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Properties
| Property Name | Value |
|---|
| TranscriptId | 20559 |
| Track | FilteredModels2 |
| ProteinId | 20473 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:234072..236920 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4298 ID=mRNA_4298|Name=jgi.p|Nanoce1779_2|20473|organism=Nannochloropsis oceanica|type=mRNA|length=2287bp
TCCTTTTTGTCTTTCATTGGTTTAGCGTCGTATAATTCCTCTCCTCGTAA
CTTACCTCTAGATCGCCGCAACCCAAACCCGCTGCTGACCCGACCAAGGT
GCAGAGAGGCGTGGTAGAGATGCAGGCCGCGAGTAGTCGGGCAAGCCACT
TCATCACCCTATTTTGACAGCGTCTTTCACCGTCCTTGGACCACAGGCGG
TCACTCTGCAGCGGGAGGTAATTCCGAACCCAAGATAGCCACAAGTATCG
CAGGCTTGTCCTCGCGGAGTGATCCTTTGAGTGGAAGTAGAGCAAACAAC
GACGGAAAGGACATTTCCCTCCCTTGACGCGGCAGGGGATGGACGATTCG
ATGGCCGGCGGCAACAAACGGCGACGGCATCCCTCCTCATCCTCCTCCTC
GTCCTCCTCTCGACAGCTACAAACCCTCCATTATCCACCACCAGACCCTA
GCGGTGGCGGCGGTGGGGGAGAGGGAAGCGCGGGTCCTAACCATTACCAC
CAACGGGCCTCGGAAACTGCCTCGGTGACAAGTGAGAGCAGCATCAATAA
CAACAGCAAGGCCAGAAAACGTTTCGTTTGGCCCGATGACCTGCATCGTG
ACTTCGTTGCTGCCATTTTCGATGTGGGCTTAAAATGCGCTTCTCCGAAA
ACAATATTAGAAATGATGAACAACACCAAGGACTTGACGCCCGATCACAT
AAAAAGTCACTTGCAGAAATACCGTTTGCACAGGGAGAGGGCCCGGGAGG
AATTTTTGCAGCATTTTGGGAAGAACCCTTTTGCATCTGGTGGGGGTGGA
GGAGGTGGCGTCACATTGGCGTGTATGAGGGGAAGAGAAGATGAAGGAGG
GATGTCAAGGGATGACTCTGCATCAAGCTTGAACAGTATGGGTGGTGGAG
ATGGAAGAGGAGGGCTGGAGAGTAGGGCGGGGGATGAGGATGCGTTTAGA
GGACAGATGAATTTGATTCGCGATTGCATTCAGATGCAAACTGGGTTTCA
GTCTGTGCTCCGGCAAGCTCTCATGCAGCAGACACAGCTCCAGCAGCAGT
TGCAGGCACACTTACAAGCATTGGGTTTCGATGGGCCGGCAGCGCGAGCA
GCAGCAGCTGCAGCGGCACTAGGAGGAACGGGAAGTCCTTCTGGGCCTTC
AGCCGCGCCAGTGGAGGGAAAACGGTCTGCAGAGGAGCTGATGCAGGAAG
AAATGAGGGAACACATGGACATGCACCGCCAGTTGGTGCTGAGAAAAAAT
GCTCAAATATCTCAGTATGAAGATGGGGCGAAGAGAGCTGCAGCAGCAGT
GGCAGCAGGAGGTTTGCATGGTTTAGTAGGAGGAGGAGGAGCGTCAGGAG
TGGGGATACCGTCTTCGTCGACAGGTGGTGGTGACAGAGGAGGAGGAGGT
GGAGGAGAAGGGAAAGCAACTGTGTCCTCTCCAGGCATATCGGAGCACGC
GGCGATGGCACAGCATCAATCTGGGGGAGGTGGTGTAGGAAGTGTTGGCT
TGCACGCTCAGGTGGCGGCAGCAACGACAGGGATGGGGGGAGGAGTAGGA
GGAGGAGGCGGGGGGGCAGGGCACCCAGCAGGATTAGATCTTGACGTGGA
TTTGTCCTCGTTTAGGTGGAATGAAGATGAAGACAACTTATTTAGTTTTT
TGATGGACAATCCCGTAGGCTAGGGAGGGAGGAAGGGAGGGTAGGGAAAG
GGAGGGGAAGAGAGAAGGTTTTATACAATGGATAGGGGGGAAGGGAGAAT
ACGGAAAGGGAGGGGAAGGGGGAAGAATTTATAGAATGGATATGCGATTT
AAAAGATAAAGCGAAGAGATCGACTTCGACCACCATAGGAGAGAGGGAGG
GAGGGAGGAAGACAAGAGACTGTTTCGTGGTGCGGATCAAAGGCGAGGGC
AAGAGCGAGTACAGATATAAACCATCAGATGGTCTTATAGTTCTATCTCC
ACCGCGTCAACACATTGAGTTAAGCCGCCGTATGCGAACTGAAGCTCCCA
CCGCAGAATCGAAATGGAAGCCATAGCACAAAGCCACGATGACTCCACGC
ATTGATTTTACCCGATAACCACCTCCACAACAAGATCAAGGCATGAAAAT
TCAAGTCATAAACCTAAATATCGGCCACCAGTTTGTCAAACAGAACATCA
CTGTTGCGTGCCGCTGATTAGGAGGGCGTAGACACTGTGGACCCCACGAC
TATCACAAAATCATTTCCTTTCTTGGAGTAAATATGTTCAAAAATTCAAA
AAAGCAAAAACAACAAGCAGGCATACAGCAGTAGCAA back to topprotein sequence of jgi.p|Nanoce1779_2|20473 >mRNA_4298-protein ID=mRNA_4298-protein|Name=jgi.p|Nanoce1779_2|20473|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MDDSMAGGNKRRRHPSSSSSSSSSRQLQTLHYPPPDPSGGGGGGEGSAGP
NHYHQRASETASVTSESSINNNSKARKRFVWPDDLHRDFVAAIFDVGLKC
ASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHFGKNPFAS
GGGGGGGVTLACMRGREDEGGMSRDDSASSLNSMGGGDGRGGLESRAGDE
DAFRGQMNLIRDCIQMQTGFQSVLRQALMQQTQLQQQLQAHLQALGFDGP
AARAAAAAAALGGTGSPSGPSAAPVEGKRSAEELMQEEMREHMDMHRQLV
LRKNAQISQYEDGAKRAAAAVAAGGLHGLVGGGGASGVGIPSSSTGGGDR
GGGGGGEGKATVSSPGISEHAAMAQHQSGGGGVGSVGLHAQVAAATTGMG
GGVGGGGGGAGHPAGLDLDVDLSSFRWNEDEDNLFSFLMDNPVG* back to topmRNA from alignment at scaffold_10:234072..236920- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4298 ID=mRNA_4298|Name=jgi.p|Nanoce1779_2|20473|organism=Nannochloropsis oceanica|type=mRNA|length=2849bp|location=Sequence derived from alignment at scaffold_10:234072..236920- (Nannochloropsis oceanica)
TCCTTTTTGTCTTTCATTGGTTTAGCGTCGTATAATTCCTCTCCTCGTAA
CTTACCTCTAGATCGCCGCAACCCAAACCCGCTGCTGACCCGACCAAGGT
GCAGAGAGGCGTGGTAGAGATGCAGGCCGCGAGTAGTCGGGCAAGCCACT
TCATCACCCTATTTTGACAGCGTCTTTCACCGTCCTTGGACCACAGGCGG
TCACTCTGCAGCGGGAGGTAATTCCGAACCCAAGATAGCCACAAGTATCG
CAGGCTTGTCCTCGCGGAGTGATCCTTTGAGTGGAAGTAGAGGTACGTGC
GTGCTCTGGGTAGGGGATGGGGCATACCGGTCAACTTGGCAAGTTGTTAG
AAGAGAGGGTATCGGGTTTGTGGCATATATATGGTTATGGTATCATCCAG
ATTGACGTCCCATTTTTGTGCCGTGGCTACTATTTGAATCTAGGCTCCAC
ATTGGGAGAAAATGCGTTTGTTGCAAGGCACTTGCGACTACTTTCTATCC
CGCTAGTGTCTGCCAGTGTGCTGTGTGCTGTTTTAATTCTGCGTGGGACA
CCTCATCTGGAGTATTTTTCACGCAAAGCAATCATCTATGCCCTCCCCCC
CCCCTCCCCCCTCTTTTTCGCGACAGCAAACAACGACGGAAAGGACATTT
CCCTCCCTTGACGCGGCAGGGGATGGACGATTCGATGGCCGGCGGCAACA
AACGGCGACGGCATCCCTCCTCATCCTCCTCCTCGTCCTCCTCTCGACAG
CTACAAACCCTCCATTATCCACCACCAGACCCTAGCGGTGGCGGCGGTGG
GGGAGAGGGAAGCGCGGGTCCTAACCATTACCACCAACGGGCCTCGGAAA
CTGCCTCGGTGACAAGTGAGAGCAGCATCAATAACAACAGCAAGGCCAGA
AAACGTTTCGTTTGGCCCGATGACCTGCATCGTGACTTCGTTGCTGCCAT
TTTCGATGTGGGCTTAAAATGCGCTTCTCCGAAAACAATATTAGAAATGA
TGAACAACACCAAGGACTTGACGCCCGATCACATAAAAAGTCACTTGCAG
AAATACCGTTTGCACAGGGAGAGGGCCCGGGAGGAATTTTTGCAGCATTT
TGGGAAGAACCCTTTTGCATCTGGTGGGGGTGGAGGAGGTGGCGTCACAT
TGGCGTGTATGAGGGGAAGAGAAGATGAAGGAGGGATGTCAAGGGATGAC
TCTGCATCAAGCTTGAACAGTATGGGTGGTGGAGATGGAAGAGGAGGGCT
GGAGAGTAGGGCGGGGGATGAGGATGCGTTTAGAGGACAGATGAATTTGA
TTCGCGATTGCATTCAGATGCAAACTGGGTTTCAGTCTGTGCTCCGGCAA
GCTCTCATGCAGCAGACACAGCTCCAGCAGCAGTTGCAGGCACACTTACA
AGCATTGGGTTTCGATGGGCCGGCAGCGCGAGCAGCAGCAGCTGCAGCGG
CACTAGGAGGAACGGGAAGTCCTTCTGGGCCTTCAGCCGCGCCAGTGGAG
GGTAAGGGGGGGAGAAGCAGCAATGAGCACCACATGTACCAGCAGCAGCC
GCAGCAGCAGGCGGCGCACACGCTCATGCCCATGCGCGGTCAGCAGTCAC
CCATACGCGGCCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCTACAGCTT
CCGCCAGAAGGCCGTCGGCCCCTGCCAGGTGTCCGTTCCAGTGGACGAGG
AGGAGGAGGGGGGGTTGTCGCGGGGGGAGGAAAACGGTCTGCAGAGGAGC
TGATGCAGGAAGAAATGAGGGAACACATGGACATGCACCGCCAGTTGGTG
CTGAGAAAAAATGCTCAAATATCTCAGTATGAAGATGGGGCGAAGAGAGC
TGCAGCAGCAGTGGCAGCAGGAGGTTTGCATGGTTTAGTAGGAGGAGGAG
GAGCGTCAGGAGTGGGGATACCGTCTTCGTCGACAGGTGGTGGTGACAGA
GGAGGAGGAGGTGGAGGAGAAGGGAAAGCAACTGTGTCCTCTCCAGGCAT
ATCGGAGCACGCGGCGATGGCACAGCATCAATCTGGGGGAGGTGGTGTAG
GAAGTGTTGGCTTGCACGCTCAGGTGGCGGCAGCAACGACAGGGATGGGG
GGAGGAGTAGGAGGAGGAGGCGGGGGGGCAGGGCACCCAGCAGGATTAGA
TCTTGACGTGGATTTGTCCTCGTTTAGGTGGAATGAAGATGAAGACAACT
TATTTAGTTTTTTGATGGACAATCCCGTAGGCTAGGGAGGGAGGAAGGGA
GGGTAGGGAAAGGGAGGGGAAGAGAGAAGGTTTTATACAATGGATAGGGG
GGAAGGGAGAATACGGAAAGGGAGGGGAAGGGGGAAGAATTTATAGAATG
GATATGCGATTTAAAAGATAAAGCGAAGAGATCGACTTCGACCACCATAG
GAGAGAGGGAGGGAGGGAGGAAGACAAGAGACTGTTTCGTGGTGCGGATC
AAAGGCGAGGGCAAGAGCGAGTACAGATATAAACCATCAGATGGTCTTAT
AGTTCTATCTCCACCGCGTCAACACATTGAGTTAAGCCGCCGTATGCGAA
CTGAAGCTCCCACCGCAGAATCGAAATGGAAGCCATAGCACAAAGCCACG
ATGACTCCACGCATTGATTTTACCCGATAACCACCTCCACAACAAGATCA
AGGCATGAAAATTCAAGTCATAAACCTAAATATCGGCCACCAGTTTGTCA
AACAGAACATCACTGTTGCGTGCCGCTGATTAGGAGGGCGTAGACACTGT
GGACCCCACGACTATCACAAAATCATTTCCTTTCTTGGAGTAAATATGTT
CAAAAATTCAAAAAAGCAAAAACAACAAGCAGGCATACAGCAGTAGCAA back to topCoding sequence (CDS) from alignment at scaffold_10:234072..236920- >mRNA_4298 ID=mRNA_4298|Name=jgi.p|Nanoce1779_2|20473|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_10:234072..236920- (Nannochloropsis oceanica)
GAAAACGGTCTGCAGAGGAGCTGATGCAGGAAGAAATGAGGGAACACATG
GACATGCACCGCCAGTTGGTGCTGAGAAAAAATGCTCAAATATCTCAGTA
TGAAGATGGGGCGAAGAGAGCTGCAGCAGCAGTGGCAGCAGGAGGTTTGC
ATGGTTTAGTAGGAGGAGGAGGAGCGTCAGGAGTGGGGATACCGTCTTCG
TCGACAGGTGGTGGTGACAGAGGAGGAGGAGGTGGAGGAGAAGGGAAAGC
AACTGTGTCCTCTCCAGGCATATCGGAGCACGCGGCGATGGCACAGCATC
AATCTGGGGGAGGTGGTGTAGGAAGTGTTGGCTTGCACGCTCAGGTGGCG
GCAGCAACGACAGGGATGGGGGGAGGAGTAGGAGGAGGAGGCGGGGGGGC
AGGGCACCCAGCAGGATTAGATCTTGACGTGGATTTGTCCTCGTTTAGGT
GGAATGAAGATGAAGACAACTTATTTAGTTTTTTGATGGACAATCCCGTA
GGCTAGATGGACGATTCGATGGCCGGCGGCAACAAACGGCGACGGCATCC
CTCCTCATCCTCCTCCTCGTCCTCCTCTCGACAGCTACAAACCCTCCATT
ATCCACCACCAGACCCTAGCGGTGGCGGCGGTGGGGGAGAGGGAAGCGCG
GGTCCTAACCATTACCACCAACGGGCCTCGGAAACTGCCTCGGTGACAAG
TGAGAGCAGCATCAATAACAACAGCAAGGCCAGAAAACGTTTCGTTTGGC
CCGATGACCTGCATCGTGACTTCGTTGCTGCCATTTTCGATGTGGGCTTA
AAATGCGCTTCTCCGAAAACAATATTAGAAATGATGAACAACACCAAGGA
CTTGACGCCCGATCACATAAAAAGTCACTTGCAGAAATACCGTTTGCACA
GGGAGAGGGCCCGGGAGGAATTTTTGCAGCATTTTGGGAAGAACCCTTTT
GCATCTGGTGGGGGTGGAGGAGGTGGCGTCACATTGGCGTGTATGAGGGG
AAGAGAAGATGAAGGAGGGATGTCAAGGGATGACTCTGCATCAAGCTTGA
ACAGTATGGGTGGTGGAGATGGAAGAGGAGGGCTGGAGAGTAGGGCGGGG
GATGAGGATGCGTTTAGAGGACAGATGAATTTGATTCGCGATTGCATTCA
GATGCAAACTGGGTTTCAGTCTGTGCTCCGGCAAGCTCTCATGCAGCAGA
CACAGCTCCAGCAGCAGTTGCAGGCACACTTACAAGCATTGGGTTTCGAT
GGGCCGGCAGCGCGAGCAGCAGCAGCTGCAGCGGCACTAGGAGGAACGGG
AAGTCCTTCTGGGCCTTCAGCCGCGCCAGTGGAGGGAAAACGGTCTGCAG
AGGAGCTGATGCAGGAAGAAATGAGGGAACACATGGACATGCACCGCCAG
TTGGTGCTGAGAAAAAATGCTCAAATATCTCAGTATGAAGATGGGGCGAA
GAGAGCTGCAGCAGCAGTGGCAGCAGGAGGTTTGCATGGTTTAGTAGGAG
GAGGAGGAGCGTCAGGAGTGGGGATACCGTCTTCGTCGACAGGTGGTGGT
GACAGAGGAGGAGGAGGTGGAGGAGAAGGGAAAGCAACTGTGTCCTCTCC
AGGCATATCGGAGCACGCGGCGATGGCACAGCATCAATCTGGGGGAGGTG
GTGTAGGAAGTGTTGGCTTGCACGCTCAGGTGGCGGCAGCAACGACAGGG
ATGGGGGGAGGAGTAGGAGGAGGAGGCGGGGGGGCAGGGCACCCAGCAGG
ATTAGATCTTGACGTGGATTTGTCCTCGTTTAGGTGGAATGAAGATGAAG
ACAACTTATTTAGTTTTTTGATGGACAATCCCGTAGGCTAGATGGACGAT
TCGATGGCCGGCGGCAACAAACGGCGACGGCATCCCTCCTCATCCTCCTC
CTCGTCCTCCTCTCGACAGCTACAAACCCTCCATTATCCACCACCAGACC
CTAGCGGTGGCGGCGGTGGGGGAGAGGGAAGCGCGGGTCCTAACCATTAC
CACCAACGGGCCTCGGAAACTGCCTCGGTGACAAGTGAGAGCAGCATCAA
TAACAACAGCAAGGCCAGAAAACGTTTCGTTTGGCCCGATGACCTGCATC
GTGACTTCGTTGCTGCCATTTTCGATGTGGGCTTAAAATGCGCTTCTCCG
AAAACAATATTAGAAATGATGAACAACACCAAGGACTTGACGCCCGATCA
CATAAAAAGTCACTTGCAGAAATACCGTTTGCACAGGGAGAGGGCCCGGG
AGGAATTTTTGCAGCATTTTGGGAAGAACCCTTTTGCATCTGGTGGGGGT
GGAGGAGGTGGCGTCACATTGGCGTGTATGAGGGGAAGAGAAGATGAAGG
AGGGATGTCAAGGGATGACTCTGCATCAAGCTTGAACAGTATGGGTGGTG
GAGATGGAAGAGGAGGGCTGGAGAGTAGGGCGGGGGATGAGGATGCGTTT
AGAGGACAGATGAATTTGATTCGCGATTGCATTCAGATGCAAACTGGGTT
TCAGTCTGTGCTCCGGCAAGCTCTCATGCAGCAGACACAGCTCCAGCAGC
AGTTGCAGGCACACTTACAAGCATTGGGTTTCGATGGGCCGGCAGCGCGA
GCAGCAGCAGCTGCAGCGGCACTAGGAGGAACGGGAAGTCCTTCTGGGCC
TTCAGCCGCGCCAGTGGAGG back to top
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