jgi.p|Nanoce1779_2|588719, mRNA_4317 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588719
Unique NamemRNA_4317
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1555
Alignment locationscaffold_10:281058..282612 +

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Properties
Property NameValue
TranscriptId588805
TrackFilteredModels2
ProteinId588719
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:281058..282612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588719gene_4317Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588719mRNA_4317-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4317CDS_4317Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4317 ID=mRNA_4317|Name=jgi.p|Nanoce1779_2|588719|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp
TGTAGGTGCTCACTTTGTTGACTTGTTGATAATTGTAGCCTCTAACTCCT
TTCTTGTCTTTTTCTCTCGTTTCATGCTTTCCCTTGTGGTTAGGCTTTCG
TTCATGTTCTTTTTGTTCGTTTCTGTTGTGGCAGCAGGTAGCTGGCTCCT
GGTGCACGGAGTCTGAACGCCTTTCCCCTTCCCTCTTTCCCCCATAGCCC
AATCAATCCCCATACGTTCTGTCACTGCTGACCCGTCTTCCCTCCCTCCC
TTTTTCCGTCTCACGTCTTTCTAATCTGTGCCATGGGGAGGAAGTTCTTT
TTTTCTACACTCTCAAAACTGCTGCCCTGTCCTTGCTGCTGGTGCTGCTG
CTGCCACTGCTGTTGTTCTTCCTGCCCGCCCCTAATGGAGCCGATCTTTT
TTCTCTTCCTTTGTTGTCATCGCATCCTCACCTTAACTCTTTCGGATGGA
TGATCATTCAACTTGCTGGCGGTGGTCGTGGGGACATTTTCTTGCTACAT
ACATCAACGGGTAGGAAAGGCAGCTTCCCCTATCTGTCCGTGCCTGAATT
ATTGCGTGCGTGCTTCCTTCATCCCTGCCGCGTCTTCGCGATTCCTCCTC
CCACATATCCCCGCCAACATTCATTCTCTCTCACATTTTCTCTTTCTTTA
TGTCTCGGCGTCCCTTGTCTCTGTACTACTACTATTTCCCCAATTTCATT
CTTCCATGGTTCATTCTTTTTCTTCATCTTCTTCTTTTTCCATTTTGTTG
TCGTCTTCTCGTCCTTCTACTACTATGTCTTCAACTTCTTCTCCTTCTCC
TTATTCGTACGAAAAACTGTTGTCGGTTGAGCCTGCTTTGTCTTTGGAGC
GTTGAATTGTAGAGCCCGGGGAAAGGGCTGCTACTGCTGCTGGTGCTGCT
GCAGCATCTGTGTGTGTACACGCGTCTTATTGTTTAAATTTTTACCCTCT
TCCCGCTCGCCACAGGGAGGCGCTGCGCCTCGGTGTCGCTCTTGCTTTAT
GCTCCTGTGAAGGCTTCTTTGGATAAAAAGTTTTTTAAAAACCGATGACG
ATGCTCCAAAACCACACACACTTTTTTCTTTCTCCCCTGAAAAAAATCAT
CAGCAATCACCTGCTCATCCCCCCCTCTTTTGTTTGCTCTCCCATCAAAA
ATCATCACTCTCATGCATGCACGGACTCATTCACAAACTACTTTTGCCAC
TCAAAGCCCCCTTATCTCTCCATATCCCTCTCTCCTTCTACTAACATCCC
TCAGTGAAAAAGACCCAAAAATTCACGTCATATTGGGGCGCAAAAAATGA
TGATGAGACCCCCCCTTCCCCTTCTTTCTTCCCCCCTTTACATCAGGTCA
AGTTCGGTCCTCACTCCACCCTTCAAGACAATCACATTAGGTCATGCTTG
GCCGCAGTGCATCCGAGGCGCGGGAGTAGTGACGATGGCGATGGTGGTGA
TGTTTCACCCCCTGCTGCTGTTGTTGTTGTTGTTGCTGCTGCTGCTGATA
TTGGTAGTTGTTCCCGTTTTTGTTATTGTTGTTGTTGCTCTTAATACTGC
TGCTG
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protein sequence of jgi.p|Nanoce1779_2|588719

>mRNA_4317-protein ID=mRNA_4317-protein|Name=jgi.p|Nanoce1779_2|588719|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MIIQLAGGGRGDIFLLHTSTGRKGSFPYLSVPELLRACFLHPCRVFAIPP
PTYPRQHSFSLTFSLSLCLGVPCLCTTTISPISFFHGSFFFFIFFFFHFV
VVFSSFYYYVFNFFSFSLFVRKTVVG*
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mRNA from alignment at scaffold_10:281058..282612+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4317 ID=mRNA_4317|Name=jgi.p|Nanoce1779_2|588719|organism=Nannochloropsis oceanica|type=mRNA|length=1555bp|location=Sequence derived from alignment at scaffold_10:281058..282612+ (Nannochloropsis oceanica)
TGTAGGTGCTCACTTTGTTGACTTGTTGATAATTGTAGCCTCTAACTCCT
TTCTTGTCTTTTTCTCTCGTTTCATGCTTTCCCTTGTGGTTAGGCTTTCG
TTCATGTTCTTTTTGTTCGTTTCTGTTGTGGCAGCAGGTAGCTGGCTCCT
GGTGCACGGAGTCTGAACGCCTTTCCCCTTCCCTCTTTCCCCCATAGCCC
AATCAATCCCCATACGTTCTGTCACTGCTGACCCGTCTTCCCTCCCTCCC
TTTTTCCGTCTCACGTCTTTCTAATCTGTGCCATGGGGAGGAAGTTCTTT
TTTTCTACACTCTCAAAACTGCTGCCCTGTCCTTGCTGCTGGTGCTGCTG
CTGCCACTGCTGTTGTTCTTCCTGCCCGCCCCTAATGGAGCCGATCTTTT
TTCTCTTCCTTTGTTGTCATCGCATCCTCACCTTAACTCTTTCGGATGGA
TGATCATTCAACTTGCTGGCGGTGGTCGTGGGGACATTTTCTTGCTACAT
ACATCAACGGGTAGGAAAGGCAGCTTCCCCTATCTGTCCGTGCCTGAATT
ATTGCGTGCGTGCTTCCTTCATCCCTGCCGCGTCTTCGCGATTCCTCCTC
CCACATATCCCCGCCAACATTCATTCTCTCTCACATTTTCTCTTTCTTTA
TGTCTCGGCGTCCCTTGTCTCTGTACTACTACTATTTCCCCAATTTCATT
CTTCCATGGTTCATTCTTTTTCTTCATCTTCTTCTTTTTCCATTTTGTTG
TCGTCTTCTCGTCCTTCTACTACTATGTCTTCAACTTCTTCTCCTTCTCC
TTATTCGTACGAAAAACTGTTGTCGGTTGAGCCTGCTTTGTCTTTGGAGC
GTTGAATTGTAGAGCCCGGGGAAAGGGCTGCTACTGCTGCTGGTGCTGCT
GCAGCATCTGTGTGTGTACACGCGTCTTATTGTTTAAATTTTTACCCTCT
TCCCGCTCGCCACAGGGAGGCGCTGCGCCTCGGTGTCGCTCTTGCTTTAT
GCTCCTGTGAAGGCTTCTTTGGATAAAAAGTTTTTTAAAAACCGATGACG
ATGCTCCAAAACCACACACACTTTTTTCTTTCTCCCCTGAAAAAAATCAT
CAGCAATCACCTGCTCATCCCCCCCTCTTTTGTTTGCTCTCCCATCAAAA
ATCATCACTCTCATGCATGCACGGACTCATTCACAAACTACTTTTGCCAC
TCAAAGCCCCCTTATCTCTCCATATCCCTCTCTCCTTCTACTAACATCCC
TCAGTGAAAAAGACCCAAAAATTCACGTCATATTGGGGCGCAAAAAATGA
TGATGAGACCCCCCCTTCCCCTTCTTTCTTCCCCCCTTTACATCAGGTCA
AGTTCGGTCCTCACTCCACCCTTCAAGACAATCACATTAGGTCATGCTTG
GCCGCAGTGCATCCGAGGCGCGGGAGTAGTGACGATGGCGATGGTGGTGA
TGTTTCACCCCCTGCTGCTGTTGTTGTTGTTGTTGCTGCTGCTGCTGATA
TTGGTAGTTGTTCCCGTTTTTGTTATTGTTGTTGTTGCTCTTAATACTGC
TGCTG
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Coding sequence (CDS) from alignment at scaffold_10:281058..282612+

>mRNA_4317 ID=mRNA_4317|Name=jgi.p|Nanoce1779_2|588719|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_10:281058..282612+ (Nannochloropsis oceanica)
ATGATCATTCAACTTGCTGGCGGTGGTCGTGGGGACATTTTCTTGCTACA
TACATCAACGGGTAGGAAAGGCAGCTTCCCCTATCTGTCCGTGCCTGAAT
TATTGCGTGCGTGCTTCCTTCATCCCTGCCGCGTCTTCGCGATTCCTCCT
CCCACATATCCCCGCCAACATTCATTCTCTCTCACATTTTCTCTTTCTTT
ATGTCTCGGCGTCCCTTGTCTCTGTACTACTACTATTTCCCCAATTTCAT
TCTTCCATGGTTCATTCTTTTTCTTCATCTTCTTCTTTTTCCATTTTGTT
GTCGTCTTCTCGTCCTTCTACTACTATGTCTTCAACTTCTTCTCCTTCTC
CTTATTCGTACGAAAAACTGTTGTCGGTTGA
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Synonyms
Publications