jgi.p|Nanoce1779_2|588731, mRNA_4321 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588731
Unique Name	mRNA_4321
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1917
Alignment location	scaffold_10:289246..291162 -

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Properties


Property Name	Value
TranscriptId	588817
Track	FilteredModels2
ProteinId	588731

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:289246..291162 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588731	gene_4321	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588731	mRNA_4321-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4321	CDS_4321	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:289246..291162-
coding sequence from alignment at scaffold_10:289246..291162-

mRNA sequence

>mRNA_4321 ID=mRNA_4321|Name=jgi.p|Nanoce1779_2|588731|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp
CCCCCCCCCCCCCCCCATCAATTATCACCAAGCCCCATCACACCATACGC
ACACGGATGCAAGTCATTCGAGAACGCCTGCCCTTGCACGCTTGACTTGT
CTCGTTCCTGGTCCTTATACGTTTCTCATTGTCGCCGAGTCCTCCAGTCT
TCCGTGCATCACCCACGACAAGAACACATCCAACACATCCAAGCACTCGG
ACATAACAGACGTCTTCTCAGCAATTCTTTGGGTCGAGTGCAGTATCACT
ATTCAATGACATGGACAAGTAGAACGCCACCATCAGAAAAGGAGGCCTGC
CTCCTGCCTTTTCTCACCGCCCACGCCTCTTGGTGCATGATGTCTGTCCA
ACCCCGTTCAACCCCTCATTTTCCCCCCCACTCTTCCTCATTTCAAACCA
AAATCACAGGCAAATTGCTTCCTCTTTGCTGTTCGTTTTCCCATCAAAGC
AATGAAGTTTTTCAGCACCGTCCTTCTCCTGTCTACCGCTGCGGTGCAGG
GGTTCATCCTGCCGGCGCCCCGAGCCTTCACCACTTCCCTCACTACCAGC
CGCTCGACCCCAAGCATGGCCTTGAGCACAGCCATGGGTGCGAACAGTGC
TTGGCGTTTCCTATCCGCGGTCCGCAAGTCTGCTGCTATCTCTGCTCCCG
CCAAATCGACGACTGCCTTGGCCTCGACGGCAGCCGGCGGGTTGGCGCCC
AAGAAGATGACCGGCTTCGAGATGTACGAGAAGGGAAGCGAGCTCATCGT
GAACCTTTTTCCTATTTGGACTGTCCTTGCCTCTGGGCTCGCGCTGTACC
GTCCTGATTTGTTCGCGTGGTTCACAACCAAATATTTCACGGCGGGCCTC
GGCTTGTTGATGCTCTCCATGGGGATAACTCTCTCCCCTCAAGATTTTGC
TGATGTCCTGAAGCGGCCCTCGGCGGTCCTCGTGGGTTTCATCTTCTGTT
ATGCCTTCATGCCTGCCTTCGCGTACGGCACCGCCCAGGCGTTCTCGTTG
TCCCCTGAGATGGTGGCGGGGCTTGTGCTGGTCGGGTCTATCAACGGCGG
ACAGGCTTCCAACCTGTGCACTTACATTGCCAAGGGCGACGTAGCCTTGT
CCGTGATGATGACGACCGCGACGACCCTTGGGGCTATTTTCATGACGCCT
CTCCTGTGCAAATTCTTGCTGGGGGCCATCGTGCCCGTGGATGCCGTAGG
GATCGCCTTGTCGACTATCCAGGTTGTCCTTGCCCCCATTGTCCTCGGCA
TGCTTGCGAACAAGTACATGAATCGCGTTGTCAAGGCCGTGTTGCCCTTC
TCGCCCGTTGTGGGCATGGTCTCCACGTGTTTGCTCGTGGCGTCGGCGGT
TGCACAATGTGCCCCTGCTATTCTTGGAGCTGGATGGAGCTTGCAATTGG
CCACGATTTTCTATCACTTGGTGGCGGGTATCTTGGGGTATGGAGTACCC
AAGGCGATGGGATTCTCGGAAACCGACTCGCGTACCATGGCCATTGAGAC
GGCGATGAAGTCGTCGGCGTTTGGTTTCTTGTTAGCGAGTTTGCATTTCC
CTAACTTTTTGGTACGTGTCCCCCCTGCGGTGTCGGTCGTGTGGATGGCT
GTGACTGGGTCGACGCTTGCAGTGATTTGGCGTTTTATCCCCGTGAAGGA
TGGGAAGAAGTAAATGTCAATTGTGGGAGTGTGTGAGCGGAGGAAAGTAT
GGAAGGAGGAGGAAGATGGTCGGAGATCAGGCTGAAAAATTGATGTTGGA
AACCGGTTACTTGATTTGTGATTGTGGGTGAATATGTCGTGTGTCTGTTT
GTTTGTGTCTTGAGTGTGTATTTCGTGGTGTCGTGTCTTGGTACTGGTAA
GTATCCCTGGGGAAGGCTTGAGGTGACACGCCCATGATAAAAAACGAAAA
AGGACCATGTCTTGCTG

protein sequence of jgi.p|Nanoce1779_2|588731

>mRNA_4321-protein ID=mRNA_4321-protein|Name=jgi.p|Nanoce1779_2|588731|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MKFFSTVLLLSTAAVQGFILPAPRAFTTSLTTSRSTPSMALSTAMGANSA
WRFLSAVRKSAAISAPAKSTTALASTAAGGLAPKKMTGFEMYEKGSELIV
NLFPIWTVLASGLALYRPDLFAWFTTKYFTAGLGLLMLSMGITLSPQDFA
DVLKRPSAVLVGFIFCYAFMPAFAYGTAQAFSLSPEMVAGLVLVGSINGG
QASNLCTYIAKGDVALSVMMTTATTLGAIFMTPLLCKFLLGAIVPVDAVG
IALSTIQVVLAPIVLGMLANKYMNRVVKAVLPFSPVVGMVSTCLLVASAV
AQCAPAILGAGWSLQLATIFYHLVAGILGYGVPKAMGFSETDSRTMAIET
AMKSSAFGFLLASLHFPNFLVRVPPAVSVVWMAVTGSTLAVIWRFIPVKD
GKK*

mRNA from alignment at scaffold_10:289246..291162-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4321 ID=mRNA_4321|Name=jgi.p|Nanoce1779_2|588731|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at scaffold_10:289246..291162- (Nannochloropsis oceanica)
CCCCCCCCCCCCCCCCATCAATTATCACCAAGCCCCATCACACCATACGC
ACACGGATGCAAGTCATTCGAGAACGCCTGCCCTTGCACGCTTGACTTGT
CTCGTTCCTGGTCCTTATACGTTTCTCATTGTCGCCGAGTCCTCCAGTCT
TCCGTGCATCACCCACGACAAGAACACATCCAACACATCCAAGCACTCGG
ACATAACAGACGTCTTCTCAGCAATTCTTTGGGTCGAGTGCAGTATCACT
ATTCAATGACATGGACAAGTAGAACGCCACCATCAGAAAAGGAGGCCTGC
CTCCTGCCTTTTCTCACCGCCCACGCCTCTTGGTGCATGATGTCTGTCCA
ACCCCGTTCAACCCCTCATTTTCCCCCCCACTCTTCCTCATTTCAAACCA
AAATCACAGGCAAATTGCTTCCTCTTTGCTGTTCGTTTTCCCATCAAAGC
AATGAAGTTTTTCAGCACCGTCCTTCTCCTGTCTACCGCTGCGGTGCAGG
GGTTCATCCTGCCGGCGCCCCGAGCCTTCACCACTTCCCTCACTACCAGC
CGCTCGACCCCAAGCATGGCCTTGAGCACAGCCATGGGTGCGAACAGTGC
TTGGCGTTTCCTATCCGCGGTCCGCAAGTCTGCTGCTATCTCTGCTCCCG
CCAAATCGACGACTGCCTTGGCCTCGACGGCAGCCGGCGGGTTGGCGCCC
AAGAAGATGACCGGCTTCGAGATGTACGAGAAGGGAAGCGAGCTCATCGT
GAACCTTTTTCCTATTTGGACTGTCCTTGCCTCTGGGCTCGCGCTGTACC
GTCCTGATTTGTTCGCGTGGTTCACAACCAAATATTTCACGGCGGGCCTC
GGCTTGTTGATGCTCTCCATGGGGATAACTCTCTCCCCTCAAGATTTTGC
TGATGTCCTGAAGCGGCCCTCGGCGGTCCTCGTGGGTTTCATCTTCTGTT
ATGCCTTCATGCCTGCCTTCGCGTACGGCACCGCCCAGGCGTTCTCGTTG
TCCCCTGAGATGGTGGCGGGGCTTGTGCTGGTCGGGTCTATCAACGGCGG
ACAGGCTTCCAACCTGTGCACTTACATTGCCAAGGGCGACGTAGCCTTGT
CCGTGATGATGACGACCGCGACGACCCTTGGGGCTATTTTCATGACGCCT
CTCCTGTGCAAATTCTTGCTGGGGGCCATCGTGCCCGTGGATGCCGTAGG
GATCGCCTTGTCGACTATCCAGGTTGTCCTTGCCCCCATTGTCCTCGGCA
TGCTTGCGAACAAGTACATGAATCGCGTTGTCAAGGCCGTGTTGCCCTTC
TCGCCCGTTGTGGGCATGGTCTCCACGTGTTTGCTCGTGGCGTCGGCGGT
TGCACAATGTGCCCCTGCTATTCTTGGAGCTGGATGGAGCTTGCAATTGG
CCACGATTTTCTATCACTTGGTGGCGGGTATCTTGGGGTATGGAGTACCC
AAGGCGATGGGATTCTCGGAAACCGACTCGCGTACCATGGCCATTGAGAC
GGCGATGAAGTCGTCGGCGTTTGGTTTCTTGTTAGCGAGTTTGCATTTCC
CTAACTTTTTGGTACGTGTCCCCCCTGCGGTGTCGGTCGTGTGGATGGCT
GTGACTGGGTCGACGCTTGCAGTGATTTGGCGTTTTATCCCCGTGAAGGA
TGGGAAGAAGTAAATGTCAATTGTGGGAGTGTGTGAGCGGAGGAAAGTAT
GGAAGGAGGAGGAAGATGGTCGGAGATCAGGCTGAAAAATTGATGTTGGA
AACCGGTTACTTGATTTGTGATTGTGGGTGAATATGTCGTGTGTCTGTTT
GTTTGTGTCTTGAGTGTGTATTTCGTGGTGTCGTGTCTTGGTACTGGTAA
GTATCCCTGGGGAAGGCTTGAGGTGACACGCCCATGATAAAAAACGAAAA
AGGACCATGTCTTGCTG

Coding sequence (CDS) from alignment at scaffold_10:289246..291162-

>mRNA_4321 ID=mRNA_4321|Name=jgi.p|Nanoce1779_2|588731|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_10:289246..291162- (Nannochloropsis oceanica)
ATGAAGTTTTTCAGCACCGTCCTTCTCCTGTCTACCGCTGCGGTGCAGGG
GTTCATCCTGCCGGCGCCCCGAGCCTTCACCACTTCCCTCACTACCAGCC
GCTCGACCCCAAGCATGGCCTTGAGCACAGCCATGGGTGCGAACAGTGCT
TGGCGTTTCCTATCCGCGGTCCGCAAGTCTGCTGCTATCTCTGCTCCCGC
CAAATCGACGACTGCCTTGGCCTCGACGGCAGCCGGCGGGTTGGCGCCCA
AGAAGATGACCGGCTTCGAGATGTACGAGAAGGGAAGCGAGCTCATCGTG
AACCTTTTTCCTATTTGGACTGTCCTTGCCTCTGGGCTCGCGCTGTACCG
TCCTGATTTGTTCGCGTGGTTCACAACCAAATATTTCACGGCGGGCCTCG
GCTTGTTGATGCTCTCCATGGGGATAACTCTCTCCCCTCAAGATTTTGCT
GATGTCCTGAAGCGGCCCTCGGCGGTCCTCGTGGGTTTCATCTTCTGTTA
TGCCTTCATGCCTGCCTTCGCGTACGGCACCGCCCAGGCGTTCTCGTTGT
CCCCTGAGATGGTGGCGGGGCTTGTGCTGGTCGGGTCTATCAACGGCGGA
CAGGCTTCCAACCTGTGCACTTACATTGCCAAGGGCGACGTAGCCTTGTC
CGTGATGATGACGACCGCGACGACCCTTGGGGCTATTTTCATGACGCCTC
TCCTGTGCAAATTCTTGCTGGGGGCCATCGTGCCCGTGGATGCCGTAGGG
ATCGCCTTGTCGACTATCCAGGTTGTCCTTGCCCCCATTGTCCTCGGCAT
GCTTGCGAACAAGTACATGAATCGCGTTGTCAAGGCCGTGTTGCCCTTCT
CGCCCGTTGTGGGCATGGTCTCCACGTGTTTGCTCGTGGCGTCGGCGGTT
GCACAATGTGCCCCTGCTATTCTTGGAGCTGGATGGAGCTTGCAATTGGC
CACGATTTTCTATCACTTGGTGGCGGGTATCTTGGGGTATGGAGTACCCA
AGGCGATGGGATTCTCGGAAACCGACTCGCGTACCATGGCCATTGAGACG
GCGATGAAGTCGTCGGCGTTTGGTTTCTTGTTAGCGAGTTTGCATTTCCC
TAACTTTTTGGTACGTGTCCCCCCTGCGGTGTCGGTCGTGTGGATGGCTG
TGACTGGGTCGACGCTTGCAGTGATTTGGCGTTTTATCCCCGTGAAGGAT
GGGAAGAAGTAA

Synonyms

Publications