jgi.p|Nanoce1779_2|21291, mRNA_4318 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|21291
Unique NamemRNA_4318
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1717
Alignment locationscaffold_10:282138..284008 -

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Properties
Property NameValue
TranscriptId21377
TrackFilteredModels2
ProteinId21291
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:282138..284008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|21291gene_4318Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|21291mRNA_4318-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4318CDS_4318Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4318 ID=mRNA_4318|Name=jgi.p|Nanoce1779_2|21291|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp
CCTGCTCCACGCCATCCCTACACACACGCATGTCACAGGTGCTTCAGGCT
CTATCGTGGACACGGCTTTGGAAGACTGGGGTAGAAGGCGTTCAAAGCTT
GTTGACACATCGAGAAATGCTCTTGGCGGCGCGCGTCCATCTCCTGCTGT
GTGTGCGGGGCACCGGTGTCCTGTGCATGAATGCATAGAGCCACATCTTC
ACATCGAGGTACCCGCTGTAACACTAACTGGGAGAATCGTCACTGTGGAG
GGGAGGCACAGCCCCTGGACTGGAGCACGGGATTTGCCACCTCCTTTTCC
TCTCACAATCCTTCAGCCGCTTTTTTGGACCAGCACTACGACGACTGCGA
GGACTGCCAAGACAGCGATCGTTTCAGCAGCAGCAGCACAAGCAGCAGTG
ACTCCTCATTAAACGACATTCCGCCGTCGTCTCAGATCGCAGCATTGGTG
GAAAACGTTTTAGGCATCATGACAAGTGTGCAGACCATCCGGAAGCACCC
CGTACTCTCTACAGTCCTTTGGTTGCTCGGGGGAACAGTAGACGAAAAAT
CCGCCGGATGCAAGACCTGCTCTTCCCCCTCCTCCCCCTCCACCACCACA
TCCTCCTCCTCTAACCCCCGCATCTCACGCAACAACAATCAGTTGGACAA
CTATGAGGCACACTACCAGCGGAAGAACAGCTGCAGCAGCAACAGCAGCA
GCGATGGCCGGAATCATGACATAAGGCGGTTGCGCTGGAAAACGGCAGCC
GATGGTGGTGCCCCGTTAGCAGAACCGCCAGATGCGAATGCGAATGATCG
AGTTGTTTATTTTGAGGAGGACAGTCGTCGAAGCTGTAGCAGCGGAAATG
ATGGTAGTGGGGGGGATGAGAGGCCTTCCTCGGCAGTATCCGGGTCAGGG
TCAACTTTTGGTATGGCCTCAGGGGGTGACTCGTTTCAGGGGGGGTTGTT
GGGAGGGGAGGAAGGAGGGTCGATAGCCGTGGAGAGGATTATGCATGTGG
ATAGGGTAGAGCAGGATGATTTGGAGGAGATGAAGGGAGGGGGGAGGAGG
ACGAGGCGAAGAGGTAGTGGTGCGAATAGTGATTCAGCGAGTGCGGCTGC
CGCTGGGGCTATGAGCAGTCAGCACCATCGGTATTTGGATCATGTTAATA
ATGCTGGTGTAGGATACTTGCCGCATCACTTGCATGAGCAGCAGGGAGGA
GGAGGAGGTGGGAGGGAAGGAGGGGGTGACTCAGACGTCTCGCCGCAATG
GGGATGGTATGTTACTCTGACGCCGCCCAAGCCCGAGTTCTTTAACACCA
GCAGCAGTATTAAGAGCAACAACAACAATAACAAAAACGGGAACAACTAC
CAATATCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGGGGGTGAA
ACATCACCACCATCGCCATCGTCACTACTCCCGCGCCTCGGATGCACTGC
GGCCAAGCATGACCTAATGTGATTGTCTTGAAGGGTGGAGTGAGGACCGA
ACTTGACCTGATGTAAAGGGGGGAAGAAAGAAGGGGAAGGGGGGGTCTCA
TCATCATTTTTTGCGCCCCAATATGACGTGAATTTTTGGGTCTTTTTCAC
TGAGGGATGTTAGTAGAAGGAGAGAGGGATATGGAGAGATAAGGGGGCTT
TGAGTGGCAAAAGTAGTTTGTGAATGAGTCCGTGCATGTGATTGCTGATG
ATTTTTTTCAGGGGAGA
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protein sequence of jgi.p|Nanoce1779_2|21291

>mRNA_4318-protein ID=mRNA_4318-protein|Name=jgi.p|Nanoce1779_2|21291|organism=Nannochloropsis oceanica|type=polypeptide|length=429bp
MHRATSSHRGTRCNTNWENRHCGGEAQPLDWSTGFATSFSSHNPSAAFLD
QHYDDCEDCQDSDRFSSSSTSSSDSSLNDIPPSSQIAALVENVLGIMTSV
QTIRKHPVLSTVLWLLGGTVDEKSAGCKTCSSPSSPSTTTSSSSNPRISR
NNNQLDNYEAHYQRKNSCSSNSSSDGRNHDIRRLRWKTAADGGAPLAEPP
DANANDRVVYFEEDSRRSCSSGNDGSGGDERPSSAVSGSGSTFGMASGGD
SFQGGLLGGEEGGSIAVERIMHVDRVEQDDLEEMKGGGRRTRRRGSGANS
DSASAAAAGAMSSQHHRYLDHVNNAGVGYLPHHLHEQQGGGGGGREGGGD
SDVSPQWGWYVTLTPPKPEFFNTSSSIKSNNNNNKNGNNYQYQQQQQQQQ
QQQQGVKHHHHRHRHYSRASDALRPSMT*
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mRNA from alignment at scaffold_10:282138..284008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4318 ID=mRNA_4318|Name=jgi.p|Nanoce1779_2|21291|organism=Nannochloropsis oceanica|type=mRNA|length=1871bp|location=Sequence derived from alignment at scaffold_10:282138..284008- (Nannochloropsis oceanica)
CCTGCTCCACGCCATCCCTACACACACGCATGTCACAGGTGCTTCAGGCT
CTATCGTGGACACGGCTTTGGAAGACTGGGGTAGAAGGCGTTCAAAGCTT
GTTGACACATCGAGAAATGCTCTTGGCGGCGCGCGTCCATCTCCTGCTGT
GTGTGCGGGGCACCGGTGTCCTGTGCATGAATGCATAGAGCCACATCTTC
ACATCGAGGTACCCGCTGTAACACTAACTGGGAGAATCGTCACTGTGGAG
GGGAGGCACAGCCCCTGGACTGGAGCACGGGATTTGCCACCTCCTTTTCC
TCTCACAATCCTTCAGCCGCTTTTTTGGACCAGCACTACGACGACTGCGA
GGACTGCCAAGACAGCGATCGTTTCAGCAGCAGCAGCACAAGCAGCAGTG
ACTCCTCATTAAACGACATTCCGCCGTCGTCTCAGATCGCAGCATTGGTG
GAAAACGTTTTAGGCATCATGACAAGTAAGTCCCCCTCTTCGACCGACGA
AAGTCGGCCATTCCCTGGTTCAACCCTGGTACCGATTCTCCGCCCTTTCC
CCCTTCCTTCCCCATCACTGTAGGTGTGCAGACCATCCGGAAGCACCCCG
TACTCTCTACAGTCCTTTGGTTGCTCGGGGGAACAGTAGACGAAAAATCC
GCCGGATGCAAGACCTGCTCTTCCCCCTCCTCCCCCTCCACCACCACATC
CTCCTCCTCTAACCCCCGCATCTCACGCAACAACAATCAGTTGGACAACT
ATGAGGCACACTACCAGCGGAAGAACAGCTGCAGCAGCAACAGCAGCAGC
GATGGCCGGAATCATGACATAAGGCGGTTGCGCTGGAAAACGGCAGCCGA
TGGTGGTGCCCCGTTAGCAGAACCGCCAGATGCGAATGCGAATGATCGAG
TTGTTTATTTTGAGGAGGACAGTCGTCGAAGCTGTAGCAGCGGAAATGAT
GGTAGTGGGGGGGATGAGAGGCCTTCCTCGGCAGTATCCGGGTCAGGGTC
AACTTTTGGTATGGCCTCAGGGGGTGACTCGTTTCAGGGGGGGTTGTTGG
GAGGGGAGGAAGGAGGGTCGATAGCCGTGGAGAGGATTATGCATGTGGAT
AGGGTAGAGCAGGATGATTTGGAGGAGATGAAGGGAGGGGGGAGGAGGAC
GAGGCGAAGAGGTAGTGGTGCGAATAGTGATTCAGCGAGTGCGGCTGCCG
CTGGGGCTATGAGCAGTCAGCACCATCGGTATTTGGATCATGTTAATAAT
GCTGGTGTAGGATACTTGCCGCATCACTTGCATGAGCAGCAGGGAGGAGG
AGGAGGTGGGAGGGAAGGAGGGGGTGACTCAGACGTCTCGCCGCAATGGG
GATGGTATGTTACTCTGACGCCGCCCAAGCCCGAGTTCTTTAACACCAGC
AGCAGTATTAAGAGCAACAACAACAATAACAAAAACGGGAACAACTACCA
ATATCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGGGGGTGAAAC
ATCACCACCATCGCCATCGTCACTACTCCCGCGCCTCGGATGCACTGCGG
CCAAGCATGACCTAATGTGATTGTCTTGAAGGGTGGAGTGAGGACCGAAC
TTGACCTGATGTAAAGGGGGGAAGAAAGAAGGGGAAGGGGGGGTCTCATC
ATCATTTTTTGCGCCCCAATATGACGTGAATTTTTGGGTCTTTTTCACTG
AGGGATGTTAGTAGAAGGAGAGAGGGATATGGAGAGATAAGGGGGCTTTG
AGTGGCAAAAGTAGTTTGTGAATGAGTCCGTGCATGCATGAGAGTGATGA
TTTTTGATGGGAGAGCAAACAAAAGAGGGGGGGATGAGCAGGTGATTGCT
GATGATTTTTTTCAGGGGAGA
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Coding sequence (CDS) from alignment at scaffold_10:282138..284008-

>mRNA_4318 ID=mRNA_4318|Name=jgi.p|Nanoce1779_2|21291|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_10:282138..284008- (Nannochloropsis oceanica)
GTGTGCAGACCATCCGGAAGCACCCCGTACTCTCTACAGTCCTTTGGTTG
CTCGGGGGAACAGTAGACGAAAAATCCGCCGGATGCAAGACCTGCTCTTC
CCCCTCCTCCCCCTCCACCACCACATCCTCCTCCTCTAACCCCCGCATCT
CACGCAACAACAATCAGTTGGACAACTATGAGGCACACTACCAGCGGAAG
AACAGCTGCAGCAGCAACAGCAGCAGCGATGGCCGGAATCATGACATAAG
GCGGTTGCGCTGGAAAACGGCAGCCGATGGTGGTGCCCCGTTAGCAGAAC
CGCCAGATGCGAATGCGAATGATCGAGTTGTTTATTTTGAGGAGGACAGT
CGTCGAAGCTGTAGCAGCGGAAATGATGGTAGTGGGGGGGATGAGAGGCC
TTCCTCGGCAGTATCCGGGTCAGGGTCAACTTTTGGTATGGCCTCAGGGG
GTGACTCGTTTCAGGGGGGGTTGTTGGGAGGGGAGGAAGGAGGGTCGATA
GCCGTGGAGAGGATTATGCATGTGGATAGGGTAGAGCAGGATGATTTGGA
GGAGATGAAGGGAGGGGGGAGGAGGACGAGGCGAAGAGGTAGTGGTGCGA
ATAGTGATTCAGCGAGTGCGGCTGCCGCTGGGGCTATGAGCAGTCAGCAC
CATCGGTATTTGGATCATGTTAATAATGCTGGTGTAGGATACTTGCCGCA
TCACTTGCATGAGCAGCAGGGAGGAGGAGGAGGTGGGAGGGAAGGAGGGG
GTGACTCAGACGTCTCGCCGCAATGGGGATGGTATGTTACTCTGACGCCG
CCCAAGCCCGAGTTCTTTAACACCAGCAGCAGTATTAAGAGCAACAACAA
CAATAACAAAAACGGGAACAACTACCAATATCAGCAGCAGCAGCAACAAC
AACAACAACAGCAGCAGGGGGTGAAACATCACCACCATCGCCATCGTCAC
TACTCCCGCGCCTCGGATGCACTGCGGCCAAGCATGACCTAAATGCATAG
AGCCACATCTTCACATCGAGGTACCCGCTGTAACACTAACTGGGAGAATC
GTCACTGTGGAGGGGAGGCACAGCCCCTGGACTGGAGCACGGGATTTGCC
ACCTCCTTTTCCTCTCACAATCCTTCAGCCGCTTTTTTGGACCAGCACTA
CGACGACTGCGAGGACTGCCAAGACAGCGATCGTTTCAGCAGCAGCAGCA
CAAGCAGCAGTGACTCCTCATTAAACGACATTCCGCCGTCGTCTCAGATC
GCAGCATTGGTGGAAAACGTTTTAGGCATCATGACAAGTGTGCAGACCAT
CCGGAAGCACCCCGTACTCTCTACAGTCCTTTGGTTGCTCGGGGGAACAG
TAGACGAAAAATCCGCCGGATGCAAGACCTGCTCTTCCCCCTCCTCCCCC
TCCACCACCACATCCTCCTCCTCTAACCCCCGCATCTCACGCAACAACAA
TCAGTTGGACAACTATGAGGCACACTACCAGCGGAAGAACAGCTGCAGCA
GCAACAGCAGCAGCGATGGCCGGAATCATGACATAAGGCGGTTGCGCTGG
AAAACGGCAGCCGATGGTGGTGCCCCGTTAGCAGAACCGCCAGATGCGAA
TGCGAATGATCGAGTTGTTTATTTTGAGGAGGACAGTCGTCGAAGCTGTA
GCAGCGGAAATGATGGTAGTGGGGGGGATGAGAGGCCTTCCTCGGCAGTA
TCCGGGTCAGGGTCAACTTTTGGTATGGCCTCAGGGGGTGACTCGTTTCA
GGGGGGGTTGTTGGGAGGGGAGGAAGGAGGGTCGATAGCCGTGGAGAGGA
TTATGCATGTGGATAGGGTAGAGCAGGATGATTTGGAGGAGATGAAGGGA
GGGGGGAGGAGGACGAGGCGAAGAGGTAGTGGTGCGAATAGTGATTCAGC
GAGTGCGGCTGCCGCTGGGGCTATGAGCAGTCAGCACCATCGGTATTTGG
ATCATGTTAATAATGCTGGTGTAGGATACTTGCCGCATCACTTGCATGAG
CAGCAGGGAGGAGGAGGAGGTGGGAGGGAAGGAGGGGGTGACTCAGACGT
CTCGCCGCAATGGGGATGGTATGTTACTCTGACGCCGCCCAAGCCCGAGT
TCTTTAACACCAGCAGCAGTATTAAGAGCAACAACAACAATAACAAAAAC
GGGAACAACTACCAATATCAGCAGCAGCAGCAACAACAACAACAACAGCA
GCAGGGGGTGAAACATCACCACCATCGCCATCGTCACTACTCCCGCGCCT
CGGATGCACTGCGGCCAAGCATGACCTAAATGCATAGAGCCACATCTTCA
CATCGAGGTACCCGCTGTAACACTAACTGGGAGAATCGTCACTGTGGAGG
GGAGGCACAGCCCCTGGACTGGAGCACGGGATTTGCCACCTCCTTTTCCT
CTCACAATCCTTCAGCCGCTTTTTTGGACCAGCACTACGACGACTGCGAG
GACTGCCAAGACAGCGATCGTTTCAGCAGCAGCAGCACAAGCAGCAGTGA
CTCCTCATTAAACGACATTCCGCCGTCGTCTCAGATCGCAGCATTGGTGG
AAAACGTTTTAGGCATCATGACAA
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Synonyms
Publications