jgi.p|Nanoce1779_2|588650, mRNA_4295 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588650
Unique Name	mRNA_4295
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1446
Alignment location	scaffold_10:226984..228429 +

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Properties


Property Name	Value
TranscriptId	588736
Track	FilteredModels2
ProteinId	588650

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:226984..228429 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588650	gene_4295	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588650	mRNA_4295-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4295	CDS_4295	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:226984..228429+
coding sequence from alignment at scaffold_10:226984..228429+

mRNA sequence

>mRNA_4295 ID=mRNA_4295|Name=jgi.p|Nanoce1779_2|588650|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
GGGCTTCTCGGTGGCCGCCACCGCTGCTACTGCTGACAATGATGGTGGTG
CTGGTGATGCTGTTGCTATTGCGGTGGTTACTAAGAAGTGGTTGAACAGC
GCGTACACTGCTCCAGCATTGACTACTTTGGTGTGTCCCTTGGCACACGC
CTACTTGCGGTCGGTCAACACCATGCTGCAGGCATCTCCTGGAGGGAAGG
GAGGAGGAGTGATGGCGCAACAGCAGAGGCAGCAACAACAAAAGCGACAG
CAGAATCGTTGGCGGCGGAAGTTGTTAAATGAGTACGCGGTGAAAGCGAG
CATACATATTTTGCGGGTACTCCACGAAGCTACTGCTGCTACTCCTTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCACGTCTGTGGGCATAAT
TCGCCGTCATACGGAGTTACTGGCGTTCACGACCCGTCATTCTCCTGCTC
CCCCCCCCCCAACATGAGTGCGTCATGGCTCTCTGTTTGTCTTAAGCCAG
CTCCATCACCCTGGGACCTTGAGGCACTAGGAGGAATTGCTCAGGCGTTA
GCTTGTTGGTGGGAGGCTACTGCTGCTTTGGCGGGACCCGAAGATCTGGG
AGGAGGAAGAGGAGGAGTAGGGGCAGCAGGATCAGCTCTGGTGGTGGGGC
AGGAGGAGCAGCAGTCGGTGCACCCTTGTCGGGCAGCTTTGATGAAAGAC
GTGAAGCGTATCACTGACTCCTTGTTTGACAGTCTCAGCAGCAGCGAAAA
TAGCAGTAGTAGAAGCGGTAGTGATGTCTTTAGATGCTCATCAAATTCCT
TTCATACGGCCGGATCTTCAGCTCTCCTCCACCAAGCCCCTGCTGCTTAC
CTACGTGCTTTGAGTCCCCTGCTCCTCGCTCTCTTGTCTTACGAAACAGG
ACAACAGCGCGTGATAACCTGGTGGCGGGCCTCGGGATTGGACAAGAATG
AAAACTTGAGGCTGATTTGCAATGGCGAGGAATTCAGAAACGAGAGTGTC
CTCAGCGGGCTGCGAGCTTTGGTAGACAAGGGGCTCATTATGAGCAAAGA
CCCAACGTTGGCTCCCTCCTCCGTCTCCTCCTCCTCTTCCACCTCTCCTT
CGACGAAGCAGAAAGATGGCCAGAGGATAGAAAGGGAAGGAGTAGAGGAA
ACGGACCAGTTATTTATAATCGAGGGTGATCGTGGAGGGCTTTCAAAGGT
GAAGAAGCGGTGGAGTGGGGTTCCAAATGGTGGAAGCAACAAACGCAACA
GAGCATTCTAAGAGAGAGCGGTACATCTATGTACACATTGTAGGAACGCA
TGTTTATTGATGAAACGATTTATAAGAATGAAGACTGTTCCAAAATTTGT
TTCTTGATGGCTTTTTGCTCTCGAACCACACGTTGGACGATTATTCTGCA
AAAATGGCCTGAACGACTGACTATTACGATAGTCGTCAATAGTCGT

protein sequence of jgi.p|Nanoce1779_2|588650

>mRNA_4295-protein ID=mRNA_4295-protein|Name=jgi.p|Nanoce1779_2|588650|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MLQASPGGKGGGVMAQQQRQQQQKRQQNRWRRKLLNEYAVKASIHILRVL
HEATAATPSSSSSSSSSSSSHVCGHNSPSYGVTGVHDPSFSCSPPPNMSA
SWLSVCLKPAPSPWDLEALGGIAQALACWWEATAALAGPEDLGGGRGGVG
AAGSALVVGQEEQQSVHPCRAALMKDVKRITDSLFDSLSSSENSSSRSGS
DVFRCSSNSFHTAGSSALLHQAPAAYLRALSPLLLALLSYETGQQRVITW
WRASGLDKNENLRLICNGEEFRNESVLSGLRALVDKGLIMSKDPTLAPSS
VSSSSSTSPSTKQKDGQRIEREGVEETDQLFIIEGDRGGLSKVKKRWSGV
PNGGSNKRNRAF*

mRNA from alignment at scaffold_10:226984..228429+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4295 ID=mRNA_4295|Name=jgi.p|Nanoce1779_2|588650|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp|location=Sequence derived from alignment at scaffold_10:226984..228429+ (Nannochloropsis oceanica)
GGGCTTCTCGGTGGCCGCCACCGCTGCTACTGCTGACAATGATGGTGGTG
CTGGTGATGCTGTTGCTATTGCGGTGGTTACTAAGAAGTGGTTGAACAGC
GCGTACACTGCTCCAGCATTGACTACTTTGGTGTGTCCCTTGGCACACGC
CTACTTGCGGTCGGTCAACACCATGCTGCAGGCATCTCCTGGAGGGAAGG
GAGGAGGAGTGATGGCGCAACAGCAGAGGCAGCAACAACAAAAGCGACAG
CAGAATCGTTGGCGGCGGAAGTTGTTAAATGAGTACGCGGTGAAAGCGAG
CATACATATTTTGCGGGTACTCCACGAAGCTACTGCTGCTACTCCTTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCACGTCTGTGGGCATAAT
TCGCCGTCATACGGAGTTACTGGCGTTCACGACCCGTCATTCTCCTGCTC
CCCCCCCCCCAACATGAGTGCGTCATGGCTCTCTGTTTGTCTTAAGCCAG
CTCCATCACCCTGGGACCTTGAGGCACTAGGAGGAATTGCTCAGGCGTTA
GCTTGTTGGTGGGAGGCTACTGCTGCTTTGGCGGGACCCGAAGATCTGGG
AGGAGGAAGAGGAGGAGTAGGGGCAGCAGGATCAGCTCTGGTGGTGGGGC
AGGAGGAGCAGCAGTCGGTGCACCCTTGTCGGGCAGCTTTGATGAAAGAC
GTGAAGCGTATCACTGACTCCTTGTTTGACAGTCTCAGCAGCAGCGAAAA
TAGCAGTAGTAGAAGCGGTAGTGATGTCTTTAGATGCTCATCAAATTCCT
TTCATACGGCCGGATCTTCAGCTCTCCTCCACCAAGCCCCTGCTGCTTAC
CTACGTGCTTTGAGTCCCCTGCTCCTCGCTCTCTTGTCTTACGAAACAGG
ACAACAGCGCGTGATAACCTGGTGGCGGGCCTCGGGATTGGACAAGAATG
AAAACTTGAGGCTGATTTGCAATGGCGAGGAATTCAGAAACGAGAGTGTC
CTCAGCGGGCTGCGAGCTTTGGTAGACAAGGGGCTCATTATGAGCAAAGA
CCCAACGTTGGCTCCCTCCTCCGTCTCCTCCTCCTCTTCCACCTCTCCTT
CGACGAAGCAGAAAGATGGCCAGAGGATAGAAAGGGAAGGAGTAGAGGAA
ACGGACCAGTTATTTATAATCGAGGGTGATCGTGGAGGGCTTTCAAAGGT
GAAGAAGCGGTGGAGTGGGGTTCCAAATGGTGGAAGCAACAAACGCAACA
GAGCATTCTAAGAGAGAGCGGTACATCTATGTACACATTGTAGGAACGCA
TGTTTATTGATGAAACGATTTATAAGAATGAAGACTGTTCCAAAATTTGT
TTCTTGATGGCTTTTTGCTCTCGAACCACACGTTGGACGATTATTCTGCA
AAAATGGCCTGAACGACTGACTATTACGATAGTCGTCAATAGTCGT

Coding sequence (CDS) from alignment at scaffold_10:226984..228429+

>mRNA_4295 ID=mRNA_4295|Name=jgi.p|Nanoce1779_2|588650|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_10:226984..228429+ (Nannochloropsis oceanica)
ATGCTGCAGGCATCTCCTGGAGGGAAGGGAGGAGGAGTGATGGCGCAACA
GCAGAGGCAGCAACAACAAAAGCGACAGCAGAATCGTTGGCGGCGGAAGT
TGTTAAATGAGTACGCGGTGAAAGCGAGCATACATATTTTGCGGGTACTC
CACGAAGCTACTGCTGCTACTCCTTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCCACGTCTGTGGGCATAATTCGCCGTCATACGGAGTTACTG
GCGTTCACGACCCGTCATTCTCCTGCTCCCCCCCCCCCAACATGAGTGCG
TCATGGCTCTCTGTTTGTCTTAAGCCAGCTCCATCACCCTGGGACCTTGA
GGCACTAGGAGGAATTGCTCAGGCGTTAGCTTGTTGGTGGGAGGCTACTG
CTGCTTTGGCGGGACCCGAAGATCTGGGAGGAGGAAGAGGAGGAGTAGGG
GCAGCAGGATCAGCTCTGGTGGTGGGGCAGGAGGAGCAGCAGTCGGTGCA
CCCTTGTCGGGCAGCTTTGATGAAAGACGTGAAGCGTATCACTGACTCCT
TGTTTGACAGTCTCAGCAGCAGCGAAAATAGCAGTAGTAGAAGCGGTAGT
GATGTCTTTAGATGCTCATCAAATTCCTTTCATACGGCCGGATCTTCAGC
TCTCCTCCACCAAGCCCCTGCTGCTTACCTACGTGCTTTGAGTCCCCTGC
TCCTCGCTCTCTTGTCTTACGAAACAGGACAACAGCGCGTGATAACCTGG
TGGCGGGCCTCGGGATTGGACAAGAATGAAAACTTGAGGCTGATTTGCAA
TGGCGAGGAATTCAGAAACGAGAGTGTCCTCAGCGGGCTGCGAGCTTTGG
TAGACAAGGGGCTCATTATGAGCAAAGACCCAACGTTGGCTCCCTCCTCC
GTCTCCTCCTCCTCTTCCACCTCTCCTTCGACGAAGCAGAAAGATGGCCA
GAGGATAGAAAGGGAAGGAGTAGAGGAAACGGACCAGTTATTTATAATCG
AGGGTGATCGTGGAGGGCTTTCAAAGGTGAAGAAGCGGTGGAGTGGGGTT
CCAAATGGTGGAAGCAACAAACGCAACAGAGCATTCTAA

Synonyms

Publications