jgi.p|Nanoce1779_2|588665, mRNA_4300 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588665
Unique NamemRNA_4300
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length968
Alignment locationscaffold_10:237309..238950 -

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Properties
Property NameValue
TranscriptId588751
TrackFilteredModels2
ProteinId588665
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:237309..238950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588665gene_4300Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588665mRNA_4300-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4300CDS_4300Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4300 ID=mRNA_4300|Name=jgi.p|Nanoce1779_2|588665|organism=Nannochloropsis oceanica|type=mRNA|length=968bp
GGACGGCCCACACAGGGCCAGAAGGAGAAGGGTGAGGGGGATAAAAGAGG
AGGTCAGCGGGGAGGCTACACATAGAGTGTCCGCATACCCTTTTTGGATG
TGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCATCTATC
TCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCAGCAACA
GCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGTAAGCCC
GCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGATATTTT
AGAGCTGTACCACTGCCGAGCCGACGATCCGCGTGTTTTCGAAAGATACG
CGCCAGATGCAGTCTTTGACGATCCTGCGGGAACGCTGCATGGACGCGCG
GCTATTCGAGTCGCCATGGAAGCCCTGCCCAAGGTTTTTAGTCACGGCGA
GCCCCAAAATGTCGACATTACATACCATCCACCACTGGTTGGAGGAGAGC
GGAATCGTTTCCAAGATGGCGGCAACGGAAGCAGTACGGGGCGAGAGCAG
ATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATGGCGGCG
AGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTCATCAAA
AAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTTGACGAG
CAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAAGGACAC
CCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCAAGCACC
TAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGTGGTTGA
TGAGTCCCACGACATGGGCCAGCAATGCAGCCACCCATATCGAAGGGGAA
ACTATGTTTAATTAATTTGAAACAAAGCAAGACAGATATCAGATGTTCAC
GTACGAATGTACAATCAT
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protein sequence of jgi.p|Nanoce1779_2|588665

>mRNA_4300-protein ID=mRNA_4300-protein|Name=jgi.p|Nanoce1779_2|588665|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MWCPGFLPLPSLRTLHLSRRLRPFMRPLCSASSNSRVNFDAQADSNTWCK
PADPDMTSWAAPIVKDILELYHCRADDPRVFERYAPDAVFDDPAGTLHGR
AAIRVAMEALPKVFSHGEPQNVDITYHPPLVGGERNRFQDGGNGSSTGRE
QIGPQARITLVQMYEWRRDLLPFGLSPGVFLGHQKDSMVALPTVVYLTFD
EQTRLVTRHEDRWWGKDTQSTSFLVGPLHGLVKHLNGRMWAAWGARCYGG
*
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mRNA from alignment at scaffold_10:237309..238950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4300 ID=mRNA_4300|Name=jgi.p|Nanoce1779_2|588665|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp|location=Sequence derived from alignment at scaffold_10:237309..238950- (Nannochloropsis oceanica)
GGACGGCCCACACAGGGCCAGAAGGAGAAGGGTGAGGGGGATAAAAGAGG
AGGTCAGCGGGGAGGCTACACATAGAGTGTCCGCATACCCTTTTTGGATG
TGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTCCATCTATC
TCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAGCAGCAACA
GCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGTGTAAGCCC
GCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAAGATGTACG
TACCACAAGTAGCAGGGGCCTCTTATTATTTACGGCCTCTTATTTTTTTC
GTTGTTGTTGTCGTTGTAATTGAATAAAGTTGTCAATGAGATCAGCTCCG
GCCGTGATGTGCGTTAATGATATAGCGTTAATTATGTCGGAACACCACAT
TATGTCATCAACTTTTGATGAGTCTCTCCTTCCCGACGTCCGCTCCCCTC
TTCACGACAAAAACCGCAGATTTTAGAGCTGTACCACTGCCGAGCCGACG
ATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGTCTTTGACGATCCT
GCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCGCCATGGAAGCCCT
GGTACGTGTGCGTGGGGTCACCTGCCGGCTGCAGGTGCTCGTATTCGTAT
ATGTGTTTCATTTTCACGTTCTTGTGCACGCTTTTTGTAAATATTGTAAT
TACGACAGTGTTAAAGCTATGTGCCTACCTAGATCAGAATTAAAATATAG
CTGGCGTCGTCCTCTCGTGTAAGCTCGACGGCTCCCGGCACATGCTGTCA
CACGCGAAAAAGAAAGTTGAGAGCGAGCATTTTGGTTACTCCCACAGCAT
ACTTTACCACCCACCTTTTTACCGCGTTGTTATACCCTCATGAAATCCAA
GCATGCTGTCGCTCATTCATTCCTACCCCAATCTCTTCCTCTTCTCGACA
AAAAACAGCCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTCGACATT
ACATACCATCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCAAGATGG
CGGCAACGGAAGCAGTACGGGGCGAGAGCAGGTTTAAAGGAGGAAGAAGG
GGAAATGGGAAGAGGAAAGAAAAAATAGGCAACACTTCATGATCACATAG
TCTCCCTTCTTCCATCCTCAATAGATCGGCCCACAAGCCCGCATCACTCT
TGTACAGATGTACGAATGGCGGCGAGATCTGCTTCCTTTTGGCTTGTCGC
CGGGCGTCTTTTTGGGTCATCAAAAAGACTCCATGGTCGCCCTGCCCACC
GTGGTATATCTCACTTTTGACGAGCAAACCCGCCTTGTGACCAGGCACGA
AGATCGGTGGTGGGGCAAGGACACCCAGAGCACCTCCTTCCTTGTCGGCC
CCTTACATGGCCTTGTCAAGCACCTAAATGGGCGGATGTGGGCGGCATGG
GGTGCGCGGTGCTATGGTGGTTGATGAGTCCCACGACATGGGCCAGCAAT
GCAGCCACCCATATCGAAGGGGAAACTATGTTTAATTAATTTGAAACAAA
GCAAGACAGATATCAGATGTTCACGTACGAATGTACAATCAT
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Coding sequence (CDS) from alignment at scaffold_10:237309..238950-

>mRNA_4300 ID=mRNA_4300|Name=jgi.p|Nanoce1779_2|588665|organism=Nannochloropsis oceanica|type=CDS|length=3012bp|location=Sequence derived from alignment at scaffold_10:237309..238950- (Nannochloropsis oceanica)
ATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATGGCGGCG
AGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTCATCAAA
AAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTTGACGAG
CAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAAGGACAC
CCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCAAGCACC
TAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGTGGTTGA
CCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTCGACATTACATACCA
TCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCAAGATGGCGGCAACG
GAAGCAGTACGGGGCGAGAGCAGATTTTAGAGCTGTACCACTGCCGAGCC
GACGATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGTCTTTGACGA
TCCTGCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCGCCATGGAAG
CCCTGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACTCTC
CATCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGCCAG
CAGCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACATGGT
GTAAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTCAAA
GATATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATGGCG
GCGAGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTCATC
AAAAAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTTGAC
GAGCAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAAGGA
CACCCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCAAGC
ACCTAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGTGGT
TGACCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTCGACATTACATA
CCATCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCAAGATGGCGGCA
ACGGAAGCAGTACGGGGCGAGAGCAGATTTTAGAGCTGTACCACTGCCGA
GCCGACGATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGTCTTTGA
CGATCCTGCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCGCCATGG
AAGCCCTGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGAACT
CTCCATCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAGTGC
CAGCAGCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATACAT
GGTGTAAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATTGTC
AAAGATATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGAATG
GCGGCGAGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGGGTC
ATCAAAAAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACTTTT
GACGAGCAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGGCAA
GGACACCCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTGTCA
AGCACCTAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTATGGT
GGTTGACCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTCGACATTAC
ATACCATCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCAAGATGGCG
GCAACGGAAGCAGTACGGGGCGAGAGCAGATTTTAGAGCTGTACCACTGC
CGAGCCGACGATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGTCTT
TGACGATCCTGCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCGCCA
TGGAAGCCCTGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTTCGA
ACTCTCCATCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTGCAG
TGCCAGCAGCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCAATA
CATGGTGTAAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCAATT
GTCAAAGATATCGGCCCACAAGCCCGCATCACTCTTGTACAGATGTACGA
ATGGCGGCGAGATCTGCTTCCTTTTGGCTTGTCGCCGGGCGTCTTTTTGG
GTCATCAAAAAGACTCCATGGTCGCCCTGCCCACCGTGGTATATCTCACT
TTTGACGAGCAAACCCGCCTTGTGACCAGGCACGAAGATCGGTGGTGGGG
CAAGGACACCCAGAGCACCTCCTTCCTTGTCGGCCCCTTACATGGCCTTG
TCAAGCACCTAAATGGGCGGATGTGGGCGGCATGGGGTGCGCGGTGCTAT
GGTGGTTGACCCAAGGTTTTTAGTCACGGCGAGCCCCAAAATGTCGACAT
TACATACCATCCACCACTGGTTGGAGGAGAGCGGAATCGTTTCCAAGATG
GCGGCAACGGAAGCAGTACGGGGCGAGAGCAGATTTTAGAGCTGTACCAC
TGCCGAGCCGACGATCCGCGTGTTTTCGAAAGATACGCGCCAGATGCAGT
CTTTGACGATCCTGCGGGAACGCTGCATGGACGCGCGGCTATTCGAGTCG
CCATGGAAGCCCTGATGTGGTGTCCAGGCTTCTTGCCTCTTCCCTCCCTT
CGAACTCTCCATCTATCTCGTCGGCTTCGCCCCTTTATGCGGCCCCTCTG
CAGTGCCAGCAGCAACAGCAGAGTCAATTTCGACGCCCAGGCCGACAGCA
ATACATGGTGTAAGCCCGCCGATCCCGACATGACAAGCTGGGCCGCGCCA
ATTGTCAAAGAT
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Synonyms
Publications