jgi.p|Nanoce1779_2|20572, mRNA_4303 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|20572
Unique Name	mRNA_4303
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1246
Alignment location	scaffold_10:247116..249161 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	20658
Track	FilteredModels2
ProteinId	20572

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:247116..249161 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|20572	gene_4303	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|20572	mRNA_4303-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4303	CDS_4303	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:247116..249161+
coding sequence from alignment at scaffold_10:247116..249161+

mRNA sequence

>mRNA_4303 ID=mRNA_4303|Name=jgi.p|Nanoce1779_2|20572|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp
CCGAGAAAGTGCGTTTCTTGCTTGGGGTTACATGCTTCAGCGAGGCAGCC
AAGAAGATGGATGAGGGATGGACAGGCTTGCCGGTCTTGTATGCTTCTGG
TCTCCACCCCTTGACTGTCTCTCAGACAGAATACAGCTCCGCGCCTCTAT
CTGCTCGCGTGAAATTGAGCATTGCATTAGTTCAATGCCTGTTATGCGAG
GGTCCGGGATGCCGAGGCGAGAGCAAGCAATTGCCCTGAACGCAGTTATT
CATTGACCCTCACATTCCTCCTCCACTCTACCCATGCACAAGCAGACAAG
AAAAGGCTACTATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCC
GAGCCACCAGTGCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGA
GACCAAAGCGCTAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAG
AGGGTGATGCGACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACC
TCTACCACCACTGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTC
TGATGTCAAGGAGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGG
ATAAGGCAGGAGAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAA
ACCAGTACAGCGCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGA
AGAAGATCCGGAAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGC
TCCAGGAGGCCAAGGAGAAGGCGCAGAAGCGCTTGAACGAGCAATTTCCC
GCCTCTCGCTCCAGCAAATCGTCCCCTCCGTCCTCCACCACTTCTTCTCC
CTCGGCCGCCGCTGCCGCCACTTCCACTGCCTACTACGCCGCGGCCGTTA
ATGCCGCAACCGGTACCGCTGGTGACCCCCCCCTTCCCTCTCTCCCTCAT
ACCTCCTCGTCGAAACAACAATCCCCGGTGGACGATGCGTGTCGTGTGTA
TGTGGGGAGTTTGCATTATGATTTGAAGGAGGAGGACGTTAGGAAGGTGT
TTGCTCCTTTTGGGGCGATTCGGAACATCAATATGTCGTTCGAGCCAGCG
ACAGGAAAGAGTAAGGGCTTTGCATTTGTGGATTTTGAGCAAGGGGAGAG
TGCAACCATGGCACTGCAGACGATGAACGGTTTTCAGTTGGCGGGCCGGC
CGCTGAAGGTCGGGAGGCCTGCGCCGGGGGGGGGCGGGGGGGGGGG

protein sequence of jgi.p|Nanoce1779_2|20572

>mRNA_4303-protein ID=mRNA_4303-protein|Name=jgi.p|Nanoce1779_2|20572|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MPRAKPTKKAVKAEPPVPPAPVAEEEEEEETKALEGPAPEAPVEEEEGDA
TNSGSTVPENHTTSTTTGNNKKKAEVIEGSDVKEEPTNKRQKRQPQDKAG
EEAVEAEAAVKAETSTAPPTSAGEKGQEAEEDPEILLKSIIEKQLELQEA
KEKAQKRLNEQFPASRSSKSSPPSSTTSSPSAAAAATSTAYYAAAVNAAT
GTAGDPPLPSLPHTSSSKQQSPVDDACRVYVGSLHYDLKEEDVRKVFAPF
GAIRNINMSFEPATGKSKGFAFVDFEQGESATMALQTMNGFQLAGRPLKV
GRPAPGGGGGG

mRNA from alignment at scaffold_10:247116..249161+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4303 ID=mRNA_4303|Name=jgi.p|Nanoce1779_2|20572|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at scaffold_10:247116..249161+ (Nannochloropsis oceanica)
CCGAGAAAGTGCGTTTCTTGCTTGGGGTTACATGCTTCAGCGAGGCAGCC
AAGAAGATGGATGAGGGATGGACAGGCTTGCCGGTCTTGTATGCTTCTGG
TCTCCACCCCTTGACTGTCTCTCAGACAGAATACAGCTCCGCGCCTCTAT
CTGCTCGCGTGAAATTGAGCATTGCATTAGTTCAATGCCTGTTATGCGAG
GGTCCGGGATGCCGAGGCGAGAGCAAGCAATTGCCCTGAACGCAGTTATT
CATTGACCCTCACATTCCTCCTCCACTCTACCCATGCACAAGCAGACAAG
AAAAGGCTACTATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCC
GAGCCACCAGTGCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGA
GACCAAAGCGCTAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAG
AGGGTGATGCGACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACC
TCTACCACCACTGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTC
TGATGTCAAGGAGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGG
ATAAGGCAGGAGAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAA
ACCAGTACAGCGCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGA
AGAAGATCCGGAAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGC
TCCAGGAGGCCAAGGAGAAGGCGCAGAAGCGCTTGAACGAGGTATGTGGT
AGGGGTGTGTGTGGAGGGGTTTGAGATTGCACTTGTCTGTCACTACCGGT
TCGGGGAGGGGGGGAGTGTCTATGATGCTTGTCTGGATCGACCTCCCATT
GCATTTCTTTCATGTTTTTAAGAATGTTTTGGAGTTTTGCTATCCTTTTG
CCTTGTTGGGGGCATGTTTCCTACATTGCCTCTCTCGGTCCGTCTACCTT
CTCTCCTCTCTTCAGTCGAGTCTTGTGCCTCTCCGCTCTGCTGCTGCCGT
CTTCATTTCCTTCTTCTCCCGTCCCCCTTTCCTGCTTTCTGCCTGTCCTT
TGGGAGCTTTTGGGGCATGCGGCTTTCCTCACCATGAAGCCTCGTCGTTG
TCGTATCGATGTTGGCAGGCGATGTTTAATATTATTGGGCTGCTCAGCAG
GACAACAATGACCAGCCTCACGGCACAACTATATCCACGAACAGCAGTAG
TCGCACCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCCAGAGTGTGAGGACTTGTTAAGAAAAGCGACGATGGGGAAGA
CGTCGAGCCCATCCAACTTTGCATGGCAGCAGGAGGAGGAAGAGAGGTCC
CGTGCACTGCAGACACTCTAGGAATCAGCACTTCACCCCATTGCGACACT
GACTGCTGCGAATTAACACGACAACGACGAGAATAGTCAAGGACACGGGC
CGTCGTTCGCCTTAGCTGTCTCTCGTCTCCCTCTCACCCACCCCTATTCT
CTCTTCCCCCCACCCTTTTTTCCACTTGTCCCAATCCACAGCAATTTCCC
GCCTCTCGCTCCAGCAAATCGTCCCCTCCGTCCTCCACCACTTCTTCTCC
CTCGGCCGCCGCTGCCGCCACTTCCACTGCCTACTACGCCGCGGCCGTTA
ATGCCGCAACCGGTACCGCTGGTGACCCCCCCCTTCCCTCTCTCCCTCAT
ACCTCCTCGTCGAAACAACAATCCCCGGTGGACGATGCGTGTCGTGTGTA
TGTGGGGAGTTTGCATTATGATTTGAAGGAGGAGGACGTTAGGAAGGTGT
TTGCTCCTTTTGGGGCGATTCGGAACATCAATATGTCGTTCGAGCCAGCG
ACAGGAAAGAGTAAGGGCTTTGCATTTGTGGATTTTGAGCAAGGGGAGAG
TGCAACCATGGCACTGCAGACGATGAACGGTTTTCAGTTGGCGGGCCGGC
CGCTGAAGGTCGGGAGGCCTGCGCCGGGGGGGGGCGGGGGGGGGGG

Coding sequence (CDS) from alignment at scaffold_10:247116..249161+

>mRNA_4303 ID=mRNA_4303|Name=jgi.p|Nanoce1779_2|20572|organism=Nannochloropsis oceanica|type=CDS|length=1870bp|location=Sequence derived from alignment at scaffold_10:247116..249161+ (Nannochloropsis oceanica)
ATGCCGCGCGCGAAACCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGT
GCCCCCGGCTCCAGTAGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGC
TAGAAGGACCAGCCCCCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCG
ACCAACAGCGGCAGCACCGTTCCCGAGAACCACACAACCTCTACCACCAC
TGGCAATAACAAGAAGAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGG
AGGAACCTACGAACAAGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGA
GAAGAAGCAGTCGAAGCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGC
GCCGCCTACCTCTGCTGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGG
AAATATTATTGAAGTCCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCC
AAGGAGAAGGCGCAGAAGCGCTTGAACGAGCAATTTCCCGCCTCTCGCTC
CAGCAAATCGTCCCCTCCGTCCTCCACCACTTCTTCTCCCTCGGCCGCCG
CTGCCGCCACTTCCACTGCCTACTACGCCGCGGCCGTTAATGCCGCAACC
GGTACCGCTGGTGACCCCCCCCTTCCCTCTCTCCCTCATACCTCCTCGTC
GAAACAACAATCCCCGGTGGACGATGCGTGTCGTGTGTATGTGGGGAGTT
TGCATTATGATTTGAAGGAGGAGGACGTTAGGAAGGTGTTTGCTCCTTTT
GGGGCGATTCGGAACATCAATATGTCGTTCGAGCCAGCGACAGGAAAGAG
TAAGGGCTTTGCATTTGTGGATTTTGAGCAAGGGGAGAGTGCAACCATGG
CACTGCAGACGATGAACGGTTTTCAGTTGGCGGGCCGGCCGCTGAAGGTC
GGGAGGCCTGCGCCGGGGGGGGGCGGGGGGGGGGGATGCCGCGCGCGAAA
CCAACTAAGAAGGCAGTGAAAGCCGAGCCACCAGTGCCCCCGGCTCCAGT
AGCAGAGGAAGAAGAGGAAGAAGAGACCAAAGCGCTAGAAGGACCAGCCC
CCGAAGCGCCGGTCGAAGAGGAAGAGGGTGATGCGACCAACAGCGGCAGC
ACCGTTCCCGAGAACCACACAACCTCTACCACCACTGGCAATAACAAGAA
GAAAGCAGAGGTCATTGAAGGCTCTGATGTCAAGGAGGAACCTACGAACA
AGCGTCAAAAGCGCCAGCCGCAGGATAAGGCAGGAGAAGAAGCAGTCGAA
GCAGAGGCTGCAGTCAAAGCGGAAACCAGTACAGCGCCGCCTACCTCTGC
TGGTGAGAAAGGGCAAGAGGCGGAAGAAGATCCGGAAATATTATTGAAGT
CCATCATTGAGAAGCAGTTGGAGCTCCAGGAGGCCAAGGAGAAGGCGCAG
AAGCGCTTGAACGAGCAATTTCCCGCCTCTCGCTCCAGCAAATCGTCCCC
TCCGTCCTCCACCACTTCTTCTCCCTCGGCCGCCGCTGCCGCCACTTCCA
CTGCCTACTACGCCGCGGCCGTTAATGCCGCAACCGGTACCGCTGGTGAC
CCCCCCCTTCCCTCTCTCCCTCATACCTCCTCGTCGAAACAACAATCCCC
GGTGGACGATGCGTGTCGTGTGTATGTGGGGAGTTTGCATTATGATTTGA
AGGAGGAGGACGTTAGGAAGGTGTTTGCTCCTTTTGGGGCGATTCGGAAC
ATCAATATGTCGTTCGAGCCAGCGACAGGAAAGAGTAAGGGCTTTGCATT
TGTGGATTTTGAGCAAGGGGAGAGTGCAACCATGGCACTGCAGACGATGA
ACGGTTTTCAGTTGGCGGGCCGGCCGCTGAAGGTCGGGAGGCCTGCGCCG
GGGGGGGGCGGGGGGGGGGG

Synonyms

Publications