jgi.p|Nanoce1779_2|630194, mRNA_4315 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630194
Unique Name	mRNA_4315
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1194
Alignment location	scaffold_10:278021..279311 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630280
Track	FilteredModels2
ProteinId	630194

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:278021..279311 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630194	gene_4315	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630194	mRNA_4315-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4315	CDS_4315	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:278021..279311+
coding sequence from alignment at scaffold_10:278021..279311+

mRNA sequence

>mRNA_4315 ID=mRNA_4315|Name=jgi.p|Nanoce1779_2|630194|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp
ACAGCATGAATGACGACGATGATGGGCAACAGCGGAGGAGCGTCAATCCA
TACCTCATCTTATCCGCCGGGGCCACTCCTCCACCTCCATTTCCTCCCGC
CGCTACCGTTGCTCCCGCCACCGCAGCAGCAGCAGCAAATGACGACGAGG
GCGAGGCTTTGCCTGCTGCTGCCAGAGCCGCTGCAGCTCCCAAGTTGACC
GCTTGTCATCCCCTCGATGTGCTTCAGGTTGGGGAGGTGTGGCGGAGGGG
CTTAAAAGGCTTGGCTCAGAGCCTCAAGTGTCCAATTTGCCTTGGACTTA
TCCACGACGCTGCCGTCTCCCCCTGCTACCACCTAGCCTGCAAACCCTGC
TGGGACCTTCTCATCCGCTCCTCTGGTCCACAACCCGCCTGCCCGATCTG
CAAGGAGGGCGTTTCTAGGCGCGCCGTCACCGACACCCCGTTGTTTAATT
CCCTCTCTGCGGCCTTGCAAGCTGGCGTTCCTTCTTTTGGTCTCTCCATT
GATGACAGCTGTCATGTCTCCGATGAGATATTGCGGGCGGCGAGGGCCAA
AAAAAGGGCCGAGGGGACGGAGGAGGAGGGAGGCAGGGTGGGAGGGAGGA
TGAGTCAGGAGGCCTTGAGAGCGCTGGTGGCTGCCGGGCCTGTCACCAGA
CGAGTAGCCGCCTCTGTTTGTTTCTCTCGGCGTTCCTCGTCCTCCCATCC
TTCCTCGTCTCCCTCATCAACGTCACTGGGAGAGAACTCGACGACGATGG
GAAGGGAGAGAATGAAGGGGGGAGGGAGGGTGTTGATGCCGGTGCAGTCT
CGGGAGCGGGCACGGGGGAAGGAGACGGAAGAAGAGGATTACGGGCGGCG
GTATCAGGTGCGAGGAGTAGATAGGAAAAAGAGGAAACAAGAGGAAGAAG
GGAATGAGTCAGAAGAGGAGGGGGAAGAAGGAGCGGAAGACCGGGCCCAC
GGGGTGGGCGGCAAGCACCAGCCTCAAGAGGCGGGAGAGGAGGCCGATGG
CTTCGTCGCCTTGACATCCACCTCACCCATTGCTTCTGGCAGCAGCACCA
CAGCCGGCAATGGCGGGCCCTCCACCACTTCCATCTCCTCAGCTTCGGAT
GTCAAATCACACCACAACCAACATAGCAACAACAGCGGGGACGAGGGCGA
GGACGTAATGGAGGAAGAGGACTCTGACGAAGAAGACAGTGATG

protein sequence of jgi.p|Nanoce1779_2|630194

>mRNA_4315-protein ID=mRNA_4315-protein|Name=jgi.p|Nanoce1779_2|630194|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MNDDDDGQQRRSVNPYLILSAGATPPPPFPPAATVAPATAAAAANDDEGE
ALPAAARAAAAPKLTACHPLDVLQVGEVWRRGLKGLAQSLKCPICLGLIH
DAAVSPCYHLACKPCWDLLIRSSGPQPACPICKEGVSRRAVTDTPLFNSL
SAALQAGVPSFGLSIDDSCHVSDEILRAARAKKRAEGTEEEGGRVGGRMS
QEALRALVAAGPVTRRVAASVCFSRRSSSSHPSSSPSSTSLGENSTTMGR
ERMKGGGRVLMPVQSRERARGKETEEEDYGRRYQVRGVDRKKRKQEEEGN
ESEEEGEEGAEDRAHGVGGKHQPQEAGEEADGFVALTSTSPIASGSSTTA
GNGGPSTTSISSASDVKSHHNQHSNNSGDEGEDVMEEEDSDEEDSD

mRNA from alignment at scaffold_10:278021..279311+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4315 ID=mRNA_4315|Name=jgi.p|Nanoce1779_2|630194|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp|location=Sequence derived from alignment at scaffold_10:278021..279311+ (Nannochloropsis oceanica)
ACAGCATGAATGACGACGATGATGGGCAACAGCGGAGGAGCGTCAATCCA
TACCTCATCTTATCCGCCGGGGCCACTCCTCCACCTCCATTTCCTCCCGC
CGCTACCGTTGCTCCCGCCACCGCAGCAGCAGCAGCAAATGACGACGAGG
GCGAGGCTTTGCCTGCTGCTGCCAGAGCCGCTGCAGCTCCCAAGTTGACC
GCTTGTCATCCCCTCGATGTGCTTCAGGTTGGGGAGGTGTGGCGGAGGGG
CTTAAAAGGCTTGGCTCAGAGCCTCAAGTGTCCAATTTGCCTTGGGTACG
TAGTCATTCGGGTGCCTGCAATTTTTCGTCATCTCCCTCCCCTCTTCCCC
CTACCCACTCCTACCCTCATTCCTTCCACCCTCTTTCGACAGACTTATCC
ACGACGCTGCCGTCTCCCCCTGCTACCACCTAGCCTGCAAACCCTGCTGG
GACCTTCTCATCCGCTCCTCTGGTCCACAACCCGCCTGCCCGATCTGCAA
GGAGGGCGTTTCTAGGCGCGCCGTCACCGACACCCCGTTGTTTAATTCCC
TCTCTGCGGCCTTGCAAGCTGGCGTTCCTTCTTTTGGTCTCTCCATTGAT
GACAGCTGTCATGTCTCCGATGAGATATTGCGGGCGGCGAGGGCCAAAAA
AAGGGCCGAGGGGACGGAGGAGGAGGGAGGCAGGGTGGGAGGGAGGATGA
GTCAGGAGGCCTTGAGAGCGCTGGTGGCTGCCGGGCCTGTCACCAGACGA
GTAGCCGCCTCTGTTTGTTTCTCTCGGCGTTCCTCGTCCTCCCATCCTTC
CTCGTCTCCCTCATCAACGTCACTGGGAGAGAACTCGACGACGATGGGAA
GGGAGAGAATGAAGGGGGGAGGGAGGGTGTTGATGCCGGTGCAGTCTCGG
GAGCGGGCACGGGGGAAGGAGACGGAAGAAGAGGATTACGGGCGGCGGTA
TCAGGTGCGAGGAGTAGATAGGAAAAAGAGGAAACAAGAGGAAGAAGGGA
ATGAGTCAGAAGAGGAGGGGGAAGAAGGAGCGGAAGACCGGGCCCACGGG
GTGGGCGGCAAGCACCAGCCTCAAGAGGCGGGAGAGGAGGCCGATGGCTT
CGTCGCCTTGACATCCACCTCACCCATTGCTTCTGGCAGCAGCACCACAG
CCGGCAATGGCGGGCCCTCCACCACTTCCATCTCCTCAGCTTCGGATGTC
AAATCACACCACAACCAACATAGCAACAACAGCGGGGACGAGGGCGAGGA
CGTAATGGAGGAAGAGGACTCTGACGAAGAAGACAGTGATG

Coding sequence (CDS) from alignment at scaffold_10:278021..279311+

>mRNA_4315 ID=mRNA_4315|Name=jgi.p|Nanoce1779_2|630194|organism=Nannochloropsis oceanica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_10:278021..279311+ (Nannochloropsis oceanica)
ATGAATGACGACGATGATGGGCAACAGCGGAGGAGCGTCAATCCATACCT
CATCTTATCCGCCGGGGCCACTCCTCCACCTCCATTTCCTCCCGCCGCTA
CCGTTGCTCCCGCCACCGCAGCAGCAGCAGCAAATGACGACGAGGGCGAG
GCTTTGCCTGCTGCTGCCAGAGCCGCTGCAGCTCCCAAGTTGACCGCTTG
TCATCCCCTCGATGTGCTTCAGGTTGGGGAGGTGTGGCGGAGGGGCTTAA
AAGGCTTGGCTCAGAGCCTCAAGTGTCCAATTTGCCTTGGACTTATCCAC
GACGCTGCCGTCTCCCCCTGCTACCACCTAGCCTGCAAACCCTGCTGGGA
CCTTCTCATCCGCTCCTCTGGTCCACAACCCGCCTGCCCGATCTGCAAGG
AGGGCGTTTCTAGGCGCGCCGTCACCGACACCCCGTTGTTTAATTCCCTC
TCTGCGGCCTTGCAAGCTGGCGTTCCTTCTTTTGGTCTCTCCATTGATGA
CAGCTGTCATGTCTCCGATGAGATATTGCGGGCGGCGAGGGCCAAAAAAA
GGGCCGAGGGGACGGAGGAGGAGGGAGGCAGGGTGGGAGGGAGGATGAGT
CAGGAGGCCTTGAGAGCGCTGGTGGCTGCCGGGCCTGTCACCAGACGAGT
AGCCGCCTCTGTTTGTTTCTCTCGGCGTTCCTCGTCCTCCCATCCTTCCT
CGTCTCCCTCATCAACGTCACTGGGAGAGAACTCGACGACGATGGGAAGG
GAGAGAATGAAGGGGGGAGGGAGGGTGTTGATGCCGGTGCAGTCTCGGGA
GCGGGCACGGGGGAAGGAGACGGAAGAAGAGGATTACGGGCGGCGGTATC
AGGTGCGAGGAGTAGATAGGAAAAAGAGGAAACAAGAGGAAGAAGGGAAT
GAGTCAGAAGAGGAGGGGGAAGAAGGAGCGGAAGACCGGGCCCACGGGGT
GGGCGGCAAGCACCAGCCTCAAGAGGCGGGAGAGGAGGCCGATGGCTTCG
TCGCCTTGACATCCACCTCACCCATTGCTTCTGGCAGCAGCACCACAGCC
GGCAATGGCGGGCCCTCCACCACTTCCATCTCCTCAGCTTCGGATGTCAA
ATCACACCACAACCAACATAGCAACAACAGCGGGGACGAGGGCGAGGACG
TAATGGAGGAAGAGGACTCTGACGAAGAAGACAGTGATATGAATGACGAC
GATGATGGGCAACAGCGGAGGAGCGTCAATCCATACCTCATCTTATCCGC
CGGGGCCACTCCTCCACCTCCATTTCCTCCCGCCGCTACCGTTGCTCCCG
CCACCGCAGCAGCAGCAGCAAATGACGACGAGGGCGAGGCTTTGCCTGCT
GCTGCCAGAGCCGCTGCAGCTCCCAAGTTGACCGCTTGTCATCCCCTCGA
TGTGCTTCAGGTTGGGGAGGTGTGGCGGAGGGGCTTAAAAGGCTTGGCTC
AGAGCCTCAAGTGTCCAATTTGCCTTGGACTTATCCACGACGCTGCCGTC
TCCCCCTGCTACCACCTAGCCTGCAAACCCTGCTGGGACCTTCTCATCCG
CTCCTCTGGTCCACAACCCGCCTGCCCGATCTGCAAGGAGGGCGTTTCTA
GGCGCGCCGTCACCGACACCCCGTTGTTTAATTCCCTCTCTGCGGCCTTG
CAAGCTGGCGTTCCTTCTTTTGGTCTCTCCATTGATGACAGCTGTCATGT
CTCCGATGAGATATTGCGGGCGGCGAGGGCCAAAAAAAGGGCCGAGGGGA
CGGAGGAGGAGGGAGGCAGGGTGGGAGGGAGGATGAGTCAGGAGGCCTTG
AGAGCGCTGGTGGCTGCCGGGCCTGTCACCAGACGAGTAGCCGCCTCTGT
TTGTTTCTCTCGGCGTTCCTCGTCCTCCCATCCTTCCTCGTCTCCCTCAT
CAACGTCACTGGGAGAGAACTCGACGACGATGGGAAGGGAGAGAATGAAG
GGGGGAGGGAGGGTGTTGATGCCGGTGCAGTCTCGGGAGCGGGCACGGGG
GAAGGAGACGGAAGAAGAGGATTACGGGCGGCGGTATCAGGTGCGAGGAG
TAGATAGGAAAAAGAGGAAACAAGAGGAAGAAGGGAATGAGTCAGAAGAG
GAGGGGGAAGAAGGAGCGGAAGACCGGGCCCACGGGGTGGGCGGCAAGCA
CCAGCCTCAAGAGGCGGGAGAGGAGGCCGATGGCTTCGTCGCCTTGACAT
CCACCTCACCCATTGCTTCTGGCAGCAGCACCACAGCCGGCAATGGCGGG
CCCTCCACCACTTCCATCTCCTCAGCTTCGGATGTCAAATCACACCACAA
CCAACATAGCAACAACAGCGGGGACGAGGGCGAGGACGTAATGGAGGAAG
AGGACTCTGACGAAGAAGACAGTGAT

Synonyms

Publications