jgi.p|Nanoce1779_2|588686, mRNA_4304 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588686
Unique NamemRNA_4304
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1975
Alignment locationscaffold_10:249798..251772 -

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Properties
Property NameValue
TranscriptId588772
TrackFilteredModels2
ProteinId588686
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:249798..251772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588686gene_4304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588686mRNA_4304-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4304CDS_4304Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4304 ID=mRNA_4304|Name=jgi.p|Nanoce1779_2|588686|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp
ACAGGACAAATCTATGGTCAGGAGGAAGACGGACACGGACAGCTCGGCGG
CCGACGACGCGGCTACAGCTACAAGCAACGGCGTCAACGTCCCATCGTCC
GCCTCCTCTTCAGCCTCTGCTTCTTCCTCCTCCAAAGGCACTCTACCCGC
ACGTGTACAGGCTCTGCAAGCGAAAGCCACCACATTGCCTCAGCCTTTAT
CTAACGTGGCAAAATGCGCCTTGTACTACGAAGCGGAAATGCTCTGGCAA
ATGATCAAAGATGAGCTGCCCGCCGAGCACCCGGACCAGGCCTCCTTACT
AGCCGCAATCGACCAGTTCGAGACGAAGCTCCTGCACATCAGCCCCGCTC
AGCTCGCCACCACCTCTTTTCAACGGATCCTGCAGCGTCTCGACATGCTT
TTACGAGTAATTACTTGCTCCCTCTACCTCTGCCTTCTAGGGGTAATCAC
ATTTTTGCCCATGATCACTCTCGTTCCCGTCCTTGACCGCCTCCTCTTAA
TCCTGGGCTGGCCACGTCGTTACCTCATCTACGAATTCGCCAAAAAGGCA
TCTGCGCGTGGATTTCTCTACTTAGCCGGTGTTTTTTACACTGAAGAAGG
GAAGCAACACAATGGATATGAAACCCCCCTTGTCCTCCTTTTTCAACACG
GCTCGAACCTCGATGGCTTCTTGATCTTGGACTCCTTCCCGCAATTTTTC
AAATCCATCGGAAAAGACGACATCTTTCTCATGCCTTATGTAGGGTGGAT
GGCATATGTATACGGCATTCTACCTATCGACCGGAAGCATCGCAACGAAG
CAATTAAACAGCTAGGAAGAGCTACTCGCGTCTGTGCGTCTGGTGTGGCC
ATCGCTCTTTCCCCTGAGGGCACACGTAGCAAGACCGGACAATTGATGCG
ATTCAAAAAGGGGCCGTTTTACTTACAAGCCGAGACATCTGCCACTATTA
CGCCTCTAGTCATCATTGGAAATTACGAATTGTGGCCTCCCAACTATTTC
TTCACTTGCCCTGGGCAGGTGGTGATGCGGTACCTTCCTCCCATCGACCC
TTCCTCCCTTCCTCCCTCGATTGGTCGGAATAAGGACGAGCTCAGTCGGT
ATGTGCGCAAACAGATGTTTGAGGCGATCCATGACATCATGGCGGGCTCC
GGGGAGGGAGGGGAGGAGGGAGGGAAGAAGATAAAAAAGTATGCGCCGGG
GGGGAAGTTGACGTGGTGGTTGCGGGGACTGAACTTGACGTGCATGTGCC
TCTTTTGGTTGATGGTGAAGGCGGCATGGGTGATGGTAACGGGGGCAAGT
GACGCGTATGGCTTCAGTAGGGGGGCGTTGGCCGGGGGATTCGTCGCATA
CACGGTGAGTGTGACTGCTGGCCTGTATATTCTGTACTGTAGGGCGCCGG
CGTCGTGAGAGGGAGAGAGGAAGGGAGGGGAGAAGGGAGAAATAGAAGTC
CCGGTAGAGGGTAGAGCTAAGTGTGTGAGTGTGTGAGAGCGCGAGTGTTC
TCCTGAAAAAAAGAGATGTTTTTGTTGGAGAAGACTCGCCTTTTCAGAAG
GGAGAGAATCTTGTGGGGATGGGTAAATGTGGGGGAAAGTGGAGGGCGAG
ATCTGAGATGGATCATGAAAGAGAGAGAGAGAATGGTTGACATTTTCATT
GCTTCCATTGGATTGGTTGCCACAGCTTCGAGTTACAGAGAGCTAAGGCG
CTCGCATGCTCCTCTTTACACTTGATATCTACTTCGTGTTCTTTGTAATA
TCCATGCGGTCAGCAGCCGCAATTGCTGCTACTGCATCTGTTACTGCCGC
AGCCGAAAGCTTTTTTTAAATATTTTCTTCGTTGCTTATTTCTCTAACTT
TGTCTTTCCACTTGCCTTTCATTCCCCCCTCTCTTCTTCCTTCCCTCCAT
TCTGGCACTCCTGCTCCCATCTGATTTATTCCACCCCCCCCAACCCCGCA
TCCCCACCCTCCGTCCCTCCCTTCT
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protein sequence of jgi.p|Nanoce1779_2|588686

>mRNA_4304-protein ID=mRNA_4304-protein|Name=jgi.p|Nanoce1779_2|588686|organism=Nannochloropsis oceanica|type=polypeptide|length=465bp
MVRRKTDTDSSAADDAATATSNGVNVPSSASSSASASSSSKGTLPARVQA
LQAKATTLPQPLSNVAKCALYYEAEMLWQMIKDELPAEHPDQASLLAAID
QFETKLLHISPAQLATTSFQRILQRLDMLLRVITCSLYLCLLGVITFLPM
ITLVPVLDRLLLILGWPRRYLIYEFAKKASARGFLYLAGVFYTEEGKQHN
GYETPLVLLFQHGSNLDGFLILDSFPQFFKSIGKDDIFLMPYVGWMAYVY
GILPIDRKHRNEAIKQLGRATRVCASGVAIALSPEGTRSKTGQLMRFKKG
PFYLQAETSATITPLVIIGNYELWPPNYFFTCPGQVVMRYLPPIDPSSLP
PSIGRNKDELSRYVRKQMFEAIHDIMAGSGEGGEEGGKKIKKYAPGGKLT
WWLRGLNLTCMCLFWLMVKAAWVMVTGASDAYGFSRGALAGGFVAYTVSV
TAGLYILYCRAPAS*
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mRNA from alignment at scaffold_10:249798..251772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4304 ID=mRNA_4304|Name=jgi.p|Nanoce1779_2|588686|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp|location=Sequence derived from alignment at scaffold_10:249798..251772- (Nannochloropsis oceanica)
ACAGGACAAATCTATGGTCAGGAGGAAGACGGACACGGACAGCTCGGCGG
CCGACGACGCGGCTACAGCTACAAGCAACGGCGTCAACGTCCCATCGTCC
GCCTCCTCTTCAGCCTCTGCTTCTTCCTCCTCCAAAGGCACTCTACCCGC
ACGTGTACAGGCTCTGCAAGCGAAAGCCACCACATTGCCTCAGCCTTTAT
CTAACGTGGCAAAATGCGCCTTGTACTACGAAGCGGAAATGCTCTGGCAA
ATGATCAAAGATGAGCTGCCCGCCGAGCACCCGGACCAGGCCTCCTTACT
AGCCGCAATCGACCAGTTCGAGACGAAGCTCCTGCACATCAGCCCCGCTC
AGCTCGCCACCACCTCTTTTCAACGGATCCTGCAGCGTCTCGACATGCTT
TTACGAGTAATTACTTGCTCCCTCTACCTCTGCCTTCTAGGGGTAATCAC
ATTTTTGCCCATGATCACTCTCGTTCCCGTCCTTGACCGCCTCCTCTTAA
TCCTGGGCTGGCCACGTCGTTACCTCATCTACGAATTCGCCAAAAAGGCA
TCTGCGCGTGGATTTCTCTACTTAGCCGGTGTTTTTTACACTGAAGAAGG
GAAGCAACACAATGGATATGAAACCCCCCTTGTCCTCCTTTTTCAACACG
GCTCGAACCTCGATGGCTTCTTGATCTTGGACTCCTTCCCGCAATTTTTC
AAATCCATCGGAAAAGACGACATCTTTCTCATGCCTTATGTAGGGTGGAT
GGCATATGTATACGGCATTCTACCTATCGACCGGAAGCATCGCAACGAAG
CAATTAAACAGCTAGGAAGAGCTACTCGCGTCTGTGCGTCTGGTGTGGCC
ATCGCTCTTTCCCCTGAGGGCACACGTAGCAAGACCGGACAATTGATGCG
ATTCAAAAAGGGGCCGTTTTACTTACAAGCCGAGACATCTGCCACTATTA
CGCCTCTAGTCATCATTGGAAATTACGAATTGTGGCCTCCCAACTATTTC
TTCACTTGCCCTGGGCAGGTGGTGATGCGGTACCTTCCTCCCATCGACCC
TTCCTCCCTTCCTCCCTCGATTGGTCGGAATAAGGACGAGCTCAGTCGGT
ATGTGCGCAAACAGATGTTTGAGGCGATCCATGACATCATGGCGGGCTCC
GGGGAGGGAGGGGAGGAGGGAGGGAAGAAGATAAAAAAGTATGCGCCGGG
GGGGAAGTTGACGTGGTGGTTGCGGGGACTGAACTTGACGTGCATGTGCC
TCTTTTGGTTGATGGTGAAGGCGGCATGGGTGATGGTAACGGGGGCAAGT
GACGCGTATGGCTTCAGTAGGGGGGCGTTGGCCGGGGGATTCGTCGCATA
CACGGTGAGTGTGACTGCTGGCCTGTATATTCTGTACTGTAGGGCGCCGG
CGTCGTGAGAGGGAGAGAGGAAGGGAGGGGAGAAGGGAGAAATAGAAGTC
CCGGTAGAGGGTAGAGCTAAGTGTGTGAGTGTGTGAGAGCGCGAGTGTTC
TCCTGAAAAAAAGAGATGTTTTTGTTGGAGAAGACTCGCCTTTTCAGAAG
GGAGAGAATCTTGTGGGGATGGGTAAATGTGGGGGAAAGTGGAGGGCGAG
ATCTGAGATGGATCATGAAAGAGAGAGAGAGAATGGTTGACATTTTCATT
GCTTCCATTGGATTGGTTGCCACAGCTTCGAGTTACAGAGAGCTAAGGCG
CTCGCATGCTCCTCTTTACACTTGATATCTACTTCGTGTTCTTTGTAATA
TCCATGCGGTCAGCAGCCGCAATTGCTGCTACTGCATCTGTTACTGCCGC
AGCCGAAAGCTTTTTTTAAATATTTTCTTCGTTGCTTATTTCTCTAACTT
TGTCTTTCCACTTGCCTTTCATTCCCCCCTCTCTTCTTCCTTCCCTCCAT
TCTGGCACTCCTGCTCCCATCTGATTTATTCCACCCCCCCCAACCCCGCA
TCCCCACCCTCCGTCCCTCCCTTCT
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Coding sequence (CDS) from alignment at scaffold_10:249798..251772-

>mRNA_4304 ID=mRNA_4304|Name=jgi.p|Nanoce1779_2|588686|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_10:249798..251772- (Nannochloropsis oceanica)
ATGGTCAGGAGGAAGACGGACACGGACAGCTCGGCGGCCGACGACGCGGC
TACAGCTACAAGCAACGGCGTCAACGTCCCATCGTCCGCCTCCTCTTCAG
CCTCTGCTTCTTCCTCCTCCAAAGGCACTCTACCCGCACGTGTACAGGCT
CTGCAAGCGAAAGCCACCACATTGCCTCAGCCTTTATCTAACGTGGCAAA
ATGCGCCTTGTACTACGAAGCGGAAATGCTCTGGCAAATGATCAAAGATG
AGCTGCCCGCCGAGCACCCGGACCAGGCCTCCTTACTAGCCGCAATCGAC
CAGTTCGAGACGAAGCTCCTGCACATCAGCCCCGCTCAGCTCGCCACCAC
CTCTTTTCAACGGATCCTGCAGCGTCTCGACATGCTTTTACGAGTAATTA
CTTGCTCCCTCTACCTCTGCCTTCTAGGGGTAATCACATTTTTGCCCATG
ATCACTCTCGTTCCCGTCCTTGACCGCCTCCTCTTAATCCTGGGCTGGCC
ACGTCGTTACCTCATCTACGAATTCGCCAAAAAGGCATCTGCGCGTGGAT
TTCTCTACTTAGCCGGTGTTTTTTACACTGAAGAAGGGAAGCAACACAAT
GGATATGAAACCCCCCTTGTCCTCCTTTTTCAACACGGCTCGAACCTCGA
TGGCTTCTTGATCTTGGACTCCTTCCCGCAATTTTTCAAATCCATCGGAA
AAGACGACATCTTTCTCATGCCTTATGTAGGGTGGATGGCATATGTATAC
GGCATTCTACCTATCGACCGGAAGCATCGCAACGAAGCAATTAAACAGCT
AGGAAGAGCTACTCGCGTCTGTGCGTCTGGTGTGGCCATCGCTCTTTCCC
CTGAGGGCACACGTAGCAAGACCGGACAATTGATGCGATTCAAAAAGGGG
CCGTTTTACTTACAAGCCGAGACATCTGCCACTATTACGCCTCTAGTCAT
CATTGGAAATTACGAATTGTGGCCTCCCAACTATTTCTTCACTTGCCCTG
GGCAGGTGGTGATGCGGTACCTTCCTCCCATCGACCCTTCCTCCCTTCCT
CCCTCGATTGGTCGGAATAAGGACGAGCTCAGTCGGTATGTGCGCAAACA
GATGTTTGAGGCGATCCATGACATCATGGCGGGCTCCGGGGAGGGAGGGG
AGGAGGGAGGGAAGAAGATAAAAAAGTATGCGCCGGGGGGGAAGTTGACG
TGGTGGTTGCGGGGACTGAACTTGACGTGCATGTGCCTCTTTTGGTTGAT
GGTGAAGGCGGCATGGGTGATGGTAACGGGGGCAAGTGACGCGTATGGCT
TCAGTAGGGGGGCGTTGGCCGGGGGATTCGTCGCATACACGGTGAGTGTG
ACTGCTGGCCTGTATATTCTGTACTGTAGGGCGCCGGCGTCGTGA
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Synonyms
Publications