jgi.p|Nanoce1779_2|588718, mRNA_4316 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588718
Unique NamemRNA_4316
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1163
Alignment locationscaffold_10:279899..281061 +

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Properties
Property NameValue
TranscriptId588804
TrackFilteredModels2
ProteinId588718
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:279899..281061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588718gene_4316Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588718mRNA_4316-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4316CDS_4316Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4316 ID=mRNA_4316|Name=jgi.p|Nanoce1779_2|588718|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTT
AATTGTGGGGGGAAAGAGACACTTTCCTCTTGGAGGGATTGGCCGAGGAG
AACTGGAGGAAGGAAGGGGTGGCGGCTTAGGAGGGCGTTCCTATAAGGAA
AACCAGGCACCTCCACTCCAAAAAATCCTCATCTCCTCGTCCAGCAAATC
GTCTTCCACCTCCCCCCTCCCCCCTCCTGCCCTTCCGCCTTCCCTCCCTC
CCTTATCCAGCCTCCCCATTGACCCCAAGCTGGGCGACACTTATCAACGG
CACCCGGAGGGCATCGTCATCCTCCCCACTTCCCTCCCTCATTCCATGCT
AGGTAAGCTGGACGAATTCCTCCTGCGATTCAACTGCCGTGTCACTCGCG
TCCCAGGTCCGGACGTCACGCACGTCGTGGCCCGTGCAGATGCCAAAAGA
AGGGCCGAAACCCGCACCCTAAAGTACCTCCACGGACTGCTCCAACGCCG
GTGGGTGGTCGGCCCCAGCTGGCTTTCGGACTCCCTCCTTAAGGGCAAAA
TAGAGCGAGAGGTCAAGTACGAATTAATGGGAGACCCGAAAGCAAGCGAG
CCCTCCGCGCCTCTGAAGGCCAGACTGAGCCGTTACCGACGAATGCCGTT
GTTATTTCAAAAATACGATGTTTATTTTTGGGGTGATTTCCCCCCTCCGA
GGCCGACCAGGAAGGACCTCGAAAGCCTGGTGGTGGTTGGAGGGGGGAGG
TTGGTCAAGGCATGGGTGGAGGGAGGGGAGGGAAGAAAGTGTGTGGTGAT
TTGTAACAGTGTCCCGGAGTCTGGAGGAGGTAGGGAGGGAGGAATGGAGG
GAGGGGGACTTCCTGAGATGCTAAAGGGGGAAGGAACGGTTGTGGTATCG
TCGGATTGGCTGTTGGACAGCATAAGCAATTACCGCGTGTTGGGATATAG
TAAATTCCAGGTTTTGCCAGGAAAAGAGAAAACGAGAAAATGAGAAAATG
AGAAATAAAGTTACTTGATTGGGACATAGAATAGGCAAAGAGGAAAAATG
TAGAGGAACGAAGGTAGGTAGATTCTTGTTGGAGAAAGAAAGAAGGAGAT
AGTTCGAGAAGTGGCAGAAATACCCTTCTGGGAAAAGAATGACGAAAAAC
GACATTTTGTGTA
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protein sequence of jgi.p|Nanoce1779_2|588718

>mRNA_4316-protein ID=mRNA_4316-protein|Name=jgi.p|Nanoce1779_2|588718|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MLGKLDEFLLRFNCRVTRVPGPDVTHVVARADAKRRAETRTLKYLHGLLQ
RRWVVGPSWLSDSLLKGKIEREVKYELMGDPKASEPSAPLKARLSRYRRM
PLLFQKYDVYFWGDFPPPRPTRKDLESLVVVGGGRLVKAWVEGGEGRKCV
VICNSVPESGGGREGGMEGGGLPEMLKGEGTVVVSSDWLLDSISNYRVLG
YSKFQVLPGKEKTRK*
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mRNA from alignment at scaffold_10:279899..281061+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4316 ID=mRNA_4316|Name=jgi.p|Nanoce1779_2|588718|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp|location=Sequence derived from alignment at scaffold_10:279899..281061+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTT
AATTGTGGGGGGAAAGAGACACTTTCCTCTTGGAGGGATTGGCCGAGGAG
AACTGGAGGAAGGAAGGGGTGGCGGCTTAGGAGGGCGTTCCTATAAGGAA
AACCAGGCACCTCCACTCCAAAAAATCCTCATCTCCTCGTCCAGCAAATC
GTCTTCCACCTCCCCCCTCCCCCCTCCTGCCCTTCCGCCTTCCCTCCCTC
CCTTATCCAGCCTCCCCATTGACCCCAAGCTGGGCGACACTTATCAACGG
CACCCGGAGGGCATCGTCATCCTCCCCACTTCCCTCCCTCATTCCATGCT
AGGTAAGCTGGACGAATTCCTCCTGCGATTCAACTGCCGTGTCACTCGCG
TCCCAGGTCCGGACGTCACGCACGTCGTGGCCCGTGCAGATGCCAAAAGA
AGGGCCGAAACCCGCACCCTAAAGTACCTCCACGGACTGCTCCAACGCCG
GTGGGTGGTCGGCCCCAGCTGGCTTTCGGACTCCCTCCTTAAGGGCAAAA
TAGAGCGAGAGGTCAAGTACGAATTAATGGGAGACCCGAAAGCAAGCGAG
CCCTCCGCGCCTCTGAAGGCCAGACTGAGCCGTTACCGACGAATGCCGTT
GTTATTTCAAAAATACGATGTTTATTTTTGGGGTGATTTCCCCCCTCCGA
GGCCGACCAGGAAGGACCTCGAAAGCCTGGTGGTGGTTGGAGGGGGGAGG
TTGGTCAAGGCATGGGTGGAGGGAGGGGAGGGAAGAAAGTGTGTGGTGAT
TTGTAACAGTGTCCCGGAGTCTGGAGGAGGTAGGGAGGGAGGAATGGAGG
GAGGGGGACTTCCTGAGATGCTAAAGGGGGAAGGAACGGTTGTGGTATCG
TCGGATTGGCTGTTGGACAGCATAAGCAATTACCGCGTGTTGGGATATAG
TAAATTCCAGGTTTTGCCAGGAAAAGAGAAAACGAGAAAATGAGAAAATG
AGAAATAAAGTTACTTGATTGGGACATAGAATAGGCAAAGAGGAAAAATG
TAGAGGAACGAAGGTAGGTAGATTCTTGTTGGAGAAAGAAAGAAGGAGAT
AGTTCGAGAAGTGGCAGAAATACCCTTCTGGGAAAAGAATGACGAAAAAC
GACATTTTGTGTA
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Coding sequence (CDS) from alignment at scaffold_10:279899..281061+

>mRNA_4316 ID=mRNA_4316|Name=jgi.p|Nanoce1779_2|588718|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_10:279899..281061+ (Nannochloropsis oceanica)
ATGCTAGGTAAGCTGGACGAATTCCTCCTGCGATTCAACTGCCGTGTCAC
TCGCGTCCCAGGTCCGGACGTCACGCACGTCGTGGCCCGTGCAGATGCCA
AAAGAAGGGCCGAAACCCGCACCCTAAAGTACCTCCACGGACTGCTCCAA
CGCCGGTGGGTGGTCGGCCCCAGCTGGCTTTCGGACTCCCTCCTTAAGGG
CAAAATAGAGCGAGAGGTCAAGTACGAATTAATGGGAGACCCGAAAGCAA
GCGAGCCCTCCGCGCCTCTGAAGGCCAGACTGAGCCGTTACCGACGAATG
CCGTTGTTATTTCAAAAATACGATGTTTATTTTTGGGGTGATTTCCCCCC
TCCGAGGCCGACCAGGAAGGACCTCGAAAGCCTGGTGGTGGTTGGAGGGG
GGAGGTTGGTCAAGGCATGGGTGGAGGGAGGGGAGGGAAGAAAGTGTGTG
GTGATTTGTAACAGTGTCCCGGAGTCTGGAGGAGGTAGGGAGGGAGGAAT
GGAGGGAGGGGGACTTCCTGAGATGCTAAAGGGGGAAGGAACGGTTGTGG
TATCGTCGGATTGGCTGTTGGACAGCATAAGCAATTACCGCGTGTTGGGA
TATAGTAAATTCCAGGTTTTGCCAGGAAAAGAGAAAACGAGAAAATGA
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Synonyms
Publications