jgi.p|Nanoce1779_2|588639, mRNA_4292 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588639
Unique NamemRNA_4292
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1637
Alignment locationscaffold_10:220478..222114 -

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Properties
Property NameValue
TranscriptId588725
TrackFilteredModels2
ProteinId588639
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:220478..222114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588639gene_4292Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588639mRNA_4292-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4292CDS_4292Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4292 ID=mRNA_4292|Name=jgi.p|Nanoce1779_2|588639|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp
GTCTCAACGGCTTGTTCAAGTGTTTGAATTACGAACCAGCACCCGAAGTC
CTTGGCAATCAACCTAGCGCCCACTCGCCTCTCTCTCTCACCACACAGGA
AGCAATTGTACCACAAGGTCCTAATCATGATATATTGTGCTGTTCTCTCA
TGGGAAAGAGACTTTGCTTGACTGGCATTGCTTGGCAAGTAGTCAAGGAA
GCTCTCTCGTCCTGCATGTCGCCATACCCTCGCTCAGGCCACGCTACGCA
CTGAGCTTCTGCAACTGAACCCACCACACTGTCCTTTCTCACTCACCATC
CAACACACAATACATATGAACACTCGCAGTGAGGGCGAGGAGATGCCGTA
CCTCAAGAGCAACTGGTCATCCATGCCTCCTTTGGAGGAGTTTGGGCGCT
TCGCGTTTGGGGAAATTTTCACCATACCAGAAATGACCTTGACACAAGAG
GATCCCACGGCCCGGGCCTGCTACTTATACGTGGCCTTAGAGCACCAAGC
ACGCGTCCAGGAGTTGGATTTAATATGCGCGGCGCCGACCATCGTCGTGA
ATCTGATGCGGGGCAAATCCTCCACGGCCATGAGCTACACCTACTTGACA
ACCCTCAAGGGTCAAAGCTCAGAGGAATATCCAGGGCTCTTTGTCTTTCG
CATCGACGCATCTCTGTTGTCGCATGTGGAAGTCTGGCAGCTCCAGATCA
AATTCTTGTTTCCCCGGGTGGGGGAGAATTCGTTGCTGGTCAAGAAGATA
AGTGTAATTGTGGAGGACCAGGCCAAGAGACGGGGGGAGCTCAACATGAA
GGCCGAGGCAGGCGCAGGCAGGCGAGGGGTTCTCGACCGCCCCAATTCCA
CGGCCATTCAGACTTTTGTTCCGCCTCCTCAGCAGCAACGACAGCAGGGC
TACGGCCCGCCCCCGCCCCCCCAGCCTTTCAATGCGGAGAGTGCCGTAAT
GGTGGGGCTGGTGGTGGTGGACCAAGTTCTGGGTGTCATGACCAAGGAGA
TCCAGGAGAACCTTCAGTCAACTTGTAGGGGGGTAGAAGAACGCTTGCTT
GCAGATTTAAGCAGGCTAGAGGAGAAGATGGGGCGGATTGAGGAGGTGTA
TGATGACATTGCTGCGGACATTCGATTGACCTCGCTGCTGTCGGCATTGG
AAGGGGCCAAAATTGCGCGGGGCATGGCAAACGCGGAAGAAGAAGAGAGA
GGAATGGAAGGAGCAGCACAGGAGGGATTATCGGAGGAAAAGGGTGAGGA
CGTAGAGAGCCCAACGGGGGCTTGGGGGACCCCGGGCGGATTGACGCCAG
ATATGTATTATGGCGTTGGTGTCGGAGTGTAAAGAGATTAAAAAGTGGAG
GGGTACTATGAAAGATGCACGAGTATGTGAGTGGAAAAGAGCGAAATATG
TGAGAGGAAAAGAGCGATGTGATGTGAAAGTGATTGAGTGCGGTGAGTCA
TGCGATGAAGGGGAAGAGAAGTAGGGAAACAGACCAGAGGTGAATCATAA
TGGCCCTCGTTTCGAGCTCAAATGGCCACAAAAGAAAGATTCCGAGAGCC
TCAACAGCATCAATCGGGAAAGCCGAAAGCAAAACAGAGAGTGGTCGACT
AAGATTGATCCAAAGAAAAAACAAAACATGTCCGTAA
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protein sequence of jgi.p|Nanoce1779_2|588639

>mRNA_4292-protein ID=mRNA_4292-protein|Name=jgi.p|Nanoce1779_2|588639|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MNTRSEGEEMPYLKSNWSSMPPLEEFGRFAFGEIFTIPEMTLTQEDPTAR
ACYLYVALEHQARVQELDLICAAPTIVVNLMRGKSSTAMSYTYLTTLKGQ
SSEEYPGLFVFRIDASLLSHVEVWQLQIKFLFPRVGENSLLVKKISVIVE
DQAKRRGELNMKAEAGAGRRGVLDRPNSTAIQTFVPPPQQQRQQGYGPPP
PPQPFNAESAVMVGLVVVDQVLGVMTKEIQENLQSTCRGVEERLLADLSR
LEEKMGRIEEVYDDIAADIRLTSLLSALEGAKIARGMANAEEEERGMEGA
AQEGLSEEKGEDVESPTGAWGTPGGLTPDMYYGVGVGV*
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mRNA from alignment at scaffold_10:220478..222114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4292 ID=mRNA_4292|Name=jgi.p|Nanoce1779_2|588639|organism=Nannochloropsis oceanica|type=mRNA|length=1637bp|location=Sequence derived from alignment at scaffold_10:220478..222114- (Nannochloropsis oceanica)
GTCTCAACGGCTTGTTCAAGTGTTTGAATTACGAACCAGCACCCGAAGTC
CTTGGCAATCAACCTAGCGCCCACTCGCCTCTCTCTCTCACCACACAGGA
AGCAATTGTACCACAAGGTCCTAATCATGATATATTGTGCTGTTCTCTCA
TGGGAAAGAGACTTTGCTTGACTGGCATTGCTTGGCAAGTAGTCAAGGAA
GCTCTCTCGTCCTGCATGTCGCCATACCCTCGCTCAGGCCACGCTACGCA
CTGAGCTTCTGCAACTGAACCCACCACACTGTCCTTTCTCACTCACCATC
CAACACACAATACATATGAACACTCGCAGTGAGGGCGAGGAGATGCCGTA
CCTCAAGAGCAACTGGTCATCCATGCCTCCTTTGGAGGAGTTTGGGCGCT
TCGCGTTTGGGGAAATTTTCACCATACCAGAAATGACCTTGACACAAGAG
GATCCCACGGCCCGGGCCTGCTACTTATACGTGGCCTTAGAGCACCAAGC
ACGCGTCCAGGAGTTGGATTTAATATGCGCGGCGCCGACCATCGTCGTGA
ATCTGATGCGGGGCAAATCCTCCACGGCCATGAGCTACACCTACTTGACA
ACCCTCAAGGGTCAAAGCTCAGAGGAATATCCAGGGCTCTTTGTCTTTCG
CATCGACGCATCTCTGTTGTCGCATGTGGAAGTCTGGCAGCTCCAGATCA
AATTCTTGTTTCCCCGGGTGGGGGAGAATTCGTTGCTGGTCAAGAAGATA
AGTGTAATTGTGGAGGACCAGGCCAAGAGACGGGGGGAGCTCAACATGAA
GGCCGAGGCAGGCGCAGGCAGGCGAGGGGTTCTCGACCGCCCCAATTCCA
CGGCCATTCAGACTTTTGTTCCGCCTCCTCAGCAGCAACGACAGCAGGGC
TACGGCCCGCCCCCGCCCCCCCAGCCTTTCAATGCGGAGAGTGCCGTAAT
GGTGGGGCTGGTGGTGGTGGACCAAGTTCTGGGTGTCATGACCAAGGAGA
TCCAGGAGAACCTTCAGTCAACTTGTAGGGGGGTAGAAGAACGCTTGCTT
GCAGATTTAAGCAGGCTAGAGGAGAAGATGGGGCGGATTGAGGAGGTGTA
TGATGACATTGCTGCGGACATTCGATTGACCTCGCTGCTGTCGGCATTGG
AAGGGGCCAAAATTGCGCGGGGCATGGCAAACGCGGAAGAAGAAGAGAGA
GGAATGGAAGGAGCAGCACAGGAGGGATTATCGGAGGAAAAGGGTGAGGA
CGTAGAGAGCCCAACGGGGGCTTGGGGGACCCCGGGCGGATTGACGCCAG
ATATGTATTATGGCGTTGGTGTCGGAGTGTAAAGAGATTAAAAAGTGGAG
GGGTACTATGAAAGATGCACGAGTATGTGAGTGGAAAAGAGCGAAATATG
TGAGAGGAAAAGAGCGATGTGATGTGAAAGTGATTGAGTGCGGTGAGTCA
TGCGATGAAGGGGAAGAGAAGTAGGGAAACAGACCAGAGGTGAATCATAA
TGGCCCTCGTTTCGAGCTCAAATGGCCACAAAAGAAAGATTCCGAGAGCC
TCAACAGCATCAATCGGGAAAGCCGAAAGCAAAACAGAGAGTGGTCGACT
AAGATTGATCCAAAGAAAAAACAAAACATGTCCGTAA
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Coding sequence (CDS) from alignment at scaffold_10:220478..222114-

>mRNA_4292 ID=mRNA_4292|Name=jgi.p|Nanoce1779_2|588639|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_10:220478..222114- (Nannochloropsis oceanica)
ATGAACACTCGCAGTGAGGGCGAGGAGATGCCGTACCTCAAGAGCAACTG
GTCATCCATGCCTCCTTTGGAGGAGTTTGGGCGCTTCGCGTTTGGGGAAA
TTTTCACCATACCAGAAATGACCTTGACACAAGAGGATCCCACGGCCCGG
GCCTGCTACTTATACGTGGCCTTAGAGCACCAAGCACGCGTCCAGGAGTT
GGATTTAATATGCGCGGCGCCGACCATCGTCGTGAATCTGATGCGGGGCA
AATCCTCCACGGCCATGAGCTACACCTACTTGACAACCCTCAAGGGTCAA
AGCTCAGAGGAATATCCAGGGCTCTTTGTCTTTCGCATCGACGCATCTCT
GTTGTCGCATGTGGAAGTCTGGCAGCTCCAGATCAAATTCTTGTTTCCCC
GGGTGGGGGAGAATTCGTTGCTGGTCAAGAAGATAAGTGTAATTGTGGAG
GACCAGGCCAAGAGACGGGGGGAGCTCAACATGAAGGCCGAGGCAGGCGC
AGGCAGGCGAGGGGTTCTCGACCGCCCCAATTCCACGGCCATTCAGACTT
TTGTTCCGCCTCCTCAGCAGCAACGACAGCAGGGCTACGGCCCGCCCCCG
CCCCCCCAGCCTTTCAATGCGGAGAGTGCCGTAATGGTGGGGCTGGTGGT
GGTGGACCAAGTTCTGGGTGTCATGACCAAGGAGATCCAGGAGAACCTTC
AGTCAACTTGTAGGGGGGTAGAAGAACGCTTGCTTGCAGATTTAAGCAGG
CTAGAGGAGAAGATGGGGCGGATTGAGGAGGTGTATGATGACATTGCTGC
GGACATTCGATTGACCTCGCTGCTGTCGGCATTGGAAGGGGCCAAAATTG
CGCGGGGCATGGCAAACGCGGAAGAAGAAGAGAGAGGAATGGAAGGAGCA
GCACAGGAGGGATTATCGGAGGAAAAGGGTGAGGACGTAGAGAGCCCAAC
GGGGGCTTGGGGGACCCCGGGCGGATTGACGCCAGATATGTATTATGGCG
TTGGTGTCGGAGTGTAA
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Synonyms
Publications