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Properties
| Property Name | Value |
|---|
| TranscriptId | 563450 |
| Track | FilteredModels2 |
| ProteinId | 563364 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:1058222..1060410 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_429 ID=mRNA_429|Name=jgi.p|Nanoce1779_2|563364|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp
ATGGGGAAGTCCCATTCGAGCAACAACAGTCTGAGTAGCAACAGCAGCGG
GGGAGGATCGACTGTGGGTCATGTCTTGCAAAAGGCGCAGTTCCCGCCGC
CTCCAACCCACTTCGGTTACAAACAGGAAGGCGAAGGAAGAGGAGGAGGG
GGACTAGGAGTTGGCAGAGGAACCAACATGTTTCACTCAATTCAAATCTC
GCCAGCCTCGCTGTTGCCGGCCCCTTCCTCTTCTCAACAGCAGCCGCCGC
AGCAAGCCGGCTCTGCCAACGGCGGGGGAGGCGATGCGATGCCCCCTCTT
GCCCCCAATCTCTACGCTCACCTTCATCAAGAGGGCGCCAGTAGCACCCC
CATGATCGGTTCATGCGAAGAAAAATTCATGAACGTCTTTCTCGCCGAGC
TCAATGCCTTCTTGCCCATCGCTGATAAAGACATGCTTCTCTCCAGCCTC
GCTAACCTGCGAGCTAACGGCAAGCACGCCCTGCCGCCAAGCACCCTCAT
CCCCCTCCTCGCCTCCCTCCCCCCACAAACCGCCGAGAGTTTACAAGAGG
TCCAGTTGCAAAACGCACACAATGCCATGGTTTGGGCAGGTATCGCAATT
GGAGCTATGCTCCAGGGGGAGACGGGAAACATGCAGAGGTATACGACCTT
GGCCTGGTTATCAATGAAAGAATGTTTTGATTTCCCCTCTCCAGCAACGG
TGTCGGCATATTTGATGATGGCGTTTGTGTACATGATGTTTGGAGAGTTG
GATCGGTTCAGGCGATATTGCTCTATGGCGGAAGGGATCGCTAGTGCCCT
TGGACCGACCTTATCGAACGAGATGGAGGTGACGTTGCTCTATGTGCGGG
TGGGCCAAAACCCAGATGTCCGCGTCTTGGAGTCCCAATGGGAAGAAATG
TCGACCATGGATGTCCCTACCGAATGCGCGCACATGCAAATGATCTACCT
CGTCACACGTGCCAAGCTCTACCTCCTTCATAACCGCTACCGGGGCGACG
CTTGTGAACGCCAGGGGCTCCCCCGTATCCCTATCGATTTTGACCGTGTC
CTGCCCGACTTGGAAATGGCCGACTGCCTCCTATCCGTGGGTCCTGCTGC
CTCTGCTGCTACTGCTGTTGGTTTTGTGCGGAGTATGCGGGCAATATTCA
ACTACATCAAGAGTCGGGGGAAGGATACCGAGGAGGCGTTGGCCACGATG
CAGCCGGTGCTTAATCACGCAATGAGGTGCCCGGGCATGGTGAAGATCTT
GCCAAACTTTCATTTTCTCCATGTCATGGCGATGCTGTTGTTTGTGGCTG
GAAGGAAGGAGACTTATGAGACGGTGCAGGGACTGACGAGTACTAGCTGG
GGGACTTGCGCGAGTGTGCCGCCGTGGGGGAGAAATTTGGATGATTTGTG
CACTCACCCTCTGTGTGCAGCGGCCTTATTAACGACGCATGAGGGACGAC
GACGACGGTTGGCGAGCATGAGTGCGGTCGAGGTTGGCAATGGAGGAGGG
AAACAGCAGGAACCAGGGCAATTGCTCGTGGCTCCCAAAGAGGAGATGGC
AGGCGTGTTGGAGGAGTTGAGCTTGGAGGAAATAGAAGGCATGTTTCTCG
GTGAGTCTGACTTTTCGACGCACGAGGTGTTCTAG back to topprotein sequence of jgi.p|Nanoce1779_2|563364 >mRNA_429-protein ID=mRNA_429-protein|Name=jgi.p|Nanoce1779_2|563364|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MGKSHSSNNSLSSNSSGGGSTVGHVLQKAQFPPPPTHFGYKQEGEGRGGG
GLGVGRGTNMFHSIQISPASLLPAPSSSQQQPPQQAGSANGGGGDAMPPL
APNLYAHLHQEGASSTPMIGSCEEKFMNVFLAELNAFLPIADKDMLLSSL
ANLRANGKHALPPSTLIPLLASLPPQTAESLQEVQLQNAHNAMVWAGIAI
GAMLQGETGNMQRYTTLAWLSMKECFDFPSPATVSAYLMMAFVYMMFGEL
DRFRRYCSMAEGIASALGPTLSNEMEVTLLYVRVGQNPDVRVLESQWEEM
STMDVPTECAHMQMIYLVTRAKLYLLHNRYRGDACERQGLPRIPIDFDRV
LPDLEMADCLLSVGPAASAATAVGFVRSMRAIFNYIKSRGKDTEEALATM
QPVLNHAMRCPGMVKILPNFHFLHVMAMLLFVAGRKETYETVQGLTSTSW
GTCASVPPWGRNLDDLCTHPLCAAALLTTHEGRRRRLASMSAVEVGNGGG
KQQEPGQLLVAPKEEMAGVLEELSLEEIEGMFLGESDFSTHEVF* back to topmRNA from alignment at scaffold_3:1058222..1060410- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_429 ID=mRNA_429|Name=jgi.p|Nanoce1779_2|563364|organism=Nannochloropsis oceanica|type=mRNA|length=2189bp|location=Sequence derived from alignment at scaffold_3:1058222..1060410- (Nannochloropsis oceanica)
ATGGGGAAGTCCCATTCGAGCAACAACAGTCTGAGTAGCAACAGCAGCGG
GGGAGGATCGACTGTGGGTCATGTCTTGCAAAAGGCGCAGTTCCCGCCGC
CTCCAACCCACTTCGGTTACAAACAGGAAGGCGAAGGAAGAGGAGGAGGG
GGACTAGGAGTTGGCAGAGGAACCAACATGTTTCACTCAATTCAAATCTC
GCCAGCCTCGCTGTTGCCGGCCCCTTCCTCTTCTCAACAGCAGCCGCCGC
AGCAAGCCGGCTCTGCCAACGGCGGGGGAGGCGATGCGATGCCCCCTCTT
GCCCCCAATCTCTACGCTCACCTTCATCAAGAGGGCGCCAGTAGCACCCC
CATGATCGGTTCATGCGAAGAAAAATTCATGAACGTCTTTCTCGCCGAGC
TCAATGCCTTCTTGCCCATCGCTGATAAAGACATGCTTCTCTCCAGCCTC
GCTAACCTGCGAGCTAACGGCAAGCACGCCCTGCCGCCAAGCACCCTCAT
CCCCCTCCTCGCCTCCCTCCCCCCACAAACCGCCGAGAGTTTACAAGAGG
TCCAGTTGCAAAACGCACACAATGCCATGGTTTGGGCAGGTATCGCAATT
GGAGCTATGCTCCAGGGGGAGACGGGAAACATGCAGAGGTATACGACCTT
GGCCTGGTTATCAATGAAAGAATGTTTTGATTTCCCCTCTCCAGCAACGG
TGTCGGCATATTTGATGATGGCGTTTGTGTACATGATGTTTGGAGAGTTG
GATCGGTTCAGGCGATATTGCTCTATGGCGGAAGGGATCGCTAGTGCCCT
TGGACCGACCTTATCGAACGAGATGGAGGTGACGTTGCTCTATGTGCGGG
TGGGCCAAAACCCAGATGGTGAGTAAGAATAGTAGAGCACGCAGCCGCCG
ACATTTCTTCTGGTTCTCTCTACTTCTCTATTTCATTTTCCGGGGCGTCT
CCCTGTACACACGCACACCTCGTGTTGGTTGTCTGTATTTTTGTATTTGT
CACTCTACCTTCCCTTTCCTCCCTCTCACCCAATACAGTCCGCGTCTTGG
AGTCCCAATGGGAAGAAATGTCGACCATGGATGTCCCTACCGAATGCGCG
CACATGCAAATGATCTACCTCGTCACACGTGCCAAGCTCTACCTCCTTCA
TAACCGCTACCGGGGCGACGCTTGTGAACGCCAGGGGCTCCCCCGTATCC
CTATCGATTTTGACCGTGTCCTGCCCGACTTGGAAATGGCCGACTGCCTC
CTATCCGTGGGTCCTGCTGCCTCTGCTGCTACTGCTGTTGGTTTTGTGCG
GAGTATGCGGGCAATATTCAACTACATCAAGAGTCGGGGGAAGGATACCG
AGGAGGCGTTGGCCACGATGCAGCCGGTGCTTAATCACGCAATGAGGTGC
CCGGGCATGGTGAAGATCTTGCCAAACTTTCATTTTCTCCATGTCATGGC
GATGCTGTTGTTTGTGGCTGGAAGGAAGGAGACTTATGAGACGGTGCAGG
GACTGACGAGTACTAGCTGGGGGACTTGCGCGAGTGTGCCGCCGTGGGGG
AGAAATTTGGATGATTTGTGCACTCACCCTCTGTGTGCAGCGGCCTTATT
AACGACGCATGAGGGACGACGACGACGGTTGGCGAGCATGAGTGCGGTCG
AGGTTGGCAATGGAGGAGGGAAAGTAGGAGGAGGGTTTGATCAAGAACAT
TTTACAGATTTCTTGGCGCCGCAGCAAGCAGTACTGCAGCAGCTGCAGCA
ACAGCAGCTGCAGCAACTACAACAGCAGCAGCAACAGCACCAGCAACAGC
GACAGCACCTTCCCCTGTCACAAACAGGTCTCCAGCAACGATTTAACCAG
CATTTCCACCAGCAGCACCAACACCACCAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAGGAACAG
GAACAGGAACAGGAACAGGAACAGGAACAGGAACAGGAACCTCACCAGGT
ACCACAGCAGCAGGAACCAGGGCAATTGCTCGTGGCTCCCAAAGAGGAGA
TGGCAGGCGTGTTGGAGGAGTTGAGCTTGGAGGAAATAGAAGGCATGTTT
CTCGGTGAGTCTGACTTTTCGACGCACGAGGTGTTCTAG back to topCoding sequence (CDS) from alignment at scaffold_3:1058222..1060410- >mRNA_429 ID=mRNA_429|Name=jgi.p|Nanoce1779_2|563364|organism=Nannochloropsis oceanica|type=CDS|length=4905bp|location=Sequence derived from alignment at scaffold_3:1058222..1060410- (Nannochloropsis oceanica)
CAGCAGGAACCAGGGCAATTGCTCGTGGCTCCCAAAGAGGAGATGGCAGG
CGTGTTGGAGGAGTTGAGCTTGGAGGAAATAGAAGGCATGTTTCTCGGTG
AGTCTGACTTTTCGACGCACGAGGTGTTCTAGTCCGCGTCTTGGAGTCCC
AATGGGAAGAAATGTCGACCATGGATGTCCCTACCGAATGCGCGCACATG
CAAATGATCTACCTCGTCACACGTGCCAAGCTCTACCTCCTTCATAACCG
CTACCGGGGCGACGCTTGTGAACGCCAGGGGCTCCCCCGTATCCCTATCG
ATTTTGACCGTGTCCTGCCCGACTTGGAAATGGCCGACTGCCTCCTATCC
GTGGGTCCTGCTGCCTCTGCTGCTACTGCTGTTGGTTTTGTGCGGAGTAT
GCGGGCAATATTCAACTACATCAAGAGTCGGGGGAAGGATACCGAGGAGG
CGTTGGCCACGATGCAGCCGGTGCTTAATCACGCAATGAGGTGCCCGGGC
ATGGTGAAGATCTTGCCAAACTTTCATTTTCTCCATGTCATGGCGATGCT
GTTGTTTGTGGCTGGAAGGAAGGAGACTTATGAGACGGTGCAGGGACTGA
CGAGTACTAGCTGGGGGACTTGCGCGAGTGTGCCGCCGTGGGGGAGAAAT
TTGGATGATTTGTGCACTCACCCTCTGTGTGCAGCGGCCTTATTAACGAC
GCATGAGGGACGACGACGACGGTTGGCGAGCATGAGTGCGGTCGAGGTTG
GCAATGGAGGAGGGAAAATGGGGAAGTCCCATTCGAGCAACAACAGTCTG
AGTAGCAACAGCAGCGGGGGAGGATCGACTGTGGGTCATGTCTTGCAAAA
GGCGCAGTTCCCGCCGCCTCCAACCCACTTCGGTTACAAACAGGAAGGCG
AAGGAAGAGGAGGAGGGGGACTAGGAGTTGGCAGAGGAACCAACATGTTT
CACTCAATTCAAATCTCGCCAGCCTCGCTGTTGCCGGCCCCTTCCTCTTC
TCAACAGCAGCCGCCGCAGCAAGCCGGCTCTGCCAACGGCGGGGGAGGCG
ATGCGATGCCCCCTCTTGCCCCCAATCTCTACGCTCACCTTCATCAAGAG
GGCGCCAGTAGCACCCCCATGATCGGTTCATGCGAAGAAAAATTCATGAA
CGTCTTTCTCGCCGAGCTCAATGCCTTCTTGCCCATCGCTGATAAAGACA
TGCTTCTCTCCAGCCTCGCTAACCTGCGAGCTAACGGCAAGCACGCCCTG
CCGCCAAGCACCCTCATCCCCCTCCTCGCCTCCCTCCCCCCACAAACCGC
CGAGAGTTTACAAGAGGTCCAGTTGCAAAACGCACACAATGCCATGGTTT
GGGCAGGTATCGCAATTGGAGCTATGCTCCAGGGGGAGACGGGAAACATG
CAGAGGTATACGACCTTGGCCTGGTTATCAATGAAAGAATGTTTTGATTT
CCCCTCTCCAGCAACGGTGTCGGCATATTTGATGATGGCGTTTGTGTACA
TGATGTTTGGAGAGTTGGATCGGTTCAGGCGATATTGCTCTATGGCGGAA
GGGATCGCTAGTGCCCTTGGACCGACCTTATCGAACGAGATGGAGGTGAC
GTTGCTCTATGTGCGGGTGGGCCAAAACCCAGATGCAGCAGGAACCAGGG
CAATTGCTCGTGGCTCCCAAAGAGGAGATGGCAGGCGTGTTGGAGGAGTT
GAGCTTGGAGGAAATAGAAGGCATGTTTCTCGGTGAGTCTGACTTTTCGA
CGCACGAGGTGTTCTAGTCCGCGTCTTGGAGTCCCAATGGGAAGAAATGT
CGACCATGGATGTCCCTACCGAATGCGCGCACATGCAAATGATCTACCTC
GTCACACGTGCCAAGCTCTACCTCCTTCATAACCGCTACCGGGGCGACGC
TTGTGAACGCCAGGGGCTCCCCCGTATCCCTATCGATTTTGACCGTGTCC
TGCCCGACTTGGAAATGGCCGACTGCCTCCTATCCGTGGGTCCTGCTGCC
TCTGCTGCTACTGCTGTTGGTTTTGTGCGGAGTATGCGGGCAATATTCAA
CTACATCAAGAGTCGGGGGAAGGATACCGAGGAGGCGTTGGCCACGATGC
AGCCGGTGCTTAATCACGCAATGAGGTGCCCGGGCATGGTGAAGATCTTG
CCAAACTTTCATTTTCTCCATGTCATGGCGATGCTGTTGTTTGTGGCTGG
AAGGAAGGAGACTTATGAGACGGTGCAGGGACTGACGAGTACTAGCTGGG
GGACTTGCGCGAGTGTGCCGCCGTGGGGGAGAAATTTGGATGATTTGTGC
ACTCACCCTCTGTGTGCAGCGGCCTTATTAACGACGCATGAGGGACGACG
ACGACGGTTGGCGAGCATGAGTGCGGTCGAGGTTGGCAATGGAGGAGGGA
AAATGGGGAAGTCCCATTCGAGCAACAACAGTCTGAGTAGCAACAGCAGC
GGGGGAGGATCGACTGTGGGTCATGTCTTGCAAAAGGCGCAGTTCCCGCC
GCCTCCAACCCACTTCGGTTACAAACAGGAAGGCGAAGGAAGAGGAGGAG
GGGGACTAGGAGTTGGCAGAGGAACCAACATGTTTCACTCAATTCAAATC
TCGCCAGCCTCGCTGTTGCCGGCCCCTTCCTCTTCTCAACAGCAGCCGCC
GCAGCAAGCCGGCTCTGCCAACGGCGGGGGAGGCGATGCGATGCCCCCTC
TTGCCCCCAATCTCTACGCTCACCTTCATCAAGAGGGCGCCAGTAGCACC
CCCATGATCGGTTCATGCGAAGAAAAATTCATGAACGTCTTTCTCGCCGA
GCTCAATGCCTTCTTGCCCATCGCTGATAAAGACATGCTTCTCTCCAGCC
TCGCTAACCTGCGAGCTAACGGCAAGCACGCCCTGCCGCCAAGCACCCTC
ATCCCCCTCCTCGCCTCCCTCCCCCCACAAACCGCCGAGAGTTTACAAGA
GGTCCAGTTGCAAAACGCACACAATGCCATGGTTTGGGCAGGTATCGCAA
TTGGAGCTATGCTCCAGGGGGAGACGGGAAACATGCAGAGGTATACGACC
TTGGCCTGGTTATCAATGAAAGAATGTTTTGATTTCCCCTCTCCAGCAAC
GGTGTCGGCATATTTGATGATGGCGTTTGTGTACATGATGTTTGGAGAGT
TGGATCGGTTCAGGCGATATTGCTCTATGGCGGAAGGGATCGCTAGTGCC
CTTGGACCGACCTTATCGAACGAGATGGAGGTGACGTTGCTCTATGTGCG
GGTGGGCCAAAACCCAGATGCAGCAGGAACCAGGGCAATTGCTCGTGGCT
CCCAAAGAGGAGATGGCAGGCGTGTTGGAGGAGTTGAGCTTGGAGGAAAT
AGAAGGCATGTTTCTCGGTGAGTCTGACTTTTCGACGCACGAGGTGTTCT
AGTCCGCGTCTTGGAGTCCCAATGGGAAGAAATGTCGACCATGGATGTCC
CTACCGAATGCGCGCACATGCAAATGATCTACCTCGTCACACGTGCCAAG
CTCTACCTCCTTCATAACCGCTACCGGGGCGACGCTTGTGAACGCCAGGG
GCTCCCCCGTATCCCTATCGATTTTGACCGTGTCCTGCCCGACTTGGAAA
TGGCCGACTGCCTCCTATCCGTGGGTCCTGCTGCCTCTGCTGCTACTGCT
GTTGGTTTTGTGCGGAGTATGCGGGCAATATTCAACTACATCAAGAGTCG
GGGGAAGGATACCGAGGAGGCGTTGGCCACGATGCAGCCGGTGCTTAATC
ACGCAATGAGGTGCCCGGGCATGGTGAAGATCTTGCCAAACTTTCATTTT
CTCCATGTCATGGCGATGCTGTTGTTTGTGGCTGGAAGGAAGGAGACTTA
TGAGACGGTGCAGGGACTGACGAGTACTAGCTGGGGGACTTGCGCGAGTG
TGCCGCCGTGGGGGAGAAATTTGGATGATTTGTGCACTCACCCTCTGTGT
GCAGCGGCCTTATTAACGACGCATGAGGGACGACGACGACGGTTGGCGAG
CATGAGTGCGGTCGAGGTTGGCAATGGAGGAGGGAAAATGGGGAAGTCCC
ATTCGAGCAACAACAGTCTGAGTAGCAACAGCAGCGGGGGAGGATCGACT
GTGGGTCATGTCTTGCAAAAGGCGCAGTTCCCGCCGCCTCCAACCCACTT
CGGTTACAAACAGGAAGGCGAAGGAAGAGGAGGAGGGGGACTAGGAGTTG
GCAGAGGAACCAACATGTTTCACTCAATTCAAATCTCGCCAGCCTCGCTG
TTGCCGGCCCCTTCCTCTTCTCAACAGCAGCCGCCGCAGCAAGCCGGCTC
TGCCAACGGCGGGGGAGGCGATGCGATGCCCCCTCTTGCCCCCAATCTCT
ACGCTCACCTTCATCAAGAGGGCGCCAGTAGCACCCCCATGATCGGTTCA
TGCGAAGAAAAATTCATGAACGTCTTTCTCGCCGAGCTCAATGCCTTCTT
GCCCATCGCTGATAAAGACATGCTTCTCTCCAGCCTCGCTAACCTGCGAG
CTAACGGCAAGCACGCCCTGCCGCCAAGCACCCTCATCCCCCTCCTCGCC
TCCCTCCCCCCACAAACCGCCGAGAGTTTACAAGAGGTCCAGTTGCAAAA
CGCACACAATGCCATGGTTTGGGCAGGTATCGCAATTGGAGCTATGCTCC
AGGGGGAGACGGGAAACATGCAGAGGTATACGACCTTGGCCTGGTTATCA
ATGAAAGAATGTTTTGATTTCCCCTCTCCAGCAACGGTGTCGGCATATTT
GATGATGGCGTTTGTGTACATGATGTTTGGAGAGTTGGATCGGTTCAGGC
GATATTGCTCTATGGCGGAAGGGATCGCTAGTGCCCTTGGACCGACCTTA
TCGAACGAGATGGAGGTGACGTTGCTCTATGTGCGGGTGGGCCAAAACCC
AGATG back to top
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