jgi.p|Nanoce1779_2|577308, mRNA_431 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577308
Unique Name	mRNA_431
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1369
Alignment location	scaffold_3:1064444..1066428 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577394
Track	FilteredModels2
ProteinId	577308

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1064444..1066428 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577308	gene_431	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577308	mRNA_431-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_431	CDS_431	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1064444..1066428+
coding sequence from alignment at scaffold_3:1064444..1066428+

mRNA sequence

>mRNA_431 ID=mRNA_431|Name=jgi.p|Nanoce1779_2|577308|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp
CAACAGACCCCCAACGCCCGTCGCATATCATGTCTCAGTCTACCCCTCCC
TACGCCATTAAACGGATCTCAGCTGGGCTGTCTGGTCCCCCTGACACGGC
CGTGCATAGTTTTGAGGTGTCGAACGGCTCTCTCAGCATCTCGATGATGG
ACTACGGCGCGACACTCATCTCCGTTCGAGCCCCGGACCGGGACGGCAAA
TTAGACAATGTTACGCTTTTCTCAAATAAATTTGGAAAGAACGAAATGTA
CATGGGTGTAACGGTTGGGCGCGTGGCCAATCGGGTGGCAAACGGCATGT
TTAAGCTGGACGGCAAGGACTACACACTGGCGACCAACAACGGGCCCAAC
AGCCTCCATGGCGGCATTCAAGGCTTTGACAAACGAATGTGGGAAGGCAA
GACATTTAAGAATGATAAGGCTGTGGGCGTCATCTTCACGTTGCACAGCC
CCGACGGCGACGAGGGCTATCCTGGCTTCGTGACGGTGCAGGCAATCTAC
AGCATTCTGATCGACCAGGATGTCCTCGAGATGGATTTTCGGGCAGAAAC
AGACGCGGCTACCCCCATAAACTTGAGTAACCACGCGTACTGGAACCTCG
GTGGGGAAGATGCAGGTGGTAAACACATCCGGAAGGCCCATGACCACTTC
CTCCACGTAAACGCTACACACATCCTGGAAGTAGGACCTAACCAGATCCC
GACTGGCGTGCTACAGCCCGTTGAGGGGACGCCCTTCGACCTCCGTGATG
GCTCAGGATCCCAACTGGGGAATCGCATTCCTCTGATTGATGGAGGGGGC
AAGCCCGGATTCGATCATTGTTACGTGATTGAGGATTATGACCCCGCGGC
GTCACGGAGAGTGACGTCAACGAAGGGAGGCAAGAAGGAGAAAGGGGAAA
ACGTGGACAAGAGGAAACAAGCTGAAGCGCAGGGGGAGATGATGGAGGAG
GAGGAGGAGAGGGAGGAAGGGAAGTCGATTCGGAATCAGGCTCGGTATAT
GGCTAGTCTTACGGAAAAGGAAAGTGGGAGGGTGATGCATGTGTATGGGA
CGCAGCCGGGCTTGCAGATATATACGGCAAATTGGCTAAGTGAGGAGAAG
GGAGAGCAGCACGGGGCGGTTTGTCTTGAGACAGAGTTTTTCCCGAATGC
GATAAATGATCCTACGGAGGGGGCGGCGGAGAGCGTGGTTTTGCGGCCTG
GGCAGGTGTACCGGCATTTTACCTACCATGTGTTTCAAACAATCCCGAGA
GAACGAGAGTGATAGTGAGGACGGCACGAACGAGGTGCTGGGATGTACAG
TGTACAAGGGGGGGAAAAGGATGGAGCATAACAAGCTACGGAAAGCGAAA
TTTGGTAGACAGATAGATG

protein sequence of jgi.p|Nanoce1779_2|577308

>mRNA_431-protein ID=mRNA_431-protein|Name=jgi.p|Nanoce1779_2|577308|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MSQSTPPYAIKRISAGLSGPPDTAVHSFEVSNGSLSISMMDYGATLISVR
APDRDGKLDNVTLFSNKFGKNEMYMGVTVGRVANRVANGMFKLDGKDYTL
ATNNGPNSLHGGIQGFDKRMWEGKTFKNDKAVGVIFTLHSPDGDEGYPGF
VTVQAIYSILIDQDVLEMDFRAETDAATPINLSNHAYWNLGGEDAGGKHI
RKAHDHFLHVNATHILEVGPNQIPTGVLQPVEGTPFDLRDGSGSQLGNRI
PLIDGGGKPGFDHCYVIEDYDPAASRRVTSTKGGKKEKGENVDKRKQAEA
QGEMMEEEEEREEGKSIRNQARYMASLTEKESGRVMHVYGTQPGLQIYTA
NWLSEEKGEQHGAVCLETEFFPNAINDPTEGAAESVVLRPGQVYRHFTYH
VFQTIPRERE*

mRNA from alignment at scaffold_3:1064444..1066428+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_431 ID=mRNA_431|Name=jgi.p|Nanoce1779_2|577308|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp|location=Sequence derived from alignment at scaffold_3:1064444..1066428+ (Nannochloropsis oceanica)
CAACAGACCCCCAACGCCCGTCGCATATCATGTCTCAGTCTACCCCTCCC
TACGCCATTAAACGGATCTCAGCTGGGCTGTCTGGTCCCCCTGACACGGC
CGTGCATAGTTTTGAGGTGTCGAACGGCTCTCTCAGCATCTCGATGATGG
ACTACGGCGCGACACTCATCTCCGTTCGAGCCCCGGACCGGGACGGCAAA
TTAGACAATGTTACGCTTTTCTCAAATAAATTTGGAAAGAACGAAATGTA
CATGGGTGTAACGGTTGGGCGCGTGGCCAATCGGGTGGCAAACGGCATGT
TTAAGCTGGACGGCAAGGTACGTGGCTTGTATAGGAACGGGAAAAAGGTG
TGTGGGGAGGGCCGGGAGAAACGTTTCCTACACCGCAAAAGGTCATGGAG
CCTCACGGATGAAAACTCATGGTATTGCTCATAAGTCTCTCCGAAATTTT
GGTGCCTCGTACCTTGTCTCGTCGTTTTTAGCACATTTGGCCTCAACCAT
TTGTCCCTCCACCCTTGACCACAAACCTCTCCTTCTCTTAAATTATAGGA
CTACACACTGGCGACCAACAACGGGCCCAACAGCCTCCATGGCGGCATTC
AAGGCTTTGACAAACGAATGTGGGAAGGCAAGACATTTAAGAATGATAAG
GCTGTGGGCGTCATCTTCACGTTGCACAGCCCCGACGGCGACGAGGGCTA
TCCTGGCTTCGTGACGGTGCAGGTGCGCGGGTTGTGTGGTGCGCATTTCA
TTGAGTGTGGCGGTACGCGAGTGTTTGCTCATGCAGAGCTTATGTAGGAG
GGGAGGAGTCGGGATAAATGTAGCAGCTGGTATTTCTCGGTCAGACCTCT
TTTTCATTCTTCTTGATTGCTAATACCCATTCCCCTCCTTCTCAACATAA
TCAGGCAATCTACAGCATTCTGATCGACCAGGATGTCCTCGAGATGGATT
TTCGGGCAGAAACAGACGCGGCTACCCCCATAAACTTGAGTAACCACGCG
TACTGGAACCTCGGTGGGGAAGATGCAGGTGGTAAACACATCCGGAAGGT
ACAGTCGGACCCGCGCCCGCAATGACGGCATGGCTTTTGAAAGCGTATGG
GCACGCATGCGTGGTCTCACTTGTACAAGTGTCGGCCATTTTATTGCCGT
CTCTACTGCTCGTATCTCCTCGCCCGCTCTATCCACCCTCTTGTTCTTTC
CTCAACCAAGCTCTCCCTCCATCCCTCCTTTCCCTCCCCCCTCCCCCACA
GGCCCATGACCACTTCCTCCACGTAAACGCTACACACATCCTGGAAGTAG
GACCTAACCAGATCCCGACTGGCGTGCTACAGCCCGTTGAGGGGACGCCC
TTCGACCTCCGTGATGGCTCAGGATCCCAACTGGGGAATCGCATTCCTCT
GATTGATGGAGGGGGCAAGCCCGGATTCGATCATTGTTACGTGATTGAGG
ATTATGACCCCGCGGCGTCACGGAGAGTGACGTCAACGAAGGGAGGCAAG
AAGGAGAAAGGGGAAAACGTGGACAAGAGGAAACAAGCTGAAGCGCAGGG
GGAGATGATGGAGGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGATTCGGA
ATCAGGCTCGGTATATGGCTAGTCTTACGGAAAAGGAAAGTGGGAGGGTG
ATGCATGTGTATGGGACGCAGCCGGGCTTGCAGATATATACGGCAAATTG
GCTAAGTGAGGAGAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGAGACAG
AGTTTTTCCCGAATGCGATAAATGATCCTACGGAGGGGGCGGCGGAGAGC
GTGGTTTTGCGGCCTGGGCAGGTGTACCGGCATTTTACCTACCATGTGTT
TCAAACAATCCCGAGAGAACGAGAGTGATAGTGAGGACGGCACGAACGAG
GTGCTGGGATGTACAGTGTACAAGGGGGGGAAAAGGATGGAGCATAACAA
GCTACGGAAAGCGAAATTTGGTAGACAGATAGATG

Coding sequence (CDS) from alignment at scaffold_3:1064444..1066428+

>mRNA_431 ID=mRNA_431|Name=jgi.p|Nanoce1779_2|577308|organism=Nannochloropsis oceanica|type=CDS|length=4932bp|location=Sequence derived from alignment at scaffold_3:1064444..1066428+ (Nannochloropsis oceanica)
ATGTCTCAGTCTACCCCTCCCTACGCCATTAAACGGATCTCAGCTGGGCT
GTCTGGTCCCCCTGACACGGCCGTGCATAGTTTTGAGGTGTCGAACGGCT
CTCTCAGCATCTCGATGATGGACTACGGCGCGACACTCATCTCCGTTCGA
GCCCCGGACCGGGACGGCAAATTAGACAATGTTACGCTTTTCTCAAATAA
ATTTGGAAAGAACGAAATGTACATGGGTGTAACGGTTGGGCGCGTGGCCA
ATCGGGTGGCAAACGGCATGTTTAAGCTGGACGGCAAGGACTACACACTG
GCGACCAACAACGGGCCCAACAGCCTCCATGGCGGCATTCAAGGCTTTGA
CAAACGAATGTGGGAAGGCAAGACATTTAAGAATGATAAGGCTGTGGGCG
TCATCTTCACGTTGCACAGCCCCGACGGCGACGAGGGCTATCCTGGCTTC
GTGACGGTGCAGGCAATCTACAGCATTCTGATCGACCAGGATGTCCTCGA
GATGGATTTTCGGGCAGAAACAGACGCGGCTACCCCCATAAACTTGAGTA
ACCACGCGTACTGGAACCTCGGTGGGGAAGATGCAGGTGGTAAACACATC
CGGAAGGCCCATGACCACTTCCTCCACGTAAACGCTACACACATCCTGGA
AGTAGGACCTAACCAGATCCCGACTGGCGTGCTACAGCCCGTTGAGGGGA
CGCCCTTCGACCTCCGTGATGGCTCAGGATCCCAACTGGGGAATCGCATT
CCTCTGATTGATGGAGGGGGCAAGCCCGGATTCGATCATTGTTACGTGAT
TGAGGATTATGACCCCGCGGCGTCACGGAGAGTGACGTCAACGAAGGGAG
GCAAGAAGGAGAAAGGGGAAAACGTGGACAAGAGGAAACAAGCTGAAGCG
CAGGGGGAGATGATGGAGGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGAT
TCGGAATCAGGCTCGGTATATGGCTAGTCTTACGGAAAAGGAAAGTGGGA
GGGTGATGCATGTGTATGGGACGCAGCCGGGCTTGCAGATATATACGGCA
AATTGGCTAAGTGAGGAGAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGA
GACAGAGTTTTTCCCGAATGCGATAAATGATCCTACGGAGGGGGCGGCGG
AGAGCGTGGTTTTGCGGCCTGGGCAGGTGTACCGGCATTTTACCTACCAT
GTGTTTCAAACAATCCCGAGAGAACGAGAGTGAATGTCTCAGTCTACCCC
TCCCTACGCCATTAAACGGATCTCAGCTGGGCTGTCTGGTCCCCCTGACA
CGGCCGTGCATAGTTTTGAGGTGTCGAACGGCTCTCTCAGCATCTCGATG
ATGGACTACGGCGCGACACTCATCTCCGTTCGAGCCCCGGACCGGGACGG
CAAATTAGACAATGTTACGCTTTTCTCAAATAAATTTGGAAAGAACGAAA
TGTACATGGGTGTAACGGTTGGGCGCGTGGCCAATCGGGTGGCAAACGGC
ATGTTTAAGCTGGACGGCAAGGACTACACACTGGCGACCAACAACGGGCC
CAACAGCCTCCATGGCGGCATTCAAGGCTTTGACAAACGAATGTGGGAAG
GCAAGACATTTAAGAATGATAAGGCTGTGGGCGTCATCTTCACGTTGCAC
AGCCCCGACGGCGACGAGGGCTATCCTGGCTTCGTGACGGTGCAGGCAAT
CTACAGCATTCTGATCGACCAGGATGTCCTCGAGATGGATTTTCGGGCAG
AAACAGACGCGGCTACCCCCATAAACTTGAGTAACCACGCGTACTGGAAC
CTCGGTGGGGAAGATGCAGGTGGTAAACACATCCGGAAGGCCCATGACCA
CTTCCTCCACGTAAACGCTACACACATCCTGGAAGTAGGACCTAACCAGA
TCCCGACTGGCGTGCTACAGCCCGTTGAGGGGACGCCCTTCGACCTCCGT
GATGGCTCAGGATCCCAACTGGGGAATCGCATTCCTCTGATTGATGGAGG
GGGCAAGCCCGGATTCGATCATTGTTACGTGATTGAGGATTATGACCCCG
CGGCGTCACGGAGAGTGACGTCAACGAAGGGAGGCAAGAAGGAGAAAGGG
GAAAACGTGGACAAGAGGAAACAAGCTGAAGCGCAGGGGGAGATGATGGA
GGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGATTCGGAATCAGGCTCGGT
ATATGGCTAGTCTTACGGAAAAGGAAAGTGGGAGGGTGATGCATGTGTAT
GGGACGCAGCCGGGCTTGCAGATATATACGGCAAATTGGCTAAGTGAGGA
GAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGAGACAGAGTTTTTCCCGA
ATGCGATAAATGATCCTACGGAGGGGGCGGCGGAGAGCGTGGTTTTGCGG
CCTGGGCAGGTGTACCGGCATTTTACCTACCATGTGTTTCAAACAATCCC
GAGAGAACGAGAGTGAATGTCTCAGTCTACCCCTCCCTACGCCATTAAAC
GGATCTCAGCTGGGCTGTCTGGTCCCCCTGACACGGCCGTGCATAGTTTT
GAGGTGTCGAACGGCTCTCTCAGCATCTCGATGATGGACTACGGCGCGAC
ACTCATCTCCGTTCGAGCCCCGGACCGGGACGGCAAATTAGACAATGTTA
CGCTTTTCTCAAATAAATTTGGAAAGAACGAAATGTACATGGGTGTAACG
GTTGGGCGCGTGGCCAATCGGGTGGCAAACGGCATGTTTAAGCTGGACGG
CAAGGACTACACACTGGCGACCAACAACGGGCCCAACAGCCTCCATGGCG
GCATTCAAGGCTTTGACAAACGAATGTGGGAAGGCAAGACATTTAAGAAT
GATAAGGCTGTGGGCGTCATCTTCACGTTGCACAGCCCCGACGGCGACGA
GGGCTATCCTGGCTTCGTGACGGTGCAGGCAATCTACAGCATTCTGATCG
ACCAGGATGTCCTCGAGATGGATTTTCGGGCAGAAACAGACGCGGCTACC
CCCATAAACTTGAGTAACCACGCGTACTGGAACCTCGGTGGGGAAGATGC
AGGTGGTAAACACATCCGGAAGGCCCATGACCACTTCCTCCACGTAAACG
CTACACACATCCTGGAAGTAGGACCTAACCAGATCCCGACTGGCGTGCTA
CAGCCCGTTGAGGGGACGCCCTTCGACCTCCGTGATGGCTCAGGATCCCA
ACTGGGGAATCGCATTCCTCTGATTGATGGAGGGGGCAAGCCCGGATTCG
ATCATTGTTACGTGATTGAGGATTATGACCCCGCGGCGTCACGGAGAGTG
ACGTCAACGAAGGGAGGCAAGAAGGAGAAAGGGGAAAACGTGGACAAGAG
GAAACAAGCTGAAGCGCAGGGGGAGATGATGGAGGAGGAGGAGGAGAGGG
AGGAAGGGAAGTCGATTCGGAATCAGGCTCGGTATATGGCTAGTCTTACG
GAAAAGGAAAGTGGGAGGGTGATGCATGTGTATGGGACGCAGCCGGGCTT
GCAGATATATACGGCAAATTGGCTAAGTGAGGAGAAGGGAGAGCAGCACG
GGGCGGTTTGTCTTGAGACAGAGTTTTTCCCGAATGCGATAAATGATCCT
ACGGAGGGGGCGGCGGAGAGCGTGGTTTTGCGGCCTGGGCAGGTGTACCG
GCATTTTACCTACCATGTGTTTCAAACAATCCCGAGAGAACGAGAGTGAA
TGTCTCAGTCTACCCCTCCCTACGCCATTAAACGGATCTCAGCTGGGCTG
TCTGGTCCCCCTGACACGGCCGTGCATAGTTTTGAGGTGTCGAACGGCTC
TCTCAGCATCTCGATGATGGACTACGGCGCGACACTCATCTCCGTTCGAG
CCCCGGACCGGGACGGCAAATTAGACAATGTTACGCTTTTCTCAAATAAA
TTTGGAAAGAACGAAATGTACATGGGTGTAACGGTTGGGCGCGTGGCCAA
TCGGGTGGCAAACGGCATGTTTAAGCTGGACGGCAAGGACTACACACTGG
CGACCAACAACGGGCCCAACAGCCTCCATGGCGGCATTCAAGGCTTTGAC
AAACGAATGTGGGAAGGCAAGACATTTAAGAATGATAAGGCTGTGGGCGT
CATCTTCACGTTGCACAGCCCCGACGGCGACGAGGGCTATCCTGGCTTCG
TGACGGTGCAGGCAATCTACAGCATTCTGATCGACCAGGATGTCCTCGAG
ATGGATTTTCGGGCAGAAACAGACGCGGCTACCCCCATAAACTTGAGTAA
CCACGCGTACTGGAACCTCGGTGGGGAAGATGCAGGTGGTAAACACATCC
GGAAGGCCCATGACCACTTCCTCCACGTAAACGCTACACACATCCTGGAA
GTAGGACCTAACCAGATCCCGACTGGCGTGCTACAGCCCGTTGAGGGGAC
GCCCTTCGACCTCCGTGATGGCTCAGGATCCCAACTGGGGAATCGCATTC
CTCTGATTGATGGAGGGGGCAAGCCCGGATTCGATCATTGTTACGTGATT
GAGGATTATGACCCCGCGGCGTCACGGAGAGTGACGTCAACGAAGGGAGG
CAAGAAGGAGAAAGGGGAAAACGTGGACAAGAGGAAACAAGCTGAAGCGC
AGGGGGAGATGATGGAGGAGGAGGAGGAGAGGGAGGAAGGGAAGTCGATT
CGGAATCAGGCTCGGTATATGGCTAGTCTTACGGAAAAGGAAAGTGGGAG
GGTGATGCATGTGTATGGGACGCAGCCGGGCTTGCAGATATATACGGCAA
ATTGGCTAAGTGAGGAGAAGGGAGAGCAGCACGGGGCGGTTTGTCTTGAG
ACAGAGTTTTTCCCGAATGCGATAAATGATCCTACGGAGGGGGCGGCGGA
GAGCGTGGTTTTGCGGCCTGGGCAGGTGTACCGGCATTTTACCTACCATG
TGTTTCAAACAATCCCGAGAGAACGAGAGTGA

Synonyms

Publications