jgi.p|Nanoce1779_2|588728, mRNA_4320 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588728
Unique Name	mRNA_4320
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1285
Alignment location	scaffold_10:287592..289331 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588814
Track	FilteredModels2
ProteinId	588728

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:287592..289331 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588728	gene_4320	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588728	mRNA_4320-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4320	CDS_4320	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:287592..289331-
coding sequence from alignment at scaffold_10:287592..289331-

mRNA sequence

>mRNA_4320 ID=mRNA_4320|Name=jgi.p|Nanoce1779_2|588728|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp
CGTGTCTTGGTACTGGTAAGTATCCCTGGGGAAGGCTTGAGGTGACACGC
CCATGATAAAAAACGAAAAAGGACCATGTCTTGCTGCATGAATCTTCGAA
GTTCTGCGACACCATGTCGTGACCTGCTATTCTTGCTTTCACTGTTGTTG
TGTAGTTTGGCGTCATTTCCCGAGACACGAGTGTTGGGGAGGTTGAAAGG
CTTGCTTGCCCCTCCCCAAGATTGGGGCCAATCAACAATGATCTTTCTTT
CCAACCATCCCTCGTCTCCCTCGCTAAGCATGCCGATGAGTACACATGCG
CCAATAAAAGAAAATGATAAAGCAATACGATAGTTCCATATAAAAATAAA
CTCCATGCTCTCTGAAAGAATGTCATAACTGATTTCAACTCAACTCAAGT
CGTCTCGTTTGCGTATGCCTTGCCCTGTGTTTTCTACCATATCTAAGACT
AACACACACAAATCCCCGGGGTCAGGACTAAGTCAAGCCTTGACAAGATG
GCCCCGCTCGCAGCCACCCTTGGGGCCGTCAGAGGGAGAGCCTCGAGTTA
TATCGTCATCCGAACATCGTTACTACAAGTGCAACCTGTCCAAATCACCC
TTCCAACACGCGGTCAGGGCCCTCAGCGCCACCGATCAGGGGTGCAGCGA
CGTGACTTCAGCAGCGGTACTGTTGCTGACCCTGAAGCGCGCCCCCCCTT
CCCTCCTTTCACGTTTGAGACCGCTAAGGAAAAGGTTCGAAAGGCACAAG
ACGCGTGGAATACTCGGAACCCGGACATGGTGGCCATGGCATACACCCCT
GACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAGGGTCGTGAGGCTAT
TAAGACGTTCTTGAGCAATAAGTGGGCCAAGGAGATAGACTACTGTTTGA
TGAAGGAGCTGTGGGGTTTCCATGGGAACCGGATCAGTGCCCGTTTTGAG
TACGAGTGGCACGACGGTCAGGGGCAGTGGTGGCGATCGCACGGGAATGA
GCAGTGGGAATTTAACGCGAAGGGCTTGATGCAGCGGCGCGACGCCAGCA
TCAACGACGTTCGAATCAAGGCGAGCGACCGCCGGTATATTAGGAATCCC
AAGACTGGCCTGGTTGAGTTTCCTCAGGGCCATCCTGCGGACAAGTAAAT
TAACCGCACAATAGACTGGAGAAGCTAGGAGGGTTGGGGGCAGTAGAGTG
GGAAAAGATAATGAGGGAGTAGCTTGGATATCGAAACGACACACGGAATG
ACCAGAAAGAAATGATAAGCGGAGTTGAGAAAAAA

protein sequence of jgi.p|Nanoce1779_2|588728

>mRNA_4320-protein ID=mRNA_4320-protein|Name=jgi.p|Nanoce1779_2|588728|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MAPLAATLGAVRGRASSYIVIRTSLLQVQPVQITLPTRGQGPQRHRSGVQ
RRDFSSGTVADPEARPPFPPFTFETAKEKVRKAQDAWNTRNPDMVAMAYT
PDSRWRNRETFLQGREAIKTFLSNKWAKEIDYCLMKELWGFHGNRISARF
EYEWHDGQGQWWRSHGNEQWEFNAKGLMQRRDASINDVRIKASDRRYIRN
PKTGLVEFPQGHPADK*

mRNA from alignment at scaffold_10:287592..289331-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4320 ID=mRNA_4320|Name=jgi.p|Nanoce1779_2|588728|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp|location=Sequence derived from alignment at scaffold_10:287592..289331- (Nannochloropsis oceanica)
CGTGTCTTGGTACTGGTAAGTATCCCTGGGGAAGGCTTGAGGTGACACGC
CCATGATAAAAAACGAAAAAGGACCATGTCTTGCTGCATGAATCTTCGAA
GTTCTGCGACACCATGTCGTGACCTGCTATTCTTGCTTTCACTGTTGTTG
TGTAGTTTGGCGTCATTTCCCGAGACACGAGTGTTGGGGAGGTTGAAAGG
CTTGCTTGCCCCTCCCCAAGATTGGGGCCAATCAACAATGATCTTTCTTT
CCAACCATCCCTCGTCTCCCTCGCTAAGCATGCCGATGAGTACACATGCG
CCAATAAAAGAAAATGATAAAGCAATACGATAGTTCCATATAAAAATAAA
CTCCATGCTCTCTGAAAGAATGTCATAACTGATTTCAACTCAACTCAAGT
CGTCTCGTTTGCGTATGCCTTGCCCTGTGTTTTCTACCATATCTAAGACT
AACACACACAAATCCCCGGGGTCAGGACTAAGTCAAGCCTTGACAAGATG
GCCCCGCTCGCAGCCACCCTTGGGGCCGTCAGAGGGAGAGCCTCGAGTTA
TATCGTCATCCGAACATCGTTACTACAAGTGCAACCTGTCCAAATCACCC
TTCCAACACGCGGTCAGGGCCCTCAGCGCCACCGATCAGGGGTGCAGCGA
CGTGACTTCAGCAGCGGTACTGTTGCTGACCCTGAAGCGCGCCCCCCCTT
CCCTCCTTTCACGTTTGAGACCGCTAAGGAAAAGGTAAACGCGTGCGAGT
TCACTTGAGCGGACATGGAATCCTTACAATTGTAGCTCAGTTTATCGACA
CCATCCCCTATCTCTTTAGGTTCGAAAGGCACAAGACGCGTGGAATACTC
GGAACCCGGACATGGTGGCCATGGCATGTACGTACCTCTCTAATAATACG
AAGTCTGAAAACAGCGAAGAGGCCGTCACCTTTGACCTTCTTTCCTACTC
TTCCCCCGTCTATCCTTAACAGACACCCCTGACAGCCGCTGGCGCAATCG
CGAAACATTTCTCCAGGGTCGTGAGGTGAGACTTTGAAGCGATCTCGGGA
TTGCATGAAGTGGGGTCATATCCTACCCCTGCCACCCCTCATTCATTCTG
CTCCGTGAAACGCACCATGCAGGCTATTAAGACGTTCTTGAGCAATAAGT
GGGCCAAGGAGATAGACTACTGTTTGATGAAGGAGCTGTGGGGTTTCCAT
GGGAACCGGATCAGTGCCCGTTTTGAGTACGAGTGGCACGACGGTCAGGG
GCAGTGGTGGCGATCGCACGGGAATGAGCAGTGGGAATTTAACGCGAAGG
GTACGTGCGTCAGTGAAGAAGGTGCGGAGGATTGCATGGAGGAGGATAAC
ATACACTGATGCACATTTATTTGTCTTACATCTCGTTTATCCTCGCAAGA
AATATATATACGTAAGGCGGCAGGAGAGTCCTTAACCCATACCAAGGCTT
CTCGTTACCCATTCTTTCCTTACTCCAGGCTTGATGCAGCGGCGCGACGC
CAGCATCAACGACGTTCGAATCAAGGCGAGCGACCGCCGGTATATTAGGA
ATCCCAAGACTGGCCTGGTTGAGTTTCCTCAGGGCCATCCTGCGGACAAG
TAAATTAACCGCACAATAGACTGGAGAAGCTAGGAGGGTTGGGGGCAGTA
GAGTGGGAAAAGATAATGAGGGAGTAGCTTGGATATCGAAACGACACACG
GAATGACCAGAAAGAAATGATAAGCGGAGTTGAGAAAAAA

Coding sequence (CDS) from alignment at scaffold_10:287592..289331-

>mRNA_4320 ID=mRNA_4320|Name=jgi.p|Nanoce1779_2|588728|organism=Nannochloropsis oceanica|type=CDS|length=3255bp|location=Sequence derived from alignment at scaffold_10:287592..289331- (Nannochloropsis oceanica)
GCTTGATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAAGGCG
AGCGACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGTTTCC
TCAGGGCCATCCTGCGGACAAGTAAGCTATTAAGACGTTCTTGAGCAATA
AGTGGGCCAAGGAGATAGACTACTGTTTGATGAAGGAGCTGTGGGGTTTC
CATGGGAACCGGATCAGTGCCCGTTTTGAGTACGAGTGGCACGACGGTCA
GGGGCAGTGGTGGCGATCGCACGGGAATGAGCAGTGGGAATTTAACGCGA
AGGACACCCCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAGGGT
CGTGAGGTTCGAAAGGCACAAGACGCGTGGAATACTCGGAACCCGGACAT
GGTGGCCATGGCATATGGCCCCGCTCGCAGCCACCCTTGGGGCCGTCAGA
GGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACAAGTGCA
ACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGCGCCACC
GATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCTGACCCT
GAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAAGGAAAA
GGCTTGATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAAGGC
GAGCGACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGTTTC
CTCAGGGCCATCCTGCGGACAAGTAAGCTATTAAGACGTTCTTGAGCAAT
AAGTGGGCCAAGGAGATAGACTACTGTTTGATGAAGGAGCTGTGGGGTTT
CCATGGGAACCGGATCAGTGCCCGTTTTGAGTACGAGTGGCACGACGGTC
AGGGGCAGTGGTGGCGATCGCACGGGAATGAGCAGTGGGAATTTAACGCG
AAGGACACCCCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAGGG
TCGTGAGGTTCGAAAGGCACAAGACGCGTGGAATACTCGGAACCCGGACA
TGGTGGCCATGGCATATGGCCCCGCTCGCAGCCACCCTTGGGGCCGTCAG
AGGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACAAGTGC
AACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGCGCCAC
CGATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCTGACCC
TGAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAAGGAAA
AGGCTTGATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAAGG
CGAGCGACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGTTT
CCTCAGGGCCATCCTGCGGACAAGTAAGCTATTAAGACGTTCTTGAGCAA
TAAGTGGGCCAAGGAGATAGACTACTGTTTGATGAAGGAGCTGTGGGGTT
TCCATGGGAACCGGATCAGTGCCCGTTTTGAGTACGAGTGGCACGACGGT
CAGGGGCAGTGGTGGCGATCGCACGGGAATGAGCAGTGGGAATTTAACGC
GAAGGACACCCCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAGG
GTCGTGAGGTTCGAAAGGCACAAGACGCGTGGAATACTCGGAACCCGGAC
ATGGTGGCCATGGCATATGGCCCCGCTCGCAGCCACCCTTGGGGCCGTCA
GAGGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACAAGTG
CAACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGCGCCA
CCGATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCTGACC
CTGAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAAGGAA
AAGGCTTGATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAAG
GCGAGCGACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGTT
TCCTCAGGGCCATCCTGCGGACAAGTAAGCTATTAAGACGTTCTTGAGCA
ATAAGTGGGCCAAGGAGATAGACTACTGTTTGATGAAGGAGCTGTGGGGT
TTCCATGGGAACCGGATCAGTGCCCGTTTTGAGTACGAGTGGCACGACGG
TCAGGGGCAGTGGTGGCGATCGCACGGGAATGAGCAGTGGGAATTTAACG
CGAAGGACACCCCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCAG
GGTCGTGAGGTTCGAAAGGCACAAGACGCGTGGAATACTCGGAACCCGGA
CATGGTGGCCATGGCATATGGCCCCGCTCGCAGCCACCCTTGGGGCCGTC
AGAGGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACAAGT
GCAACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGCGCC
ACCGATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCTGAC
CCTGAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAAGGA
AAAGGCTTGATGCAGCGGCGCGACGCCAGCATCAACGACGTTCGAATCAA
GGCGAGCGACCGCCGGTATATTAGGAATCCCAAGACTGGCCTGGTTGAGT
TTCCTCAGGGCCATCCTGCGGACAAGTAAGCTATTAAGACGTTCTTGAGC
AATAAGTGGGCCAAGGAGATAGACTACTGTTTGATGAAGGAGCTGTGGGG
TTTCCATGGGAACCGGATCAGTGCCCGTTTTGAGTACGAGTGGCACGACG
GTCAGGGGCAGTGGTGGCGATCGCACGGGAATGAGCAGTGGGAATTTAAC
GCGAAGGACACCCCTGACAGCCGCTGGCGCAATCGCGAAACATTTCTCCA
GGGTCGTGAGGTTCGAAAGGCACAAGACGCGTGGAATACTCGGAACCCGG
ACATGGTGGCCATGGCATATGGCCCCGCTCGCAGCCACCCTTGGGGCCGT
CAGAGGGAGAGCCTCGAGTTATATCGTCATCCGAACATCGTTACTACAAG
TGCAACCTGTCCAAATCACCCTTCCAACACGCGGTCAGGGCCCTCAGCGC
CACCGATCAGGGGTGCAGCGACGTGACTTCAGCAGCGGTACTGTTGCTGA
CCCTGAAGCGCGCCCCCCCTTCCCTCCTTTCACGTTTGAGACCGCTAAGG
AAAAG

Synonyms

Publications