jgi.p|Nanoce1779_2|565729, mRNA_4291 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565729
Unique NamemRNA_4291
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length693
Alignment locationscaffold_10:217545..218293 +

Link to JBrowse

Properties
Property NameValue
TranscriptId565815
TrackFilteredModels2
ProteinId565729
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:217545..218293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565729gene_4291Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565729mRNA_4291-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4291CDS_4291Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4291 ID=mRNA_4291|Name=jgi.p|Nanoce1779_2|565729|organism=Nannochloropsis oceanica|type=mRNA|length=693bp
ATGGCCCCGCCGCAGCAGGATGAAGACGAGGAAGCGCGCTCTCCGCTCCC
CTTGACCGTCAACAGCCGTACGTTTAGCGTGCTGCACGAGAAGTCTGTGG
CGGTGACCAAAGTGGCCTTGTGTCCGAAAATGGACTTGATCGCCCTTTTG
GCGGGGGACGGCTCCTTGGTAGTACTTCGGACCATTTCCTGGCAGAAATT
GCACGCCTTGCCCGCGGCCGAGTTGCGGGACGAGAACCGCGTGACAGACC
TTGCATGGAGTCCAGACGGAAACATGCTGGCCTTGGGGCACGAACGTGGT
GCTATCAGCTTCTTTGACGTGGAGAAGGGGGAGCCCTCCCCTCTTCCCTT
GGGGGCCCGGCCTCCAGAAGCATTGGACCACAGCGAGGTGCTCGTCTTGG
GCTGGTTCACCCAGCATCGCGACGCTCCACGCTTATCCGCCTTGGATTGG
GAGAAGGATCAATCTCGCATCGCGGCGTCGTACTACCTTGAGCGAGACGC
TGTGTTTTTAGAAGACCTGCCTGCATTAGGGCCACAAAGTGGGAGCTTCG
CTGCGCCTAAGGACAGAAAAGAAGAGCCTGTCGGCGCCAAATTAACGGCA
GGATCTGCGTCATTGGATATCCTTGTTGCCTGCTTTAAGAGTGGATTTGG
TGCCTTCTCCGTCAGCGTCATCTACGAACGGCGGCGGCAATAG
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protein sequence of jgi.p|Nanoce1779_2|565729

>mRNA_4291-protein ID=mRNA_4291-protein|Name=jgi.p|Nanoce1779_2|565729|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MAPPQQDEDEEARSPLPLTVNSRTFSVLHEKSVAVTKVALCPKMDLIALL
AGDGSLVVLRTISWQKLHALPAAELRDENRVTDLAWSPDGNMLALGHERG
AISFFDVEKGEPSPLPLGARPPEALDHSEVLVLGWFTQHRDAPRLSALDW
EKDQSRIAASYYLERDAVFLEDLPALGPQSGSFAAPKDRKEEPVGAKLTA
GSASLDILVACFKSGFGAFSVSVIYERRRQ*
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mRNA from alignment at scaffold_10:217545..218293+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4291 ID=mRNA_4291|Name=jgi.p|Nanoce1779_2|565729|organism=Nannochloropsis oceanica|type=mRNA|length=749bp|location=Sequence derived from alignment at scaffold_10:217545..218293+ (Nannochloropsis oceanica)
ATGGCCCCGCCGCAGCAGGATGAAGACGAGGAAGCGCGCTCTCCGCTCCC
CTTGACCGTCAACAGCCGTACGTTTAGCGTGCTGCACGAGAAGTCTGTGG
CGGTGACCAAAGTGGCCTTGTGTCCGAAAATGGACTTGATCGCCCTTTTG
GCGGGGGACGGCTCCTTGGTAGTACTTCGGACCATTTCCTGGCAGAAATT
GCACGCCTTGCCCGCGGCCGAGTTGCGGGACGAGAACCGCGTGACAGACC
TTGCATGGAGTCCAGACGGAAACATGCTGGCCTTGGGGCACGAACGTGGT
GCTATCAGCTTCTTTGACGTGGAGAAGGGGGAGCCCTCCCCTCTTCCCTT
GGGGGCCCGGCCTCCAGAAGCATTGGACCACAGCGAGGTGCTCGTCTTGG
GCTGGTTCACCCAGCATCGCGACGCTCCACGCTTATCCGCCTTGGATTGG
GAGAAGGATCAATCTCGCATCGCGGCGTCGTACTACCTTGAGCGAGACGC
TGTGTTTTTAGAAGACCTGCCTGCATTAGGGCCACAAAGTGGGAGCTTCG
CTGCGCCTAAGGACAGAAAAGAAGAGCCTGTCGGCGCCAAATTAACGGCA
GGATCTGCGTCATTGGATATCCTTGTTGCCTGCTTTAAGAGTGGTAATGT
CTTAGTGTTGTCCTCGGGACTGTTTCCCTTGCTTAGTCTGCGGTTGCAGG
ATTTGGTGCCTTCTCCGTCAGCGTCATCTACGAACGGCGGCGGCAATAG
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Coding sequence (CDS) from alignment at scaffold_10:217545..218293+

>mRNA_4291 ID=mRNA_4291|Name=jgi.p|Nanoce1779_2|565729|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_10:217545..218293+ (Nannochloropsis oceanica)
ATGGCCCCGCCGCAGCAGGATGAAGACGAGGAAGCGCGCTCTCCGCTCCC
CTTGACCGTCAACAGCCGTACGTTTAGCGTGCTGCACGAGAAGTCTGTGG
CGGTGACCAAAGTGGCCTTGTGTCCGAAAATGGACTTGATCGCCCTTTTG
GCGGGGGACGGCTCCTTGGTAGTACTTCGGACCATTTCCTGGCAGAAATT
GCACGCCTTGCCCGCGGCCGAGTTGCGGGACGAGAACCGCGTGACAGACC
TTGCATGGAGTCCAGACGGAAACATGCTGGCCTTGGGGCACGAACGTGGT
GCTATCAGCTTCTTTGACGTGGAGAAGGGGGAGCCCTCCCCTCTTCCCTT
GGGGGCCCGGCCTCCAGAAGCATTGGACCACAGCGAGGTGCTCGTCTTGG
GCTGGTTCACCCAGCATCGCGACGCTCCACGCTTATCCGCCTTGGATTGG
GAGAAGGATCAATCTCGCATCGCGGCGTCGTACTACCTTGAGCGAGACGC
TGTGTTTTTAGAAGACCTGCCTGCATTAGGGCCACAAAGTGGGAGCTTCG
CTGCGCCTAAGGACAGAAAAGAAGAGCCTGTCGGCGCCAAATTAACGGCA
GGATCTGCGTCATTGGATATCCTTGTTGCCTGCTTTAAGAGTGGATTTGG
TGCCTTCTCCGTCAGCGTCATCTACGAACGGCGGCGGCAATAGATGGCCC
CGCCGCAGCAGGATGAAGACGAGGAAGCGCGCTCTCCGCTCCCCTTGACC
GTCAACAGCCGTACGTTTAGCGTGCTGCACGAGAAGTCTGTGGCGGTGAC
CAAAGTGGCCTTGTGTCCGAAAATGGACTTGATCGCCCTTTTGGCGGGGG
ACGGCTCCTTGGTAGTACTTCGGACCATTTCCTGGCAGAAATTGCACGCC
TTGCCCGCGGCCGAGTTGCGGGACGAGAACCGCGTGACAGACCTTGCATG
GAGTCCAGACGGAAACATGCTGGCCTTGGGGCACGAACGTGGTGCTATCA
GCTTCTTTGACGTGGAGAAGGGGGAGCCCTCCCCTCTTCCCTTGGGGGCC
CGGCCTCCAGAAGCATTGGACCACAGCGAGGTGCTCGTCTTGGGCTGGTT
CACCCAGCATCGCGACGCTCCACGCTTATCCGCCTTGGATTGGGAGAAGG
ATCAATCTCGCATCGCGGCGTCGTACTACCTTGAGCGAGACGCTGTGTTT
TTAGAAGACCTGCCTGCATTAGGGCCACAAAGTGGGAGCTTCGCTGCGCC
TAAGGACAGAAAAGAAGAGCCTGTCGGCGCCAAATTAACGGCAGGATCTG
CGTCATTGGATATCCTTGTTGCCTGCTTTAAGAGTGGATTTGGTGCCTTC
TCCGTCAGCGTCATCTACGAACGGCGGCGGCAATAG
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Synonyms
Publications