jgi.p|Nanoce1779_2|19934, mRNA_4293 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|19934
Unique Name	mRNA_4293
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1416
Alignment location	scaffold_10:222257..224266 -

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Properties


Property Name	Value
TranscriptId	20020
Track	FilteredModels2
ProteinId	19934

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:222257..224266 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|19934	gene_4293	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|19934	mRNA_4293-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4293	CDS_4293	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:222257..224266-
coding sequence from alignment at scaffold_10:222257..224266-

mRNA sequence

>mRNA_4293 ID=mRNA_4293|Name=jgi.p|Nanoce1779_2|19934|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp
AGAGCTGCGCGCAACATCGCTTGTCGTTGAGAAGCAGGGTCAGTAGGGGC
AGAGCGGGCGAGACTGAAGCCGCGAAGTCAGCGGGCGAGGCAACGGCGGG
ACGCAAGCTCTCGACAATGTGGTCCACCACGGCGGCGCCTCGCAAGGGGA
TGAAACATTGCAGGTCCTCGGGTGTCTCCTCCTCCCCTGCGGCTGCTTCC
ATTTTTTCGTACAAGAATTGGGACAAAGTTCAAGAAACGTACCAGCTGCT
GAGTGCTTTGATTCTCAATGGGTGCTTGAGTGGTTTGAAATTTTGGCATT
TGATTCCGACGGTCCATCACTCAGCCTCCCACCTCCTCTCCTCTTTGCCT
GCGGTCGAGAACACACGCTAGTCCAACGACACCGCCACAACATCTCACGA
CATCAACATTGAAAAAGGCACGACAATACCGACTATGACGCAGCAACAGC
AGCAGCCTGGGGAAGATGCCAGCCTGGCAACCCGCATCCGCTACATGGCT
TATTCCAGTGAGAAGCAGTTAGGGGCCATCATGGCCTTGGTCGACCGGGA
CTTGTCAGAGCCTTACTCCATTTTCACATACCGCTACTTCCTATGCGGGT
GGCCTGACCTATGCATCCTTGCGTACATTGACGACGACCCTACTAGAACT
GCGAAAGATCGAGTTGACAGCATCAAGACCAAATCTGGAGAAGGGGGCGA
TTGGCACGGCACGCTCGTGGGGGTGATCGTGGGCAAGGCAGATAATGAGG
GGAGCACGGACCCTAAGGGTTTGTGTGGGTATATTGCCATGTTGGCCGTG
GAGACGTCTTATCGTCGAGCAGGCATAGGACGAAAGCTTGTCGGCCGTGC
CGTCGACCGTATGGTGGAAATTGGCTGTAAAGAAGTTGCACTCGAAGCCG
AGGTGACCAATAAAGGAGCTTTGCATTTGTATGAAAGACAGGGTTTCGCT
AGGGAGGAACGTTTGTTTAAATATTATCTAAATGGCGTGGATGCATTTAG
GCTTAAGTTGTGGTTGGCCGGGGGTGGGGAGGATGTTGGAGGGGGGGAGG
AGGATGGAGGGCACAATAAAATACACCAGCATAGTCCTGGGGAGGAGGAA
GGAGAAGGATGTTGCGACGATAGAGATCATTATCACCATCATCACCACGA
GAAGGAGGGGGAGGAGAAGGAGAAGGAGGAGTACGCGCACGGACTCCCGC
GCGGAGGGCACCAGCACTCCCACGACGGAGGGGGGAGTTGTTGTGGTGGT
CACCAACATGGCGAGGAGGACGAGAACGACCATATAGCCACCCAACAGAG
TTTAGCATTGTTGAGTCTAGAAACCAGAATGGTCGGGGCGGCGCGAGTAG
CCAAATCGGCAGCGGACGGTGATGCGGCAAGGGTTCTCGGAGGGGGAGAG
GGGGAGATGACATGAT

protein sequence of jgi.p|Nanoce1779_2|19934

>mRNA_4293-protein ID=mRNA_4293-protein|Name=jgi.p|Nanoce1779_2|19934|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MTQQQQQPGEDASLATRIRYMAYSSEKQLGAIMALVDRDLSEPYSIFTYR
YFLCGWPDLCILAYIDDDPTRTAKDRVDSIKTKSGEGGDWHGTLVGVIVG
KADNEGSTDPKGLCGYIAMLAVETSYRRAGIGRKLVGRAVDRMVEIGCKE
VALEAEVTNKGALHLYERQGFAREERLFKYYLNGVDAFRLKLWLAGGGED
VGGGEEDGGHNKIHQHSPGEEEGEGCCDDRDHYHHHHHEKEGEEKEKEEY
AHGLPRGGHQHSHDGGGSCCGGHQHGEEDENDHIATQQSLALLSLETRMV
GAARVAKSAADGDAARVLGGGEGEMT*

mRNA from alignment at scaffold_10:222257..224266-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4293 ID=mRNA_4293|Name=jgi.p|Nanoce1779_2|19934|organism=Nannochloropsis oceanica|type=mRNA|length=2010bp|location=Sequence derived from alignment at scaffold_10:222257..224266- (Nannochloropsis oceanica)
AGAGCTGCGCGCAACATCGCTTGTCGTTGAGAAGCAGGGTCAGTAGGGGC
AGAGCGGGCGAGACTGAAGCCGCGAAGTCAGCGGGCGAGGCAACGGCGGG
ACGCAAGCTCTCGACAATGTGGTCCACCACGGCGGCGCCTCGCAAGGGGA
TGAAACATTGCAGGTCCTCGGGTGTCTCCTCCTCCCCTGCGGCTGCTTCC
ATTTTTTCGTACAAGAATTGGTAGGCCTCGATGCAGGAGTGGCAGCCCCG
ATCCTTGATGCCACCGCCCTGACCGCCATCCTCCCCCAGTAGCTCCCCTA
GACATGCCGCTACATTTTCCCAGACCATGGCCTTACTATGTGCACGGGAG
GGGAGCGTGAGCGTGGTACAACTTGCGTTGAACGTACAAATGAGGAACTT
GGGCCGCGATTCGGGCCGCGATTTTGCTTTGACTTGCTCACAATCTCTCC
ACCACACATATCCACCCGCACACAACCTCTCAGGGACAAAGTTCAAGAAA
CGTACCAGCTGCTGAGTGCTTTGATTCTCAATGGGTGCTTGAGTGGTTTG
AAATTTTGGCATTTGATTCCGACGGTCCATCACTCAGCCTCCCACCTCCT
CTCCTCTTTGCCTGCGGTCGAGAACACACGCTAGTCCAACGACACCGCCA
CAACATCTCACGACATCAACATTGAAAAAGGCACGACAATACCGACTATG
ACGCAGCAACAGCAGCAGCCTGGGGAAGATGCCAGGTATTATTTCCCCTA
TATCCTGCCCTAGCCTCCCCACTTGCCCCCTCCTTCATGTCACACTTCTC
TCCTCTTCACACAAATCTTGACTGCCTGTACACAACAGCCTGGCAACCCG
CATCCGCTACATGGCTTATTCCAGTGAGAAGCAGTTAGGGGCCATCATGG
CCTTGGTCGACCGGGACTTGTCAGAGCCTTACTCCATTTTCACATACCGC
TACTTCCTATGCGGGTGGCCTGACCTATGCATCCTTGCGTACATTGACGA
CGACCCTACTAGAACTGCGAAAGATCGAGTTGACAGCATCAAGACCAAAT
CTGGAGAAGGGGGCGATTGGCACGGCACGCTCGTGGGGGTGATCGTGGGC
AAGGCAGATAATGAGGGGAGCACGGACCCTAAGGGTTTGTGTGGGTATAT
TGCCATGTTGGCCGTGGAGACGTCTTATCGTCGAGCAGGCATAGGTATGA
AGTACTCTTACTTGTGATAGGTCTAAGGGTGAGCTTGTCATGTCTATGTG
GATCCCAAATGCTGGCGCTCGCCAACAGGGCACTTATCGAGAGGATGTCA
ATCGACAAATTTGTTGATCCGACCACTCGCTTACCCAGAATGTCATGTTA
GTGAGACGACATATATTGACAGCATTTGCTTAACTCTTTGCCATGACTCA
CCCCAAATCCCCCCCAAAAAAGGACGAAAGCTTGTCGGCCGTGCCGTCGA
CCGTATGGTGGAAATTGGCTGTAAAGAAGTTGCACTCGAAGCCGAGGTGA
CCAATAAAGGAGCTTTGCATTTGTATGAAAGACAGGGTTTCGCTAGGGAG
GAACGTTTGTTTAAATATTATCTAAATGGCGTGGATGCATTTAGGCTTAA
GTTGTGGTTGGCCGGGGGTGGGGAGGATGTTGGAGGGGGGGAGGAGGATG
GAGGGCACAATAAAATACACCAGCATAGTCCTGGGGAGGAGGAAGGAGAA
GGATGTTGCGACGATAGAGATCATTATCACCATCATCACCACGAGAAGGA
GGGGGAGGAGAAGGAGAAGGAGGAGTACGCGCACGGACTCCCGCGCGGAG
GGCACCAGCACTCCCACGACGGAGGGGGGAGTTGTTGTGGTGGTCACCAA
CATGGCGAGGAGGACGAGAACGACCATATAGCCACCCAACAGAGTTTAGC
ATTGTTGAGTCTAGAAACCAGAATGGTCGGGGCGGCGCGAGTAGCCAAAT
CGGCAGCGGACGGTGATGCGGCAAGGGTTCTCGGAGGGGGAGAGGGGGAG
ATGACATGAT

Coding sequence (CDS) from alignment at scaffold_10:222257..224266-

>mRNA_4293 ID=mRNA_4293|Name=jgi.p|Nanoce1779_2|19934|organism=Nannochloropsis oceanica|type=CDS|length=2943bp|location=Sequence derived from alignment at scaffold_10:222257..224266- (Nannochloropsis oceanica)
GACGAAAGCTTGTCGGCCGTGCCGTCGACCGTATGGTGGAAATTGGCTGT
AAAGAAGTTGCACTCGAAGCCGAGGTGACCAATAAAGGAGCTTTGCATTT
GTATGAAAGACAGGGTTTCGCTAGGGAGGAACGTTTGTTTAAATATTATC
TAAATGGCGTGGATGCATTTAGGCTTAAGTTGTGGTTGGCCGGGGGTGGG
GAGGATGTTGGAGGGGGGGAGGAGGATGGAGGGCACAATAAAATACACCA
GCATAGTCCTGGGGAGGAGGAAGGAGAAGGATGTTGCGACGATAGAGATC
ATTATCACCATCATCACCACGAGAAGGAGGGGGAGGAGAAGGAGAAGGAG
GAGTACGCGCACGGACTCCCGCGCGGAGGGCACCAGCACTCCCACGACGG
AGGGGGGAGTTGTTGTGGTGGTCACCAACATGGCGAGGAGGACGAGAACG
ACCATATAGCCACCCAACAGAGTTTAGCATTGTTGAGTCTAGAAACCAGA
ATGGTCGGGGCGGCGCGAGTAGCCAAATCGGCAGCGGACGGTGATGCGGC
AAGGGTTCTCGGAGGGGGAGAGGGGGAGATGACATGACCTGGCAACCCGC
ATCCGCTACATGGCTTATTCCAGTGAGAAGCAGTTAGGGGCCATCATGGC
CTTGGTCGACCGGGACTTGTCAGAGCCTTACTCCATTTTCACATACCGCT
ACTTCCTATGCGGGTGGCCTGACCTATGCATCCTTGCGTACATTGACGAC
GACCCTACTAGAACTGCGAAAGATCGAGTTGACAGCATCAAGACCAAATC
TGGAGAAGGGGGCGATTGGCACGGCACGCTCGTGGGGGTGATCGTGGGCA
AGGCAGATAATGAGGGGAGCACGGACCCTAAGGGTTTGTGTGGGTATATT
GCCATGTTGGCCGTGGAGACGTCTTATCGTCGAGCAGGCATAGATGACGC
AGCAACAGCAGCAGCCTGGGGAAGATGCCAGGACGAAAGCTTGTCGGCCG
TGCCGTCGACCGTATGGTGGAAATTGGCTGTAAAGAAGTTGCACTCGAAG
CCGAGGTGACCAATAAAGGAGCTTTGCATTTGTATGAAAGACAGGGTTTC
GCTAGGGAGGAACGTTTGTTTAAATATTATCTAAATGGCGTGGATGCATT
TAGGCTTAAGTTGTGGTTGGCCGGGGGTGGGGAGGATGTTGGAGGGGGGG
AGGAGGATGGAGGGCACAATAAAATACACCAGCATAGTCCTGGGGAGGAG
GAAGGAGAAGGATGTTGCGACGATAGAGATCATTATCACCATCATCACCA
CGAGAAGGAGGGGGAGGAGAAGGAGAAGGAGGAGTACGCGCACGGACTCC
CGCGCGGAGGGCACCAGCACTCCCACGACGGAGGGGGGAGTTGTTGTGGT
GGTCACCAACATGGCGAGGAGGACGAGAACGACCATATAGCCACCCAACA
GAGTTTAGCATTGTTGAGTCTAGAAACCAGAATGGTCGGGGCGGCGCGAG
TAGCCAAATCGGCAGCGGACGGTGATGCGGCAAGGGTTCTCGGAGGGGGA
GAGGGGGAGATGACATGACCTGGCAACCCGCATCCGCTACATGGCTTATT
CCAGTGAGAAGCAGTTAGGGGCCATCATGGCCTTGGTCGACCGGGACTTG
TCAGAGCCTTACTCCATTTTCACATACCGCTACTTCCTATGCGGGTGGCC
TGACCTATGCATCCTTGCGTACATTGACGACGACCCTACTAGAACTGCGA
AAGATCGAGTTGACAGCATCAAGACCAAATCTGGAGAAGGGGGCGATTGG
CACGGCACGCTCGTGGGGGTGATCGTGGGCAAGGCAGATAATGAGGGGAG
CACGGACCCTAAGGGTTTGTGTGGGTATATTGCCATGTTGGCCGTGGAGA
CGTCTTATCGTCGAGCAGGCATAGATGACGCAGCAACAGCAGCAGCCTGG
GGAAGATGCCAGGACGAAAGCTTGTCGGCCGTGCCGTCGACCGTATGGTG
GAAATTGGCTGTAAAGAAGTTGCACTCGAAGCCGAGGTGACCAATAAAGG
AGCTTTGCATTTGTATGAAAGACAGGGTTTCGCTAGGGAGGAACGTTTGT
TTAAATATTATCTAAATGGCGTGGATGCATTTAGGCTTAAGTTGTGGTTG
GCCGGGGGTGGGGAGGATGTTGGAGGGGGGGAGGAGGATGGAGGGCACAA
TAAAATACACCAGCATAGTCCTGGGGAGGAGGAAGGAGAAGGATGTTGCG
ACGATAGAGATCATTATCACCATCATCACCACGAGAAGGAGGGGGAGGAG
AAGGAGAAGGAGGAGTACGCGCACGGACTCCCGCGCGGAGGGCACCAGCA
CTCCCACGACGGAGGGGGGAGTTGTTGTGGTGGTCACCAACATGGCGAGG
AGGACGAGAACGACCATATAGCCACCCAACAGAGTTTAGCATTGTTGAGT
CTAGAAACCAGAATGGTCGGGGCGGCGCGAGTAGCCAAATCGGCAGCGGA
CGGTGATGCGGCAAGGGTTCTCGGAGGGGGAGAGGGGGAGATGACATGAC
CTGGCAACCCGCATCCGCTACATGGCTTATTCCAGTGAGAAGCAGTTAGG
GGCCATCATGGCCTTGGTCGACCGGGACTTGTCAGAGCCTTACTCCATTT
TCACATACCGCTACTTCCTATGCGGGTGGCCTGACCTATGCATCCTTGCG
TACATTGACGACGACCCTACTAGAACTGCGAAAGATCGAGTTGACAGCAT
CAAGACCAAATCTGGAGAAGGGGGCGATTGGCACGGCACGCTCGTGGGGG
TGATCGTGGGCAAGGCAGATAATGAGGGGAGCACGGACCCTAAGGGTTTG
TGTGGGTATATTGCCATGTTGGCCGTGGAGACGTCTTATCGTCGAGCAGG
CATAGATGACGCAGCAACAGCAGCAGCCTGGGGAAGATGCCAG

Synonyms

Publications