jgi.p|Nanoce1779_2|588693, mRNA_4307 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588693
Unique NamemRNA_4307
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1193
Alignment locationscaffold_10:258060..259252 +

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Properties
Property NameValue
TranscriptId588779
TrackFilteredModels2
ProteinId588693
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:258060..259252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588693gene_4307Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588693mRNA_4307-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4307CDS_4307Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4307 ID=mRNA_4307|Name=jgi.p|Nanoce1779_2|588693|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
CAGGCCCTCCATCGCTGCAAGCATCATCAGCAGCTGTGCAAGCAGCAGAA
TGAGTCGCACAGGCAGCAGTTTGGTGCGGCGCCTGGGAGTTTCTCTGACC
AGCACCCCGTCCTCCACCGTTACCGCCAGCAACAGACGCGCTATCACTAT
TGTCACTGCCGCCCGACGGCCGCCCCATCAATCACAGGCGTCGCCACCAC
CACCATCCGCCAACCCCCTCCTCTCGACGCGCTGCCTCATCACCGGCAGC
AGCCGCAGCGGCAGCAGTGCCGCGGACAGCAACGAAGGCGCCTCCAAGAA
GTATGTTTCTCCGCACAATTGGATGGCGTTGGTGCGGGACTACGGCAAGT
CGGATGCGGTGGTTGGCGATGCACCCATGGAGATCCAGACTATCCAAGCT
ACGGCCCGCACACCCCAGGAGACGGGTTCCCGCTACAGCCAACGGGCACG
GGAAAAAGGCCATCTGCCCGGTGTCCTCTACGGACCTGGAGTGGACGGGG
ACAAAGAGCGCCACCTCATTACGGTGGAACGTCGGGAGATTGAAAAACAG
ATGCGGCGGTTGGGGGATTCTATCGCGAGTACGGTATTTGATTTGCAGTT
GGGGCAGTACAAGCAACGGGTTCTCATCCGAGACTTAGACCGGGACCCCG
GGACGGCATTGCCGATTGCTGTAAATTTTTTGCGGTATCGCCCGGGATAC
CCCGTCGAGGTGCCTGTGTGTTTTGTGAATGAAGATTTGTGCTTGCCTTT
AAAACGGGGGGGCATGCTCCTGAGCATTAATCGTTTTATCCGCGTATCGT
GCGAGGGCGAGACTTTGCCGGAAATGTTGATGGTGGATATGACGGGGGTG
AGGAACAATCAGAAGGTTGGATTAGAGCGTGTGCACTTCCCGTCGAACGT
GCAACCGTACGAGGTGAGCGAGAGTTTTGTCTTGGGGGTGGTGAAGGGCA
AAAACGTGGCGGGCACGCCTGGCGGGCCTGACTCGGTGGCGGATGAGGTG
GCAGCAACAGCGTAGAGGGTTTGAGACCATTAAGAGAGAATGAGAAAGAA
AGGAAGCAAAAGTGAGTGAACGGGATGTGGGGAGAGTAAATCTTCGCTAA
AGAAGTAAAAAAAAAACAAAAAAAAACATAGTCAAAAAGTTACAACTCTG
TGCTGTGGCACCAGACATACAAAACAACAGCGGTTTAATGATA
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protein sequence of jgi.p|Nanoce1779_2|588693

>mRNA_4307-protein ID=mRNA_4307-protein|Name=jgi.p|Nanoce1779_2|588693|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSRTGSSLVRRLGVSLTSTPSSTVTASNRRAITIVTAARRPPHQSQASPP
PPSANPLLSTRCLITGSSRSGSSAADSNEGASKKYVSPHNWMALVRDYGK
SDAVVGDAPMEIQTIQATARTPQETGSRYSQRAREKGHLPGVLYGPGVDG
DKERHLITVERREIEKQMRRLGDSIASTVFDLQLGQYKQRVLIRDLDRDP
GTALPIAVNFLRYRPGYPVEVPVCFVNEDLCLPLKRGGMLLSINRFIRVS
CEGETLPEMLMVDMTGVRNNQKVGLERVHFPSNVQPYEVSESFVLGVVKG
KNVAGTPGGPDSVADEVAATA*
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mRNA from alignment at scaffold_10:258060..259252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4307 ID=mRNA_4307|Name=jgi.p|Nanoce1779_2|588693|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp|location=Sequence derived from alignment at scaffold_10:258060..259252+ (Nannochloropsis oceanica)
CAGGCCCTCCATCGCTGCAAGCATCATCAGCAGCTGTGCAAGCAGCAGAA
TGAGTCGCACAGGCAGCAGTTTGGTGCGGCGCCTGGGAGTTTCTCTGACC
AGCACCCCGTCCTCCACCGTTACCGCCAGCAACAGACGCGCTATCACTAT
TGTCACTGCCGCCCGACGGCCGCCCCATCAATCACAGGCGTCGCCACCAC
CACCATCCGCCAACCCCCTCCTCTCGACGCGCTGCCTCATCACCGGCAGC
AGCCGCAGCGGCAGCAGTGCCGCGGACAGCAACGAAGGCGCCTCCAAGAA
GTATGTTTCTCCGCACAATTGGATGGCGTTGGTGCGGGACTACGGCAAGT
CGGATGCGGTGGTTGGCGATGCACCCATGGAGATCCAGACTATCCAAGCT
ACGGCCCGCACACCCCAGGAGACGGGTTCCCGCTACAGCCAACGGGCACG
GGAAAAAGGCCATCTGCCCGGTGTCCTCTACGGACCTGGAGTGGACGGGG
ACAAAGAGCGCCACCTCATTACGGTGGAACGTCGGGAGATTGAAAAACAG
ATGCGGCGGTTGGGGGATTCTATCGCGAGTACGGTATTTGATTTGCAGTT
GGGGCAGTACAAGCAACGGGTTCTCATCCGAGACTTAGACCGGGACCCCG
GGACGGCATTGCCGATTGCTGTAAATTTTTTGCGGTATCGCCCGGGATAC
CCCGTCGAGGTGCCTGTGTGTTTTGTGAATGAAGATTTGTGCTTGCCTTT
AAAACGGGGGGGCATGCTCCTGAGCATTAATCGTTTTATCCGCGTATCGT
GCGAGGGCGAGACTTTGCCGGAAATGTTGATGGTGGATATGACGGGGGTG
AGGAACAATCAGAAGGTTGGATTAGAGCGTGTGCACTTCCCGTCGAACGT
GCAACCGTACGAGGTGAGCGAGAGTTTTGTCTTGGGGGTGGTGAAGGGCA
AAAACGTGGCGGGCACGCCTGGCGGGCCTGACTCGGTGGCGGATGAGGTG
GCAGCAACAGCGTAGAGGGTTTGAGACCATTAAGAGAGAATGAGAAAGAA
AGGAAGCAAAAGTGAGTGAACGGGATGTGGGGAGAGTAAATCTTCGCTAA
AGAAGTAAAAAAAAAACAAAAAAAAACATAGTCAAAAAGTTACAACTCTG
TGCTGTGGCACCAGACATACAAAACAACAGCGGTTTAATGATA
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Coding sequence (CDS) from alignment at scaffold_10:258060..259252+

>mRNA_4307 ID=mRNA_4307|Name=jgi.p|Nanoce1779_2|588693|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_10:258060..259252+ (Nannochloropsis oceanica)
ATGAGTCGCACAGGCAGCAGTTTGGTGCGGCGCCTGGGAGTTTCTCTGAC
CAGCACCCCGTCCTCCACCGTTACCGCCAGCAACAGACGCGCTATCACTA
TTGTCACTGCCGCCCGACGGCCGCCCCATCAATCACAGGCGTCGCCACCA
CCACCATCCGCCAACCCCCTCCTCTCGACGCGCTGCCTCATCACCGGCAG
CAGCCGCAGCGGCAGCAGTGCCGCGGACAGCAACGAAGGCGCCTCCAAGA
AGTATGTTTCTCCGCACAATTGGATGGCGTTGGTGCGGGACTACGGCAAG
TCGGATGCGGTGGTTGGCGATGCACCCATGGAGATCCAGACTATCCAAGC
TACGGCCCGCACACCCCAGGAGACGGGTTCCCGCTACAGCCAACGGGCAC
GGGAAAAAGGCCATCTGCCCGGTGTCCTCTACGGACCTGGAGTGGACGGG
GACAAAGAGCGCCACCTCATTACGGTGGAACGTCGGGAGATTGAAAAACA
GATGCGGCGGTTGGGGGATTCTATCGCGAGTACGGTATTTGATTTGCAGT
TGGGGCAGTACAAGCAACGGGTTCTCATCCGAGACTTAGACCGGGACCCC
GGGACGGCATTGCCGATTGCTGTAAATTTTTTGCGGTATCGCCCGGGATA
CCCCGTCGAGGTGCCTGTGTGTTTTGTGAATGAAGATTTGTGCTTGCCTT
TAAAACGGGGGGGCATGCTCCTGAGCATTAATCGTTTTATCCGCGTATCG
TGCGAGGGCGAGACTTTGCCGGAAATGTTGATGGTGGATATGACGGGGGT
GAGGAACAATCAGAAGGTTGGATTAGAGCGTGTGCACTTCCCGTCGAACG
TGCAACCGTACGAGGTGAGCGAGAGTTTTGTCTTGGGGGTGGTGAAGGGC
AAAAACGTGGCGGGCACGCCTGGCGGGCCTGACTCGGTGGCGGATGAGGT
GGCAGCAACAGCGTAG
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Synonyms
Publications