jgi.p|Nanoce1779_2|20275, mRNA_4297 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|20275
Unique Name	mRNA_4297
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2981
Alignment location	scaffold_10:231289..234269 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	20361
Track	FilteredModels2
ProteinId	20275

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:231289..234269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|20275	gene_4297	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|20275	mRNA_4297-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4297	CDS_4297	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:231289..234269+
coding sequence from alignment at scaffold_10:231289..234269+

mRNA sequence

>mRNA_4297 ID=mRNA_4297|Name=jgi.p|Nanoce1779_2|20275|organism=Nannochloropsis oceanica|type=mRNA|length=2981bp
ACGACTATGACGACTAATAGTCAACAATTTTCATTGGAGTGGACGACTGT
GACGACTAATAGTCATGCACAATCGCAGGACAGGACGACCTACGACTGAC
TAAGGAATATTTGTAGTCGTCCAACGTGTGTCTCGAACCAAAAGGGCAAA
ACAAAGACAGTACTTGGAAGCGCTCTTTCGTCGTGGCCAAGCTACTGAAC
CGTCGGCGACTCGAGTCGGAGTCTCGCTAAAGCATTGTTGATACATTAAC
TGATGCGGATCTAGTATTATTTGAAATACTGTGTGTGTGCTGCATTTACC
AGGACTCAATACAAGCCACCTTACAGATACAGGCAGAGTATCCTAGCTAG
CTGGTCTGCGCGGTGGTGGTACATGCCGGGCTGAGACCCGCCCGTCGCGA
TGAGGCAGTCCTCCAAGCATGCCTCAACCATCCTGCCCCTTCTCCTCCTC
GTCCACTTCCTGGCAGTCTGCACGCATGCCTTCCAGTCCCTTCGCGCACT
GAAGTGTCCGCTCGTCACGCAGCTGTCAAATGCCCATTCCTCTTCGTGGT
CCTCCACTGACACGGAAACTCGGCCAGAGCGAGAGACAGTGATCAAGTCC
GCCTCATCCCAACCATCACAAGCACCCCAAACCCCCCCAAAACGCCAGCC
CTGGCGCCGTCTGGGCAGCTTTGAGACATTGTTGGCCCGGAAAGCAGCAG
CAGGACCGCAGCGGTTGTCCATACCTCATGTCTGTGTGGCCGTTGTCGAT
GATGAACAAGGACTGTTGAATGCTCGGCTGCTTAAGCCAGCGTTAGTCTC
GCTCGTGCGGCGCCATCCCAAGCTGCGAGCCTGCATTCAGGGCACGGGCA
AGGTGGAGGGAGCGCCTGTGGCCGGGGTGCGACGAGGAGGAAGAGAAGTC
GACCCCTTGATGTGGTGGCCATGTGCGATGACACCTGAAGAGGTGGTAGA
AGAAGCGTTGTCATTCGACGACGGCAGCAGTAGCAGCAGCATTAATGACG
ATGCGCAGGACTCTCCTTTCTTCTTCTCTGTATCCTTTCAAGCGGCTTTG
GACAATACGGACATGGATTCGAGTCGTGGACCTCTGTGGCGACTGCATGT
AATGCGCTCTCAAGGGAGCAGAAAAGGCACCAAACCTGCAGGGCCAGGAG
GAGTAGGGCAGGTTGCTTTGCTCTTCATTTTCAACCACGCCATAAGCGAC
CAAGTCTCCTGCAACACGCTCATCCATGAGCTACTGTCGACGCTCGGAGA
GACCTCATCCTCATCCTCATCCTCATCCTCATCCTCCTCCTCCATCGCTT
CCCAGCCTTTCCCCCCCTCCATCGAAAAGGCCATCCTGGGTCCCGCCCGA
GCCACGGTCAGTTTCACAACTGCCCTCTACGCCGCCCGCGAATGTCTTTT
CGGCCTTCTCCCCACCACTCTCTACCCTACGCCTACAGCAACAGCAGCAG
CGACAGGGACCGCGACAGCACTAGACACCATCCCTCCTCCCCTCCCTGCA
GCGAACCGAAGGACCATATGTGTATTTCGTCGTGAGGAACCCTCCAGGCT
GTCCCTCTTGAAGGAAGAGTGTAAGAAGAGGGGGGTGACAGTGACAGCTG
CCTTGTCTGCGGCCATGCTGTATGCCACCAGTGATCTGGCGCATGGAGAG
GAAGAGGAAGGGAGGGCTGAAGGGGTACGAAACGGAAAAGAGCACAATTA
TCGTTTTTTGCTGTCCTTGAACATGCGCACATTTTCTCGCCGTAAGCTTG
GGGGAGGAACGGAGGGAGGGGAGGGAGAAAAGGAGAAAGGGAAGGATGAC
AAGGAGGGGGAGGAGGACTGGGAAGAGAATGCAGTGGCATCAGCAGCCGG
TGCAATGGACTTTATGGTCCGCTTGCAGGAAAGGCAAGGCAGAAACCTCC
TCTGTACTCACAAATCAACGACAAGCAAGAACGGAACGGTAGCCGCAACT
GCTGCAACAGCACCAGGAGCACCAAGACCACATGTAGCTGGAGAGGAAGC
ATTTTGGCTCCTGGCTAAACAATGCCGTCGTGAGTTTCTAGATTTTGTCT
CGGCCGGTTTCGTCCCCGAATCCGTTAATTTGTTTGATTGGGGTATGCAG
ACATTGGAATTGAATGAGGTAGTGGAGAAGGAGGCCGAAAACCCTAAGAC
TCTGGGAAGGGCGTATACTTGTGGAGTGTCGAACATGGGAGTGTTTGAAG
ATGGGATGGGAGGAGGGAGGCGCAGAGGCAGCAATCGCAGCAGCAACGGC
AGCCGAGGGATGGACGAAGATTTCTCTCTCTCTTCTTCAGCCTTTTCCTC
TTGTCTACCCTCCTATGGATCTCTCCGACTCCACGGAATTCACTATGCAA
CCAGTCACAGCTTGACGGGAAGCCTGTACCAGCTGTCGTGCGGGACGGTA
AATGGGGCGCTATGTCTGACATTCCACTACCCCTGGCCGTTGGTGGATCG
AGAGATGGCCAATCGGTTCGCGGACAGAGTGGTTCAAATCTTGAGGTGTA
TTGGTTGGGGAGAGAGAACGGAGGGAGGGAGGGAGGGAGGGAGGGACAGA
GAAGAGGAAAGTTGAAAGGGCCTTTGGGTGTGACTTCCAGTTAGTCATTG
GCAACGTGTCGATAGAAGGGGGAGGTTCTCCGGCGTGTTGGACCAGAGAG
GGAGGGATTGAAAATAGGATCGTAGAAGTGTACAGTATAGCTCAAGATAG
AGGGATCGACAGGATGCAGTGAAGCCGATAAGCCGTTGAAAAAATAACAT
GGAGGCAGGAATGGTGCTCCGGGAAGCAAATTGTTGCTACTGCTGTATGC
CTGCTTGTTGTTTTTGCTTTTTTGAATTTTTGAACATATTTACTCCAAGA
AAGGAAATGATTTTGTGATAGTCGTGGGGTCCACAGTGTCTACGCCCTCC
TAATCAGCGGCACGCAACAGTGATGTTCTGTTTGACAAACTGGTGGCCGA
TATTTAGGTTTATGACTTGAATTTTCATGCC

protein sequence of jgi.p|Nanoce1779_2|20275

>mRNA_4297-protein ID=mRNA_4297-protein|Name=jgi.p|Nanoce1779_2|20275|organism=Nannochloropsis oceanica|type=polypeptide|length=722bp
MRQSSKHASTILPLLLLVHFLAVCTHAFQSLRALKCPLVTQLSNAHSSSW
SSTDTETRPERETVIKSASSQPSQAPQTPPKRQPWRRLGSFETLLARKAA
AGPQRLSIPHVCVAVVDDEQGLLNARLLKPALVSLVRRHPKLRACIQGTG
KVEGAPVAGVRRGGREVDPLMWWPCAMTPEEVVEEALSFDDGSSSSSIND
DAQDSPFFFSVSFQAALDNTDMDSSRGPLWRLHVMRSQGSRKGTKPAGPG
GVGQVALLFIFNHAISDQVSCNTLIHELLSTLGETSSSSSSSSSSSSSIA
SQPFPPSIEKAILGPARATVSFTTALYAARECLFGLLPTTLYPTPTATAA
ATGTATALDTIPPPLPAANRRTICVFRREEPSRLSLLKEECKKRGVTVTA
ALSAAMLYATSDLAHGEEEEGRAEGVRNGKEHNYRFLLSLNMRTFSRRKL
GGGTEGGEGEKEKGKDDKEGEEDWEENAVASAAGAMDFMVRLQERQGRNL
LCTHKSTTSKNGTVAATAATAPGAPRPHVAGEEAFWLLAKQCRREFLDFV
SAGFVPESVNLFDWGMQTLELNEVVEKEAENPKTLGRAYTCGVSNMGVFE
DGMGGGRRRGSNRSSNGSRGMDEDFSLSSSAFSSCLPSYGSLRLHGIHYA
TSHSLTGSLYQLSCGTVNGALCLTFHYPWPLVDREMANRFADRVVQILRC
IGWGERTEGGREGGRDREEES*

mRNA from alignment at scaffold_10:231289..234269+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4297 ID=mRNA_4297|Name=jgi.p|Nanoce1779_2|20275|organism=Nannochloropsis oceanica|type=mRNA|length=2981bp|location=Sequence derived from alignment at scaffold_10:231289..234269+ (Nannochloropsis oceanica)
ACGACTATGACGACTAATAGTCAACAATTTTCATTGGAGTGGACGACTGT
GACGACTAATAGTCATGCACAATCGCAGGACAGGACGACCTACGACTGAC
TAAGGAATATTTGTAGTCGTCCAACGTGTGTCTCGAACCAAAAGGGCAAA
ACAAAGACAGTACTTGGAAGCGCTCTTTCGTCGTGGCCAAGCTACTGAAC
CGTCGGCGACTCGAGTCGGAGTCTCGCTAAAGCATTGTTGATACATTAAC
TGATGCGGATCTAGTATTATTTGAAATACTGTGTGTGTGCTGCATTTACC
AGGACTCAATACAAGCCACCTTACAGATACAGGCAGAGTATCCTAGCTAG
CTGGTCTGCGCGGTGGTGGTACATGCCGGGCTGAGACCCGCCCGTCGCGA
TGAGGCAGTCCTCCAAGCATGCCTCAACCATCCTGCCCCTTCTCCTCCTC
GTCCACTTCCTGGCAGTCTGCACGCATGCCTTCCAGTCCCTTCGCGCACT
GAAGTGTCCGCTCGTCACGCAGCTGTCAAATGCCCATTCCTCTTCGTGGT
CCTCCACTGACACGGAAACTCGGCCAGAGCGAGAGACAGTGATCAAGTCC
GCCTCATCCCAACCATCACAAGCACCCCAAACCCCCCCAAAACGCCAGCC
CTGGCGCCGTCTGGGCAGCTTTGAGACATTGTTGGCCCGGAAAGCAGCAG
CAGGACCGCAGCGGTTGTCCATACCTCATGTCTGTGTGGCCGTTGTCGAT
GATGAACAAGGACTGTTGAATGCTCGGCTGCTTAAGCCAGCGTTAGTCTC
GCTCGTGCGGCGCCATCCCAAGCTGCGAGCCTGCATTCAGGGCACGGGCA
AGGTGGAGGGAGCGCCTGTGGCCGGGGTGCGACGAGGAGGAAGAGAAGTC
GACCCCTTGATGTGGTGGCCATGTGCGATGACACCTGAAGAGGTGGTAGA
AGAAGCGTTGTCATTCGACGACGGCAGCAGTAGCAGCAGCATTAATGACG
ATGCGCAGGACTCTCCTTTCTTCTTCTCTGTATCCTTTCAAGCGGCTTTG
GACAATACGGACATGGATTCGAGTCGTGGACCTCTGTGGCGACTGCATGT
AATGCGCTCTCAAGGGAGCAGAAAAGGCACCAAACCTGCAGGGCCAGGAG
GAGTAGGGCAGGTTGCTTTGCTCTTCATTTTCAACCACGCCATAAGCGAC
CAAGTCTCCTGCAACACGCTCATCCATGAGCTACTGTCGACGCTCGGAGA
GACCTCATCCTCATCCTCATCCTCATCCTCATCCTCCTCCTCCATCGCTT
CCCAGCCTTTCCCCCCCTCCATCGAAAAGGCCATCCTGGGTCCCGCCCGA
GCCACGGTCAGTTTCACAACTGCCCTCTACGCCGCCCGCGAATGTCTTTT
CGGCCTTCTCCCCACCACTCTCTACCCTACGCCTACAGCAACAGCAGCAG
CGACAGGGACCGCGACAGCACTAGACACCATCCCTCCTCCCCTCCCTGCA
GCGAACCGAAGGACCATATGTGTATTTCGTCGTGAGGAACCCTCCAGGCT
GTCCCTCTTGAAGGAAGAGTGTAAGAAGAGGGGGGTGACAGTGACAGCTG
CCTTGTCTGCGGCCATGCTGTATGCCACCAGTGATCTGGCGCATGGAGAG
GAAGAGGAAGGGAGGGCTGAAGGGGTACGAAACGGAAAAGAGCACAATTA
TCGTTTTTTGCTGTCCTTGAACATGCGCACATTTTCTCGCCGTAAGCTTG
GGGGAGGAACGGAGGGAGGGGAGGGAGAAAAGGAGAAAGGGAAGGATGAC
AAGGAGGGGGAGGAGGACTGGGAAGAGAATGCAGTGGCATCAGCAGCCGG
TGCAATGGACTTTATGGTCCGCTTGCAGGAAAGGCAAGGCAGAAACCTCC
TCTGTACTCACAAATCAACGACAAGCAAGAACGGAACGGTAGCCGCAACT
GCTGCAACAGCACCAGGAGCACCAAGACCACATGTAGCTGGAGAGGAAGC
ATTTTGGCTCCTGGCTAAACAATGCCGTCGTGAGTTTCTAGATTTTGTCT
CGGCCGGTTTCGTCCCCGAATCCGTTAATTTGTTTGATTGGGGTATGCAG
ACATTGGAATTGAATGAGGTAGTGGAGAAGGAGGCCGAAAACCCTAAGAC
TCTGGGAAGGGCGTATACTTGTGGAGTGTCGAACATGGGAGTGTTTGAAG
ATGGGATGGGAGGAGGGAGGCGCAGAGGCAGCAATCGCAGCAGCAACGGC
AGCCGAGGGATGGACGAAGATTTCTCTCTCTCTTCTTCAGCCTTTTCCTC
TTGTCTACCCTCCTATGGATCTCTCCGACTCCACGGAATTCACTATGCAA
CCAGTCACAGCTTGACGGGAAGCCTGTACCAGCTGTCGTGCGGGACGGTA
AATGGGGCGCTATGTCTGACATTCCACTACCCCTGGCCGTTGGTGGATCG
AGAGATGGCCAATCGGTTCGCGGACAGAGTGGTTCAAATCTTGAGGTGTA
TTGGTTGGGGAGAGAGAACGGAGGGAGGGAGGGAGGGAGGGAGGGACAGA
GAAGAGGAAAGTTGAAAGGGCCTTTGGGTGTGACTTCCAGTTAGTCATTG
GCAACGTGTCGATAGAAGGGGGAGGTTCTCCGGCGTGTTGGACCAGAGAG
GGAGGGATTGAAAATAGGATCGTAGAAGTGTACAGTATAGCTCAAGATAG
AGGGATCGACAGGATGCAGTGAAGCCGATAAGCCGTTGAAAAAATAACAT
GGAGGCAGGAATGGTGCTCCGGGAAGCAAATTGTTGCTACTGCTGTATGC
CTGCTTGTTGTTTTTGCTTTTTTGAATTTTTGAACATATTTACTCCAAGA
AAGGAAATGATTTTGTGATAGTCGTGGGGTCCACAGTGTCTACGCCCTCC
TAATCAGCGGCACGCAACAGTGATGTTCTGTTTGACAAACTGGTGGCCGA
TATTTAGGTTTATGACTTGAATTTTCATGCC

Coding sequence (CDS) from alignment at scaffold_10:231289..234269+

>mRNA_4297 ID=mRNA_4297|Name=jgi.p|Nanoce1779_2|20275|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at scaffold_10:231289..234269+ (Nannochloropsis oceanica)
ATGAGGCAGTCCTCCAAGCATGCCTCAACCATCCTGCCCCTTCTCCTCCT
CGTCCACTTCCTGGCAGTCTGCACGCATGCCTTCCAGTCCCTTCGCGCAC
TGAAGTGTCCGCTCGTCACGCAGCTGTCAAATGCCCATTCCTCTTCGTGG
TCCTCCACTGACACGGAAACTCGGCCAGAGCGAGAGACAGTGATCAAGTC
CGCCTCATCCCAACCATCACAAGCACCCCAAACCCCCCCAAAACGCCAGC
CCTGGCGCCGTCTGGGCAGCTTTGAGACATTGTTGGCCCGGAAAGCAGCA
GCAGGACCGCAGCGGTTGTCCATACCTCATGTCTGTGTGGCCGTTGTCGA
TGATGAACAAGGACTGTTGAATGCTCGGCTGCTTAAGCCAGCGTTAGTCT
CGCTCGTGCGGCGCCATCCCAAGCTGCGAGCCTGCATTCAGGGCACGGGC
AAGGTGGAGGGAGCGCCTGTGGCCGGGGTGCGACGAGGAGGAAGAGAAGT
CGACCCCTTGATGTGGTGGCCATGTGCGATGACACCTGAAGAGGTGGTAG
AAGAAGCGTTGTCATTCGACGACGGCAGCAGTAGCAGCAGCATTAATGAC
GATGCGCAGGACTCTCCTTTCTTCTTCTCTGTATCCTTTCAAGCGGCTTT
GGACAATACGGACATGGATTCGAGTCGTGGACCTCTGTGGCGACTGCATG
TAATGCGCTCTCAAGGGAGCAGAAAAGGCACCAAACCTGCAGGGCCAGGA
GGAGTAGGGCAGGTTGCTTTGCTCTTCATTTTCAACCACGCCATAAGCGA
CCAAGTCTCCTGCAACACGCTCATCCATGAGCTACTGTCGACGCTCGGAG
AGACCTCATCCTCATCCTCATCCTCATCCTCATCCTCCTCCTCCATCGCT
TCCCAGCCTTTCCCCCCCTCCATCGAAAAGGCCATCCTGGGTCCCGCCCG
AGCCACGGTCAGTTTCACAACTGCCCTCTACGCCGCCCGCGAATGTCTTT
TCGGCCTTCTCCCCACCACTCTCTACCCTACGCCTACAGCAACAGCAGCA
GCGACAGGGACCGCGACAGCACTAGACACCATCCCTCCTCCCCTCCCTGC
AGCGAACCGAAGGACCATATGTGTATTTCGTCGTGAGGAACCCTCCAGGC
TGTCCCTCTTGAAGGAAGAGTGTAAGAAGAGGGGGGTGACAGTGACAGCT
GCCTTGTCTGCGGCCATGCTGTATGCCACCAGTGATCTGGCGCATGGAGA
GGAAGAGGAAGGGAGGGCTGAAGGGGTACGAAACGGAAAAGAGCACAATT
ATCGTTTTTTGCTGTCCTTGAACATGCGCACATTTTCTCGCCGTAAGCTT
GGGGGAGGAACGGAGGGAGGGGAGGGAGAAAAGGAGAAAGGGAAGGATGA
CAAGGAGGGGGAGGAGGACTGGGAAGAGAATGCAGTGGCATCAGCAGCCG
GTGCAATGGACTTTATGGTCCGCTTGCAGGAAAGGCAAGGCAGAAACCTC
CTCTGTACTCACAAATCAACGACAAGCAAGAACGGAACGGTAGCCGCAAC
TGCTGCAACAGCACCAGGAGCACCAAGACCACATGTAGCTGGAGAGGAAG
CATTTTGGCTCCTGGCTAAACAATGCCGTCGTGAGTTTCTAGATTTTGTC
TCGGCCGGTTTCGTCCCCGAATCCGTTAATTTGTTTGATTGGGGTATGCA
GACATTGGAATTGAATGAGGTAGTGGAGAAGGAGGCCGAAAACCCTAAGA
CTCTGGGAAGGGCGTATACTTGTGGAGTGTCGAACATGGGAGTGTTTGAA
GATGGGATGGGAGGAGGGAGGCGCAGAGGCAGCAATCGCAGCAGCAACGG
CAGCCGAGGGATGGACGAAGATTTCTCTCTCTCTTCTTCAGCCTTTTCCT
CTTGTCTACCCTCCTATGGATCTCTCCGACTCCACGGAATTCACTATGCA
ACCAGTCACAGCTTGACGGGAAGCCTGTACCAGCTGTCGTGCGGGACGGT
AAATGGGGCGCTATGTCTGACATTCCACTACCCCTGGCCGTTGGTGGATC
GAGAGATGGCCAATCGGTTCGCGGACAGAGTGGTTCAAATCTTGAGGTGT
ATTGGTTGGGGAGAGAGAACGGAGGGAGGGAGGGAGGGAGGGAGGGACAG
AGAAGAGGAAAGTTGA

Synonyms

Publications