGAATGTGGAGTTGATGATCGGTAAGGAGGGAGGGAAGAAAGA
GAAGAAGGAGGAGTGCAGCATTCTTCGTCTTTGCTTGCGACCTGGAAGCC
TCCTTCGGGTCGGGTTGCGCACGGCTGGGCGCTTGACACGTCGGACGTTC
CAACAAGTGGAGGCGGAGAGCAAGCATAAGCCGTTGCAGCAGCAGGAGGT
GGTGGTCTGTTGCTTTCGGGCAGTGACGCATTTCTTGGATACATGCACAG
GCAGCCCTGTGGCACCTTTTACTGCTGCTGCTTCTACCGTTACTGCTACC
GTTACTGCTACTGCTGCTGCTCTTGGTGTTGAGGCTAAAAGCGGTTCCAC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCACCACCTCGGAAGCGTAAGA
CCCCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCAGCATTGGCAGCACCG
ATGGAGAAAGGAGAGGGAATGGATGCAAAAAGCAGGGAGAGGAAGAACAC
TGTTGCTGCTGCAGTTGTTGCTACTGATACTGCTATTGCTGCTGCGGTTG
GCAAGACACAGAAGAAGAGAGGAGGAGAGATGGGGGAGTTGAAGAAAAAG
GAAAAGGTGGTGAAGACGCAAAAGAAGGAGGTGGATTCTTCGCAACGTAA
GCTTAAGGCTCTCGTGAGAGGCAAGGCAGCGGTGACGATGGCGATAGTGG
GGAGAAAAGGAGAAAGAGGAGGGAGGGGGAAAGGAGCGGGTGCACTGGAC
GAGGAGAGGGAGGAGAAGGTGGAGGAAACGGCGCGCAGGGAGGAGAAAGA
GGGAGAGCCGACGGGTCAGCAGCAGCAGCAGCAGCAGGTCCTTAAGGTGG
AG

Coding sequence (CDS) from alignment at scaffold_10:298216..300417+

>mRNA_4324 ID=mRNA_4324|Name=jgi.p|Nanoce1779_2|21464|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at scaffold_10:298216..300417+ (Nannochloropsis oceanica)
ATGCGTCGTAGCTCCCGCATCAACCACAAGGTGGACGACATCGCCAGACC
TTCAGCCAGAGCCATCTCACCATTTGTTCTTACCAAGACTGCGCGTGGCC
GGTCAGCGAAGCCCCTCCTTTCATCCTCCACTTCCTCCTCTGGTCCTCCC
CCAGGCCCTAGTGCTGCTGCAGTAGCTAAGGGCAAAGGTCCTCTCAAAGC
ACTTGCTGTCCCAGGTCGCAGCCGTGTAACTGTTAGCAAAGCAAACGTAC
CAGCTCTTTCCAGCTTCAAGTTCACCCAGCCAGCAATGACTCTCTGCCCC
CTTAAGACTTCCCACCCCATCATCCTACGGCAGCCCAAGTCCCAAAAATC
AACAACAAGCATGATGCCTCCCCGAAGATTCGCCGCGTACGCCTCCCCTA
TCATTCCTCCCCCCACCTTCCAATTTCGTCGTCCTCTACAAGCAGAGACT
CAACCCTCCCTCCTCCTTCCTCCTTTTCCTTTTCCTCCTCCACCTGCTTA
TCCCGCCTACACCACCGCCCTCTCTCCTGAGCCCGTCACATCAGCAGCAG
CAGGAGGAGAAGGAGGGTTATCCTCTCTTTACCCGTCCTCCTCTTTCACT
ATGCGCCAGGGCCGCACACGTAAGCCCTCTGAGAAAAAACTCGCGGCTCA
AAAAGCCCAGGAAGAGGGGGAGGACGAGAAGGAGGACGAGGAGGAAGACG
AGGCAGACAATGGTGATGGGAAGAAAATTGTGTTAGGCATAGGAGAATGC
GGTGACGTGGATTACTATCCCTCTTTTCTGGAGATGCGCGGAGAGGAGGA
GTTGGAGGGTGCTTCCGGTGTTTCTCGAAAGAAGGGGAAAGAGGAGGATG
AGGAGGAGGAGGACGAGAACGGCCCGGCCGCTGACTTGCATATTTACGCC
CGAGATCTCAACCGCCTCCTCCACACCTCCTCCTCCCTCTCCTCCTCCTC
CTCCTCCTCCTCCTCCCCGTCTTCTTTCTCCTCTTTTTCTACCTCTATCT
CTTCTTCGATGCATTTCGCTTCTTTCTCCCATCCCACCCACCTCCCTTTC
CTCTTGCCCGGGCAGCCTTTGAGAGATTGGAAGAAAAGCACTCTGAAGTC
CTTGGCCGACGCCATCAATCTCCACCCCTCCGGGTGTCTGGTAAATCACG
TGGTTGTCTCCTCCGTGGTGGGAGGAAGGAGGGAGGAAAGGGGGAAGGAG
GCCGTGGGGATGCTGGACCCGAGTTCGTCGTTATATTTGTTGACGGTGAG
AGAAAGGGGGGGAGAGAGAAAGAGGGTTAAAAGTGGAAGAAGCGGAGAAG
GAGGAGGAGGAGGAGGAGATGGAGGGAGGTTGAATGTGGAGTTGATGATC
GGTAAGGAGGGAGGGAAGAAAGAGAAGAAGGAGGAGTGCAGCATTCTTCG
TCTTTGCTTGCGACCTGGAAGCCTCCTTCGGGTCGGGTTGCGCACGGCTG
GGCGCTTGACACGTCGGACGTTCCAACAAGTGGAGGCGGAGAGCAAGCAT
AAGCCGTTGCAGCAGCAGGAGGTGGTGGTCTGTTGCTTTCGGGCAGTGAC
GCATTTCTTGGATACATGCACAGGCAGCCCTGTGGCACCTTTTACTGCTG
CTGCTTCTACCGTTACTGCTACCGTTACTGCTACTGCTGCTGCTCTTGGT
GTTGAGGCTAAAAGCGGTTCCACTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCACCACCTCGGAAGCGTAAGACCCCAGCAGCAGCAGCAGCAGCAGCCG
CCACAGCAGCATTGGCAGCACCGATGGAGAAAGGAGAGGGAATGGATGCA
AAAAGCAGGGAGAGGAAGAACACTGTTGCTGCTGCAGTTGTTGCTACTGA
TACTGCTATTGCTGCTGCGGTTGGCAAGACACAGAAGAAGAGAGGAGGAG
AGATGGGGGAGTTGAAGAAAAAGGAAAAGGTGGTGAAGACGCAAAAGAAG
GAGGTGGATTCTTCGCAACGTAAGCTTAAGGCTCTCGTGAGAGGCAAGGC
AGCGGTGACGATGGCGATAGTGGGGAGAAAAGGAGAAAGAGGAGGGAGGG
GGAAAGGAGCGGGTGCACTGGACGAGGAGAGGGAGGAGAAGGTGGAGGAA
ACGGCGCGCAGGGAGGAGAAAGAGGGAGAGCCGACGGGTCAGCAGCAGCA
GCAGCAGCAGGTCCTTAAGGTGGAG

Synonyms

Publications