Properties
| Property Name | Value |
|---|
| TranscriptId | 588793 |
| Track | FilteredModels2 |
| ProteinId | 588707 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:268528..271341 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4312 ID=mRNA_4312|Name=jgi.p|Nanoce1779_2|588707|organism=Nannochloropsis oceanica|type=mRNA|length=1916bp
AGACAGGCGACGGCATCTAGCGCAGTCAGGTGCAGAGCATAGCGGACCGG
TCGCGAGAGGAAAGCTACGCGTACGACATCAAGGAGCAAGCAGCAGCAGC
AAGCATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTG
TCTTGGTAGCCATCATGCTACTCATGGAGAATGTGATAGGGCAACAACAA
CAGCAGCTGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCCACGAAGGCG
ACCACCGGGACCCAACGCCATCGAGCTGGGAAAGGAGAATAAGTACGGGG
AATTTTGGCGGGGGTACTGGTTTTCGGGGTGGAATTTCAGGGGTAAGAAC
AAGAAGCTGAAGCAGAAATACGAGAGGGATATTGCGCAACAAGAGAGGCG
CATTGAGGACGCCATCCGTTCGATACGGCAACAGTACGAGGAGGTCCTGG
AGAAAAAGCAAGAAGAGTACGTGGAGAAATACAAGCACCTGCAGTACATT
GAAAACGCGATGGGCGAGGCAGGCATCCCGGTAGACCTGTCGATGGTCTC
TCCCTCTGCCTCCCTGCAGCAAGATTACGCCGAATTCAAACAGCCAGACC
TCAACGGCGACGACAAGATCTCGAGGCGGGAGTTCGACCAGTACATGCGT
CAATACCTAGCAGCCAACCCCGAGTACAGCAAATATGACTACCCTTCTTT
CGATGAGTTTGACAAGGACGGGGATAATTCCATTACCTTCGCGGAGTGGC
AGCAGTACATCCAAGATGCTGAGGCGGCGGCACGTAGGTGGACTTCAGAA
GGGAGGGAGGAGGATTGAGAGGGGCAGAGGGCAGGGTTTGCAAATAAATG
GAGTCTGGAAGTATTGACTATTCTCATGTCCTTGTTATCCCTACGAACTA
CAGTGGCCCAAGAACAGCTCATGTACCAGCAGCAGCAAAAGGGGAAAGCA
ACTGGGCGGCGAAAGTAAAATATGCGTGTGAGCGGGGTTTGTGAGAGGCA
GGTAAGGGTTGCGGTGGGTGAGGGGTGGCACCAGTAAGGGTCAAGTCAGG
AGTAGGGGCAAAGGGCTGTGGATGGGCCGTGTAATGATGGGAAGGCAGAG
AAACCAAATCAGCTTGTCATTAAAGATGCGTGCACGCGAGCTCAGATGCG
CCAGAAAGAGGTGGCTTCATTTTTGTAGATCCCGCCGCAAATTTGGGCCT
CCTTTGTCCTTTCCCATTTTTACATTCATGATGGATGGCACATCACTGTG
TGCATGCCAGCGGCTACGAGACAACATGACAACCAAAAATAGAGTAGAGG
AAGGCTTTAATCGCGCAGACGTAGAGGTCTGCTGGGGAGACAGCAAGATT
GCAGAAAAAGAAGAAAACAGAAAAAGAGATTATATGTTTGGGCTGTCTCC
ATTTTTTTTTGCGTTGAGTCTTTGCAGCACTTGCGAAATGATCTCTTTTT
CGATGTCGAGAGGGTTTCGATGCTTGGGCCCTCACCTCGTTGACCGTTGA
CAGACTCAACTTTGTTCGCTATACTTGTCCAGACCGCCACTTTGCTTGCA
TCGTCTTTGCCTCTGTCCTTCGGTCATTATAAATACACGGTAGTGTGCCC
ATTGAGGCTCATTGTGCGTGCTGTGTGCATGTTTTTGTGGGTCAACGCGC
TCAAGCTCAAAGCGAATAACACACGCTTCTTCTAACGGAAAGAGGCTGAG
TGGCTGGTCATGCAATTTGGTGCCCCAGTACCCGATTCCCCACCGCATCA
CTCCGCAATCACCCAATATGAAAGCTATACTACTAATCGGCAGTCTAGAT
GGTTGAGGTGCCGCGAATCGCAGGACGTGAAGGGTAGCCAAGGGAAGATG
GCACAGGCAGGCGACGCACCTCCCGCCTTGTTTTCCTTTTTGCCTGCTCG
ACGGTCGCCATTAATC back to topprotein sequence of jgi.p|Nanoce1779_2|588707 >mRNA_4312-protein ID=mRNA_4312-protein|Name=jgi.p|Nanoce1779_2|588707|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MAGKGFNQWSTARRLVLVAIMLLMENVIGQQQQQLHRYPGPGGPPPRRRP
PGPNAIELGKENKYGEFWRGYWFSGWNFRGKNKKLKQKYERDIAQQERRI
EDAIRSIRQQYEEVLEKKQEEYVEKYKHLQYIENAMGEAGIPVDLSMVSP
SASLQQDYAEFKQPDLNGDDKISRREFDQYMRQYLAANPEYSKYDYPSFD
EFDKDGDNSITFAEWQQYIQDAEAAARRWTSEGREED* back to topmRNA from alignment at scaffold_10:268528..271341- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4312 ID=mRNA_4312|Name=jgi.p|Nanoce1779_2|588707|organism=Nannochloropsis oceanica|type=mRNA|length=2814bp|location=Sequence derived from alignment at scaffold_10:268528..271341- (Nannochloropsis oceanica)
AGACAGGCGACGGCATCTAGCGCAGTCAGGTGCAGAGCATAGCGGACCGG
TCGCGAGAGGAAAGCTACGCGTACGACATCAAGGAGCAAGCAGCAGCAGC
AAGCATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTG
TCTTGGTAGCCATCATGCTACTCATGGAGGTGTGTGGGCGTGCATGGATG
GGAGGAGGCCAGCTTTTGGGAAGGGCAGGCTGGACTAGAGTTCAGGCATC
ATCATCCATCTAATCTGTTTTAACGTCAACCTGATACAATAGAATGTGAT
AGGGCAACAACAACAGCAGCTGCATCGTTACCCCGGGCCAGGCGGCCCTC
CCCCACGAAGGCGACCACCGGGACCCAACGCCATCGAGCTGGGAAAGGAG
AATAAGTACGTGGGTCGCTTTGATACCCTGTCCAACTTCTGTGCGGCTGT
GCCTAACCCTTGCCCCTTAGTCCCGTTTGAGCCGGGGGGGTCTGATCATT
TTGATTCATTGTCCTATATCTTGACAGGCGGGCCACATATATGGCCGTAG
TAGGGGGAATTTTGGCGGGGGTACTGGTTTTCGGGGTGGAATTTCAGGGG
TAAGAACAAGAAGCTGAAGCAGAAATACGAGAGGGATATTGCGGTACGTG
CCTTTTCGAGTTTTAATTGGTTTGAACGTTGTAGGATGGAGTCATGGGAG
GATGGATTGCGACATATGGAGCTTTTTCTGCCACGCACATCGTTTCGTTT
TGTTTGCATGTTTTTGAGATGCCACGCAAAAGATTCTCAATTTCCCCTCA
CCTCTCTCCCTTCCTCCCTGCGTCCCTCCCACACACCGATCCCAGCAACA
AGAGAGGCGCATTGAGGACGCCATCCGTTCGATACGGCAACAGTACGAGG
AGGTCCTGGAGAAAAAGCAAGAAGAGTACGTGGAGAAATACAAGCACCTG
CAGTACATTGAAGTAAGGAAGGAGGAAGGGAGGAGTTAGGGAAGGAGGGA
TGTAGGGTATGGCAGCTGACGTGGATCATCATATGGATAAAGTGGGGCAC
ACCTGCTACATAATACCATACTAATCTGGAAGACACACGCATAAATATGT
ACACAGGCATAGACTCACACGCACCCTGTCGTTTTGACTCACCCACCTAC
CCATTCACGCACCCACGCACAGAACGCGATGGGCGAGGCAGGCATCCCGG
TAGACCTGTCGATGGTCTCTCCCTCTGCCTCCCTGCAGCAAGATTACGCC
GAATTCAAACAGCCAGACCTCAACGGCGACGACAAGATCTCGAGGCGGGA
GGTAAGTTGAAAAGAGAGGATAGTAGGGCTTGAGAGAGAGGGAGGTTGCT
TCGGCGTCATTTCCCCCGTGGTTGTCCCTTGACAGTTCGAATGGGTACAG
GTCGTCCGTCTTCTAACCCCTCTCCTTTTTATTTTTGTCATCATGATCAT
AGTTTCTTTATATTCCTTTTTATTTTTGGTATTCACCTGTCCCTCCCTCC
TTCCCTCCCTCCTTCCCTCCATCTCCCTAGTTCGACCAGTACATGCGTCA
ATACCTAGCAGCCAACCCCGAGTACAGCAAATATGACTACCCTTCTTTCG
ATGAGTTTGACAAGGACGGGGATAATTCCATTACCTTCGCGGAGTGGCAG
CAGTACATCCAAGATGCTGAGGCGGCGGCACGTAGGTGGACTTCAGAAGG
GAGGGAGGAGGATTGAGAGGGGCAGAGGGCAGGGTTTGCAAATAAATGGA
GTCTGGAAGTATTGACTATTCTCATGTCCTTGTTATCCCTACGAACTACA
GTGGCCCAAGAACAGCTCATGTACCAGCAGCAGCAAAAGGGGAAAGCAAC
TGGGCGGCGAAAGTAAAATATGCGTGTGAGCGGGGTTTGTGAGAGGCAGG
TAAGGGTTGCGGTGGGTGAGGGGTGGCACCAGTAAGGGTCAAGTCAGGAG
TAGGGGCAAAGGGCTGTGGATGGGCCGTGTAATGATGGGAAGGCAGAGAA
ACCAAATCAGCTTGTCATTAAAGATGCGTGCACGCGAGCTCAGATGCGCC
AGAAAGAGGTGGCTTCATTTTTGTAGATCCCGCCGCAAATTTGGGCCTCC
TTTGTCCTTTCCCATTTTTACATTCATGATGGATGGCACATCACTGTGTG
CATGCCAGCGGCTACGAGACAACATGACAACCAAAAATAGAGTAGAGGAA
GGCTTTAATCGCGCAGACGTAGAGGTCTGCTGGGGAGACAGCAAGATTGC
AGAAAAAGAAGAAAACAGAAAAAGAGATTATATGTTTGGGCTGTCTCCAT
TTTTTTTTGCGTTGAGTCTTTGCAGCACTTGCGAAATGATCTCTTTTTCG
ATGTCGAGAGGGTTTCGATGCTTGGGCCCTCACCTCGTTGACCGTTGACA
GACTCAACTTTGTTCGCTATACTTGTCCAGACCGCCACTTTGCTTGCATC
GTCTTTGCCTCTGTCCTTCGGTCATTATAAATACACGGTAGTGTGCCCAT
TGAGGCTCATTGTGCGTGCTGTGTGCATGTTTTTGTGGGTCAACGCGCTC
AAGCTCAAAGCGAATAACACACGCTTCTTCTAACGGAAAGAGGCTGAGTG
GCTGGTCATGCAATTTGGTGCCCCAGTACCCGATTCCCCACCGCATCACT
CCGCAATCACCCAATATGAAAGCTATACTACTAATCGGCAGTCTAGATGG
TTGAGGTGCCGCGAATCGCAGGACGTGAAGGGTAGCCAAGGGAAGATGGC
ACAGGCAGGCGACGCACCTCCCGCCTTGTTTTCCTTTTTGCCTGCTCGAC
GGTCGCCATTAATC back to topCoding sequence (CDS) from alignment at scaffold_10:268528..271341- >mRNA_4312 ID=mRNA_4312|Name=jgi.p|Nanoce1779_2|588707|organism=Nannochloropsis oceanica|type=CDS|length=4284bp|location=Sequence derived from alignment at scaffold_10:268528..271341- (Nannochloropsis oceanica)
TTCGACCAGTACATGCGTCAATACCTAGCAGCCAACCCCGAGTACAGCAA
ATATGACTACCCTTCTTTCGATGAGTTTGACAAGGACGGGGATAATTCCA
TTACCTTCGCGGAGTGGCAGCAGTACATCCAAGATGCTGAGGCGGCGGCA
CGTAGGTGGACTTCAGAAGGGAGGGAGGAGGATTGAAACGCGATGGGCGA
GGCAGGCATCCCGGTAGACCTGTCGATGGTCTCTCCCTCTGCCTCCCTGC
AGCAAGATTACGCCGAATTCAAACAGCCAGACCTCAACGGCGACGACAAG
ATCTCGAGGCGGGAGCAACAAGAGAGGCGCATTGAGGACGCCATCCGTTC
GATACGGCAACAGTACGAGGAGGTCCTGGAGAAAAAGCAAGAAGAGTACG
TGGAGAAATACAAGCACCTGCAGTACATTGAAGGGGAATTTTGGCGGGGG
TACTGGTTTTCGGGGTGGAATTTCAGGGGTAAGAACAAGAAGCTGAAGCA
GAAATACGAGAGGGATATTGCGAATGTGATAGGGCAACAACAACAGCAGC
TGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCCACGAAGGCGACCACCG
GGACCCAACGCCATCGAGCTGGGAAAGGAGAATAAGTACATGGCAGGCAA
GGGGTTCAATCAGTGGTCGACAGCACGGAGACTTGTCTTGGTAGCCATCA
TGCTACTCATGGAGTTCGACCAGTACATGCGTCAATACCTAGCAGCCAAC
CCCGAGTACAGCAAATATGACTACCCTTCTTTCGATGAGTTTGACAAGGA
CGGGGATAATTCCATTACCTTCGCGGAGTGGCAGCAGTACATCCAAGATG
CTGAGGCGGCGGCACGTAGGTGGACTTCAGAAGGGAGGGAGGAGGATTGA
AACGCGATGGGCGAGGCAGGCATCCCGGTAGACCTGTCGATGGTCTCTCC
CTCTGCCTCCCTGCAGCAAGATTACGCCGAATTCAAACAGCCAGACCTCA
ACGGCGACGACAAGATCTCGAGGCGGGAGCAACAAGAGAGGCGCATTGAG
GACGCCATCCGTTCGATACGGCAACAGTACGAGGAGGTCCTGGAGAAAAA
GCAAGAAGAGTACGTGGAGAAATACAAGCACCTGCAGTACATTGAAGGGG
AATTTTGGCGGGGGTACTGGTTTTCGGGGTGGAATTTCAGGGGTAAGAAC
AAGAAGCTGAAGCAGAAATACGAGAGGGATATTGCGAATGTGATAGGGCA
ACAACAACAGCAGCTGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCCAC
GAAGGCGACCACCGGGACCCAACGCCATCGAGCTGGGAAAGGAGAATAAG
TACATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTGT
CTTGGTAGCCATCATGCTACTCATGGAGTTCGACCAGTACATGCGTCAAT
ACCTAGCAGCCAACCCCGAGTACAGCAAATATGACTACCCTTCTTTCGAT
GAGTTTGACAAGGACGGGGATAATTCCATTACCTTCGCGGAGTGGCAGCA
GTACATCCAAGATGCTGAGGCGGCGGCACGTAGGTGGACTTCAGAAGGGA
GGGAGGAGGATTGAAACGCGATGGGCGAGGCAGGCATCCCGGTAGACCTG
TCGATGGTCTCTCCCTCTGCCTCCCTGCAGCAAGATTACGCCGAATTCAA
ACAGCCAGACCTCAACGGCGACGACAAGATCTCGAGGCGGGAGCAACAAG
AGAGGCGCATTGAGGACGCCATCCGTTCGATACGGCAACAGTACGAGGAG
GTCCTGGAGAAAAAGCAAGAAGAGTACGTGGAGAAATACAAGCACCTGCA
GTACATTGAAGGGGAATTTTGGCGGGGGTACTGGTTTTCGGGGTGGAATT
TCAGGGGTAAGAACAAGAAGCTGAAGCAGAAATACGAGAGGGATATTGCG
AATGTGATAGGGCAACAACAACAGCAGCTGCATCGTTACCCCGGGCCAGG
CGGCCCTCCCCCACGAAGGCGACCACCGGGACCCAACGCCATCGAGCTGG
GAAAGGAGAATAAGTACATGGCAGGCAAGGGGTTCAATCAGTGGTCGACA
GCACGGAGACTTGTCTTGGTAGCCATCATGCTACTCATGGAGTTCGACCA
GTACATGCGTCAATACCTAGCAGCCAACCCCGAGTACAGCAAATATGACT
ACCCTTCTTTCGATGAGTTTGACAAGGACGGGGATAATTCCATTACCTTC
GCGGAGTGGCAGCAGTACATCCAAGATGCTGAGGCGGCGGCACGTAGGTG
GACTTCAGAAGGGAGGGAGGAGGATTGAAACGCGATGGGCGAGGCAGGCA
TCCCGGTAGACCTGTCGATGGTCTCTCCCTCTGCCTCCCTGCAGCAAGAT
TACGCCGAATTCAAACAGCCAGACCTCAACGGCGACGACAAGATCTCGAG
GCGGGAGCAACAAGAGAGGCGCATTGAGGACGCCATCCGTTCGATACGGC
AACAGTACGAGGAGGTCCTGGAGAAAAAGCAAGAAGAGTACGTGGAGAAA
TACAAGCACCTGCAGTACATTGAAGGGGAATTTTGGCGGGGGTACTGGTT
TTCGGGGTGGAATTTCAGGGGTAAGAACAAGAAGCTGAAGCAGAAATACG
AGAGGGATATTGCGAATGTGATAGGGCAACAACAACAGCAGCTGCATCGT
TACCCCGGGCCAGGCGGCCCTCCCCCACGAAGGCGACCACCGGGACCCAA
CGCCATCGAGCTGGGAAAGGAGAATAAGTACATGGCAGGCAAGGGGTTCA
ATCAGTGGTCGACAGCACGGAGACTTGTCTTGGTAGCCATCATGCTACTC
ATGGAGTTCGACCAGTACATGCGTCAATACCTAGCAGCCAACCCCGAGTA
CAGCAAATATGACTACCCTTCTTTCGATGAGTTTGACAAGGACGGGGATA
ATTCCATTACCTTCGCGGAGTGGCAGCAGTACATCCAAGATGCTGAGGCG
GCGGCACGTAGGTGGACTTCAGAAGGGAGGGAGGAGGATTGAAACGCGAT
GGGCGAGGCAGGCATCCCGGTAGACCTGTCGATGGTCTCTCCCTCTGCCT
CCCTGCAGCAAGATTACGCCGAATTCAAACAGCCAGACCTCAACGGCGAC
GACAAGATCTCGAGGCGGGAGCAACAAGAGAGGCGCATTGAGGACGCCAT
CCGTTCGATACGGCAACAGTACGAGGAGGTCCTGGAGAAAAAGCAAGAAG
AGTACGTGGAGAAATACAAGCACCTGCAGTACATTGAAGGGGAATTTTGG
CGGGGGTACTGGTTTTCGGGGTGGAATTTCAGGGGTAAGAACAAGAAGCT
GAAGCAGAAATACGAGAGGGATATTGCGAATGTGATAGGGCAACAACAAC
AGCAGCTGCATCGTTACCCCGGGCCAGGCGGCCCTCCCCCACGAAGGCGA
CCACCGGGACCCAACGCCATCGAGCTGGGAAAGGAGAATAAGTACATGGC
AGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAGACTTGTCTTGGTAG
CCATCATGCTACTCATGGAGTTCGACCAGTACATGCGTCAATACCTAGCA
GCCAACCCCGAGTACAGCAAATATGACTACCCTTCTTTCGATGAGTTTGA
CAAGGACGGGGATAATTCCATTACCTTCGCGGAGTGGCAGCAGTACATCC
AAGATGCTGAGGCGGCGGCACGTAGGTGGACTTCAGAAGGGAGGGAGGAG
GATTGAAACGCGATGGGCGAGGCAGGCATCCCGGTAGACCTGTCGATGGT
CTCTCCCTCTGCCTCCCTGCAGCAAGATTACGCCGAATTCAAACAGCCAG
ACCTCAACGGCGACGACAAGATCTCGAGGCGGGAGCAACAAGAGAGGCGC
ATTGAGGACGCCATCCGTTCGATACGGCAACAGTACGAGGAGGTCCTGGA
GAAAAAGCAAGAAGAGTACGTGGAGAAATACAAGCACCTGCAGTACATTG
AAGGGGAATTTTGGCGGGGGTACTGGTTTTCGGGGTGGAATTTCAGGGGT
AAGAACAAGAAGCTGAAGCAGAAATACGAGAGGGATATTGCGAATGTGAT
AGGGCAACAACAACAGCAGCTGCATCGTTACCCCGGGCCAGGCGGCCCTC
CCCCACGAAGGCGACCACCGGGACCCAACGCCATCGAGCTGGGAAAGGAG
AATAAGTACATGGCAGGCAAGGGGTTCAATCAGTGGTCGACAGCACGGAG
ACTTGTCTTGGTAGCCATCATGCTACTCATGGAG back to top
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