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Properties
| Property Name | Value |
|---|
| TranscriptId | 577395 |
| Track | FilteredModels2 |
| ProteinId | 577309 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1066427..1069112 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_432 ID=mRNA_432|Name=jgi.p|Nanoce1779_2|577309|organism=Nannochloropsis oceanica|type=mRNA|length=2674bp
CTGCTATTGCTCAACCGCTGCGGGAGCAGTTGCAATTGCAGCAGCAGCAG
GAAACAGAGCAGCAGCAGCATCATCATCATCATCAAGCGCAGCAGCATCC
CCCGTTCGCTTTCCCCCCCCCTCCGATGGCTCTGCCGCCCCCAGTGGTTG
CCGGTGGTCCGCCTCCTCCTCAGCCTCTCATCGCCAGCAGCCCCGAAGAA
CTTAGCAATGACACTCCTTCTTCTGCTGCTGCTGCTCCTGCAGGCGGTGA
AGGCGCTGCAGCTCTCACCTCTGGCATTAAGCCTATGCTTCCTCATTCAC
ACTCAGGTGACTCGATCAACGACTCGACCGGCGGTGGCGCTCCGCCCCCC
CCCCTTCCCTCCCTTCCTACCCTTGACCGTCCTTCCTCCCCGCGTGGCGA
TCGGACGTCTCATTCCACCTCGTCCTCCTCGTCCTCCTCCTCTGCCACCT
CAATCACCACTGGTACCACCCCCTCCTCCCTCCCTTCCTCCCTCCCTCCT
TACTCTCCCCCAGCGGGCATTTCCCGCGCCATCGCTGCCTGGCCTTTGTT
CTGGTGTCAGAAGGAGATGATGCGATTCGTCCCGATGGAAACCCGTCAGT
TAATCAAGAAGGATTTCGACAATTTTTCGCAGGGGCGACCTGGCTTTCGC
GCCTATGCCGTCCAGCACCGGTTGAGCTATGAGCTGAACGCGGCGCCGAG
GAGGTACCGGGGAAAGGCGGGACAAGGGGGTCTGCTGGGAGTAAAGCTTT
GGGAGCTGGAGAAGTTTGAGTGGTTTGACAGTCTGTTGAAGTTCTTGGCC
AACGAGTGGTGGGATGTGGGGGTGATCATGTGGTGTGAGGAGGTGGGGAG
GGAGGAGGGGGGGAGGGAACGGTCGAGGCTGGAGGCGTACTTAAGGGAGG
CTGGAGCGACGATAGAGAGACGAAAAGCAGTGCTGCTCAGCCTGATGGGT
AGTGTGCACTTGAGGAGCTACGACTGGCAGGAAGGGGTTGAGGAGGGTGA
GGAGGAGGGAGGGCAAGGAGGGAGGGAAGGAGGGAAGGGAGGGGGAGGGC
CACGATTTGGGCAGATGTGCATGGTGATCAATATCCATGGACAGGGAGAG
GTGGTATTTAGGAAGAGAAAGGGAGGCGGAAAGAAGGAGGAGGTCTTGCG
GATGCCGTTGAAGAGTGGTGATGTGTATTGCTATACGGGGGAGTACAGGT
ACGGGTGTGAAGAGCGGGTGGAGCTAGATCAGGAATTGAGTCCTTACCGA
TGCTTCATTGCCATTCGATTTTGGTTGCCGGGACGGGAGTGGCTTGCGCG
GGTCGTGAGGGACGAGGGGGAGGGAGGGGGATTTCAAGGGTGGAGGAAGC
TGGACAAGGCGGACAAGGAGAGGGAGGGGAGGTGGGGAATGGAGCCGGGG
ATGGTGATGGTCAGTCCCACCTATGCAGGTATGGCGCGGGTTATGGGGGA
GGCGGATTCCGGGGCGGCGTGCGGTGTGGCTGGAGGGGGAGGGAACGGAG
TTGGAGGGGGAAAGAAGGGAGGGAAGAAGGCGGTGGGAGAAGGGAAGGAG
GGAGGAGGGGGAGAGGAGGGGGAATGTGGAGGCGGGGAGGGAGGAGGAGA
AAGAGTGAAAGAGGTGGCGGCAGGCGCAGCGGTTTCATCAACGACAGTGT
CCGCGGCGTCATCGGTGGCGAGCAAGGAAGAGGGAGGGGAGGGGGAAGGC
AAAAAAGAGGTAGAGGAGGAGGAGGAGCGGAAAGAGGCAGAAGAGGCTCA
GGGGGCGGGGATGAATGTGGAGGCTCAGGCTGATACGAAGAAGGATGAGG
AGGACAAAGTGAAGAAGGAAGAGCACGAGGGGGAGGGAGAAGAGAAGGAG
GCACAAGAAGGAATTAAAGAGGAGGCACAGATGGTCAAGGAGGAGGAGGG
GAAGGAAGGAGAGGATGACTTGATGCAGGTGTAGACTGAAGACAGAAAAG
ATAAAAAGAGATCAAGGGAAATGATAGACAGTACAGGAAGTATACGATGG
AAGCGCATGGTTCGATGACAGTATTGTTGGGAAGAAGAAAGCAAACGAAT
GAGAAGGGAAGTACATGGTCATGCGTGAGTTAGTGAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGCCTGTGATAAAGTAATACGAGAGAA
GGAAATAGGAAGGGGCACCGGCGATACGTATGTACGAGTACGGTAGTATT
TCTACTTCTGTTATCGAATGGAGTTGAAGGGAAGAAGAGGGGGAGATAGA
GTGGAAGGGGTGCGTGAAAGAGTCCTATAAAAAGCGAGACATGTGATGTG
ATCGTTATCATGTGATCAGTAGGGAGGGGAAAAAGGGAGAGAGAGAGTTG
TGAATCAGCAGAAAAAAGAGAAGAAGAAGAAGAGGAGGAGGAAAAACGAG
ACACAGAAGGATGAAGTAAACGAAGGAAGACGACTTGCAGAGAAAGGATG
AAGAAGACTTGAGAAAGTTGGATGACAGATACCTATCTAAAGACCAAAAA
AACGGTCGCCAAGGCGCCTGTCAGTGAGAAGGCCGAAGGGCGTCAATAAT
CAGAATGGGTGTTCATGGGAGAAAAAATGGCAGATGGGATGCGTCCGAGG
AACGAAAGTGAGTATGAGTCGGCGAAATGAAGATGAAAGACAAAAGAAGA
GATGACAAGTAGAAGGCACATTCA back to topprotein sequence of jgi.p|Nanoce1779_2|577309 >mRNA_432-protein ID=mRNA_432-protein|Name=jgi.p|Nanoce1779_2|577309|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp
MALPPPVVAGGPPPPQPLIASSPEELSNDTPSSAAAAPAGGEGAAALTSG
IKPMLPHSHSGDSINDSTGGGAPPPPLPSLPTLDRPSSPRGDRTSHSTSS
SSSSSSATSITTGTTPSSLPSSLPPYSPPAGISRAIAAWPLFWCQKEMMR
FVPMETRQLIKKDFDNFSQGRPGFRAYAVQHRLSYELNAAPRRYRGKAGQ
GGLLGVKLWELEKFEWFDSLLKFLANEWWDVGVIMWCEEVGREEGGRERS
RLEAYLREAGATIERRKAVLLSLMGSVHLRSYDWQEGVEEGEEEGGQGGR
EGGKGGGGPRFGQMCMVINIHGQGEVVFRKRKGGGKKEEVLRMPLKSGDV
YCYTGEYRYGCEERVELDQELSPYRCFIAIRFWLPGREWLARVVRDEGEG
GGFQGWRKLDKADKEREGRWGMEPGMVMVSPTYAGMARVMGEADSGAACG
VAGGGGNGVGGGKKGGKKAVGEGKEGGGGEEGECGGGEGGGERVKEVAAG
AAVSSTTVSAASSVASKEEGGEGEGKKEVEEEEERKEAEEAQGAGMNVEA
QADTKKDEEDKVKKEEHEGEGEEKEAQEGIKEEAQMVKEEEGKEGEDDLM
QV* back to topmRNA from alignment at scaffold_3:1066427..1069112- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_432 ID=mRNA_432|Name=jgi.p|Nanoce1779_2|577309|organism=Nannochloropsis oceanica|type=mRNA|length=2686bp|location=Sequence derived from alignment at scaffold_3:1066427..1069112- (Nannochloropsis oceanica)
CTGCTATTGCTCAACCGCTGCGGGAGCAGTTGCAATTGCAGCAGCAGCAG
GAAACAGAGCAGCAGCAGCATCATCATCATCATCAAGCGCAGCAGCATCC
CCCGTTCGCTTTCCCCCCCCCTCCGATGGCTCTGCCGCCCCCAGTGGTTG
CCGGTGGTCCGCCTCCTCCTCAGCCTCTCATCGCCAGCAGCCCCGAAGAA
CTTAGCAATGACACTCCTTCTTCTGCTGCTGCTGCTCCTGCAGGCGGTGA
AGGCGCTGCAGCTCTCACCTCTGGCATTAAGCCTATGCTTCCTCATTCAC
ACTCAGGTGACTCGATCAACGACTCGACCGGCGGTGGCGCTCCGCCCCCC
CCCCTTCCCTCCCTTCCTACCCTTGACCGTCCTTCCTCCCCGCGTGGCGA
TCGGACGTCTCATTCCACCTCGTCCTCCTCGTCCTCCTCCTCTGCCACCT
CAATCACCACTGGTACCACCCCCTCCTCCCTCCCTTCCTCCCTCCCTCCT
TACTCTCCCCCAGCGGGCATTTCCCGCGCCATCGCTGCCTGGCCTTTGTT
CTGGTGTCAGAAGGAGATGATGCGATTCGTCCCGATGGAAACCCGTCAGT
TAATCAAGAAGGATTTCGACAATTTTTCGCAGGGGCGACCTGGCTTTCGC
GCCTATGCCGTCCAGCACCGGTTGAGCTATGAGCTGAACGCGGCGCCGAG
GAGGTACCGGGGAAAGGCGGGACAAGGGGGTCTGCTGGGAGTAAAGCTTT
GGGAGCTGGAGAAGTTTGAGTGGTTTGACAGTCTGTTGAAGTTCTTGGCC
AACGAGTGGTGGGATGTGGGGGTGATCATGTGGTGTGAGGAGGTGGGGAG
GGAGGAGGGGGGGAGGGAACGGTCGAGGCTGGAGGCGTACTTAAGGGAGG
CTGGAGCGACGATAGAGAGACGAAAAGCAGTGCTGCTCAGCCTGATGGGT
AGTGTGCACTTGAGGAGCTACGACTGGCAGGAAGGGGTTGAGGAGGGTGA
GGAGGAGGGAGGGCAAGGAGGGAGGGAAGGAGGGAAGGGAGGGGGAGGGC
CACGATTTGGGCAGATGTGCATGGTGATCAATATCCATGGACAGGGAGAG
GTGGTATTTAGGAAGAGAAAGGGAGGCGGAAAGAAGGAGGAGGTCTTGCG
GATGCCGTTGAAGAGTGGTGATGTGTATTGCTATACGGGGGAGTACAGGT
ACGGGTGTGAAGAGCGGGTGGAGCTAGATCAGGAATTGAGTCCTTACCGA
TGCTTCATTGCCATTCGATTTTGGTTGCCGGGACGGGAGTGGCTTGCGCG
GGTCGTGAGGGACGAGGGGGAGGGAGGGGGATTTCAAGGGTGGAGGAAGC
TGGACAAGGCGGACAAGGAGAGGGAGGGGAGGTGGGGAATGGAGCCGGGG
ATGGTGATGGTCAGTCCCACCTATGCAGGTATGGCGCGGGTTATGGGGGA
GGCGGATTCCGGGGCGGCGTGCGGTGTGGCTGGAGGGGGAGGGAACGGAG
TTGGAGGGGGAAAGAAGGGAGGGAAGAAGGCGGTGGGAGAAGGGAAGGAG
GGAGGAGGGGGAGAGGAGGGGGAATGTGGAGGCGGGGAGGGAGGAGGAGA
AAGAGTGAAAGAGGTGGCGGCAGGCGCAGCGGTTTCATCAACGACAGTGT
CCGCGGCGTCATCGGTGGCGAGCAAGGAAGAGGGAGGGGAGGGGGAAGGC
AAAAAAGAGGTAGAGGAGGAGGAGGAGCGGAAAGAGGCAGAAGAGGCTCA
GGGGGCGGGGATGAATGTGGAGGCTCAGGCTGATACGAAGAAGGATGAGG
AGGACAAAGTGAAGAAGGAAGAGCACGAGGGGGAGGGAGAAGAGAAGGAG
GCACAAGAAGGAATTAAAGAGGAGGCACAGATGGTCAAGGAGGAGGAGGG
GAAGGAAGGAGAGGATGACTTGATGCAGGTGTAGACTGAAGACAGAAAAG
ATAAAAAGAGATCAAGGGAAATGATAGACAGTACAGGAAGTATACGATGG
AAGCGCATGGTTCGATGACAGTATTGTTGGGAAGAAGAAAGCAAACGAAT
GAGAAGGGAAGTACATGGTCATGCGTGAGTTAGTGAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGTGATAAAGT
AATACGAGAGAAGGAAATAGGAAGGGGCACCGGCGATACGTATGTACGAG
TACGGTAGTATTTCTACTTCTGTTATCGAATGGAGTTGAAGGGAAGAAGA
GGGGGAGATAGAGTGGAAGGGGTGCGTGAAAGAGTCCTATAAAAAGCGAG
ACATGTGATGTGATCGTTATCATGTGATCAGTAGGGAGGGGAAAAAGGGA
GAGAGAGAGTTGTGAATCAGCAGAAAAAAGAGAAGAAGAAGAAGAGGAGG
AGGAAAAACGAGACACAGAAGGATGAAGTAAACGAAGGAAGACGACTTGC
AGAGAAAGGATGAAGAAGACTTGAGAAAGTTGGATGACAGATACCTATCT
AAAGACCAAAAAAACGGTCGCCAAGGCGCCTGTCAGTGAGAAGGCCGAAG
GGCGTCAATAATCAGAATGGGTGTTCATGGGAGAAAAAATGGCAGATGGG
ATGCGTCCGAGGAACGAAAGTGAGTATGAGTCGGCGAAATGAAGATGAAA
GACAAAAGAAGAGATGACAAGTAGAAGGCACATTCA back to topCoding sequence (CDS) from alignment at scaffold_3:1066427..1069112- >mRNA_432 ID=mRNA_432|Name=jgi.p|Nanoce1779_2|577309|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_3:1066427..1069112- (Nannochloropsis oceanica)
ATGGCTCTGCCGCCCCCAGTGGTTGCCGGTGGTCCGCCTCCTCCTCAGCC
TCTCATCGCCAGCAGCCCCGAAGAACTTAGCAATGACACTCCTTCTTCTG
CTGCTGCTGCTCCTGCAGGCGGTGAAGGCGCTGCAGCTCTCACCTCTGGC
ATTAAGCCTATGCTTCCTCATTCACACTCAGGTGACTCGATCAACGACTC
GACCGGCGGTGGCGCTCCGCCCCCCCCCCTTCCCTCCCTTCCTACCCTTG
ACCGTCCTTCCTCCCCGCGTGGCGATCGGACGTCTCATTCCACCTCGTCC
TCCTCGTCCTCCTCCTCTGCCACCTCAATCACCACTGGTACCACCCCCTC
CTCCCTCCCTTCCTCCCTCCCTCCTTACTCTCCCCCAGCGGGCATTTCCC
GCGCCATCGCTGCCTGGCCTTTGTTCTGGTGTCAGAAGGAGATGATGCGA
TTCGTCCCGATGGAAACCCGTCAGTTAATCAAGAAGGATTTCGACAATTT
TTCGCAGGGGCGACCTGGCTTTCGCGCCTATGCCGTCCAGCACCGGTTGA
GCTATGAGCTGAACGCGGCGCCGAGGAGGTACCGGGGAAAGGCGGGACAA
GGGGGTCTGCTGGGAGTAAAGCTTTGGGAGCTGGAGAAGTTTGAGTGGTT
TGACAGTCTGTTGAAGTTCTTGGCCAACGAGTGGTGGGATGTGGGGGTGA
TCATGTGGTGTGAGGAGGTGGGGAGGGAGGAGGGGGGGAGGGAACGGTCG
AGGCTGGAGGCGTACTTAAGGGAGGCTGGAGCGACGATAGAGAGACGAAA
AGCAGTGCTGCTCAGCCTGATGGGTAGTGTGCACTTGAGGAGCTACGACT
GGCAGGAAGGGGTTGAGGAGGGTGAGGAGGAGGGAGGGCAAGGAGGGAGG
GAAGGAGGGAAGGGAGGGGGAGGGCCACGATTTGGGCAGATGTGCATGGT
GATCAATATCCATGGACAGGGAGAGGTGGTATTTAGGAAGAGAAAGGGAG
GCGGAAAGAAGGAGGAGGTCTTGCGGATGCCGTTGAAGAGTGGTGATGTG
TATTGCTATACGGGGGAGTACAGGTACGGGTGTGAAGAGCGGGTGGAGCT
AGATCAGGAATTGAGTCCTTACCGATGCTTCATTGCCATTCGATTTTGGT
TGCCGGGACGGGAGTGGCTTGCGCGGGTCGTGAGGGACGAGGGGGAGGGA
GGGGGATTTCAAGGGTGGAGGAAGCTGGACAAGGCGGACAAGGAGAGGGA
GGGGAGGTGGGGAATGGAGCCGGGGATGGTGATGGTCAGTCCCACCTATG
CAGGTATGGCGCGGGTTATGGGGGAGGCGGATTCCGGGGCGGCGTGCGGT
GTGGCTGGAGGGGGAGGGAACGGAGTTGGAGGGGGAAAGAAGGGAGGGAA
GAAGGCGGTGGGAGAAGGGAAGGAGGGAGGAGGGGGAGAGGAGGGGGAAT
GTGGAGGCGGGGAGGGAGGAGGAGAAAGAGTGAAAGAGGTGGCGGCAGGC
GCAGCGGTTTCATCAACGACAGTGTCCGCGGCGTCATCGGTGGCGAGCAA
GGAAGAGGGAGGGGAGGGGGAAGGCAAAAAAGAGGTAGAGGAGGAGGAGG
AGCGGAAAGAGGCAGAAGAGGCTCAGGGGGCGGGGATGAATGTGGAGGCT
CAGGCTGATACGAAGAAGGATGAGGAGGACAAAGTGAAGAAGGAAGAGCA
CGAGGGGGAGGGAGAAGAGAAGGAGGCACAAGAAGGAATTAAAGAGGAGG
CACAGATGGTCAAGGAGGAGGAGGGGAAGGAAGGAGAGGATGACTTGATG
CAGGTGTAG back to top
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