Properties
| Property Name | Value |
|---|
| TranscriptId | 588698 |
| Track | FilteredModels2 |
| ProteinId | 588612 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:196645..198400 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4286 ID=mRNA_4286|Name=jgi.p|Nanoce1779_2|588612|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp
ACAGCATGCAGGCAGGCAACACCAAACTCTATATTTAACATGGTGCCGTT
GACTGCCGGAGGCGCCGCGACGCAGCAGCGACATGTGCAGCAAAATTCTA
CCAGCATCTCTTTAAACTTCCAGCAGCAGCAATCAGTGGTCGCCCCAGTC
CCCCCCCACTCACTCCAAGCTGCCAAGACGAAGCTCGGACACGTCCTTTA
TGCCCTCGAAGATCTACGGCTTGATTACTTGCACTCTTCCGTTGGCGGTC
TCCCATTGCCCACCACCCACCAGCTCGAGGCTTTGGCTCGTCTCCGGCCC
AGTTCGTTGAATGTTTGCCCGGACGGCGTCATCCCTACTTGGTCCCACAT
CCAGACCACGACTTTTGGCAACGTCTTCCTAGAATGCATGTGGAAAGCCA
GTCATGCCATAGGACTTCCCTTGGACGCGTACTTGCGAACAGCAACGAAC
GAGCAAGGAGGAAAGGAAGACCAGGATCACGGCCCCTTGCCACCCTTGGC
GATGAATGTGGTGAAGGCTTTCAACCTCGGCCTTCCAACCTATCAGATCG
CGAAGCAATGGGCCATCGATGAATCAAATGTGTTGATCCACTTGCTGCGA
GCCGAAGATAAGGGAAATCCCATTCAGTGGTCTCGCATGACTATCTCCGC
TTGCTTGAAGGATGCTGTCGTGATCGCTGCTGAGGTTGCCCGGCATCTAG
AGAAGGCAGCGATGGAGCAACGGGGATTGGTGAGAGGGGTAGCGGGACAA
CGAAAGGAGCCACTTTCGACGCACTTCCCCCTCCCTGTGCTAATGCAGCT
CTTGCCTGATTGGCGTCCTGTGGATGTGCTTGCGGGCATTTGCCTGGTGC
GGCATCACCAGCAGACTCGCCTTTCCGCCCGTCGTCGTCGTGTGTCGCCT
GAGGGAGCAGCCGCCGCCACCAGCATCCCTGATGCTGTCCCTGCCATGGG
CAAAAAGAGGCAAATGAAGATAAATGCAGTGACATCTGGTAGTCTGGTTC
GTGGTGTCAACCATCCAGTAGAGAAGTTGGTGGTGTTTAACGATGAAAAT
CAGTGCCTGGGAGCGACTGCCTACGCAAGCAGCAGCAAGGAGGCCACCAA
GCCCATGCAACAGCAGCGGCAGCATCAGCGGTACCAGCAGCAGCATCAGC
GGCACCAGCAGCAGCACCAGCAGCTCCAGCAACAGCCCCCTTCGAATCCA
TCAGCATCCGTCGTGCCCCTTGCTACCCGCGTCCTGAATCTCTTGCAAGT
CCACGCCGCTGACGGCCTCAGTTCCGATGAGTGCTGCAAGCTCCTGGCTA
CTGCTGATCGATGCCACCACCTCCGTGTGCTTGACAGCAAGACATGGGCG
GCGGTAGAAGCGTGTTTGGGAGAGCTGGAGGAGGCTTATGTAGCGTACCG
TGGGGCAGACGGGAAATTTAAATTGCTCTAGCCAAAGATTTTGTGTAAAC
AACAAAAAACACATGTAC back to topprotein sequence of jgi.p|Nanoce1779_2|588612 >mRNA_4286-protein ID=mRNA_4286-protein|Name=jgi.p|Nanoce1779_2|588612|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MVPLTAGGAATQQRHVQQNSTSISLNFQQQQSVVAPVPPHSLQAAKTKLG
HVLYALEDLRLDYLHSSVGGLPLPTTHQLEALARLRPSSLNVCPDGVIPT
WSHIQTTTFGNVFLECMWKASHAIGLPLDAYLRTATNEQGGKEDQDHGPL
PPLAMNVVKAFNLGLPTYQIAKQWAIDESNVLIHLLRAEDKGNPIQWSRM
TISACLKDAVVIAAEVARHLEKAAMEQRGLVRGVAGQRKEPLSTHFPLPV
LMQLLPDWRPVDVLAGICLVRHHQQTRLSARRRRVSPEGAAAATSIPDAV
PAMGKKRQMKINAVTSGSLVRGVNHPVEKLVVFNDENQCLGATAYASSSK
EATKPMQQQRQHQRYQQQHQRHQQQHQQLQQQPPSNPSASVVPLATRVLN
LLQVHAADGLSSDECCKLLATADRCHHLRVLDSKTWAAVEACLGELEEAY
VAYRGADGKFKLL* back to topmRNA from alignment at scaffold_10:196645..198400- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4286 ID=mRNA_4286|Name=jgi.p|Nanoce1779_2|588612|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp|location=Sequence derived from alignment at scaffold_10:196645..198400- (Nannochloropsis oceanica)
ACAGCATGCAGGCAGGCAACACCAAACTCTATATTTAACATGGTGCCGTT
GACTGCCGGAGGCGCCGCGACGCAGCAGCGACATGTGCAGCAAAATTCTA
CCAGCATCTCTTTAAACTTCCAGCAGCAGCAATCAGTGGTCGCCCCAGTC
CCCCCCCACTCACTCCAAGCTGCCAAGACGAAGCTCGGACACGTCCTTTA
TGCCCTCGAAGATCTACGGTACGTGTATATGGACGGAGTGCGCGCAAAGT
GTCAGTGTTTGCAGGCAGTTTTACACCAGCAACTCTCTAGGTGCCTGTCC
AACATGATGATCCTCATATCTGGTGCGCTTCCAACCGAACATCTCTTTCC
GCCCCGTCAATTGCCAGGCTTGATTACTTGCACTCTTCCGTTGGCGGTCT
CCCATTGCCCACCACCCACCAGCTCGAGGCTTTGGCTCGTCTCCGGCCCA
GTTCGTTGAATGTTTGCCCGGACGGCGTCATCCCTACTTGGTCCCACATC
CAGACCACGGTACGTGCATGAGGGCGGTCGATCGCGGGATGATTGCCTTG
CAAGACTTCTCTCATGAAATCGTTTTTCCTTTTTCATCTCTCTATAATTA
CTCAAAACTTTTCCCCATCACCAACTGCATAAATATCGGCCTATCTAGAC
TTTTGGCAACGTCTTCCTAGAATGCATGTGGAAAGCCAGTCATGCCATAG
GACTTCCCTTGGACGCGTACTTGCGAACAGCAACGAACGAGCAAGGAGGA
AAGGAAGACCAGGATCACGGCCCCTTGCCACCCTTGGCGATGAATGTGGT
GAAGGCTTTCAACCTCGGCCTTCCAACCTATCAGATCGCGAAGCAATGGG
CCATCGATGAATCAAATGTGTTGATCCACTTGCTGCGAGCCGAAGATAAG
GGAAATCCCATTCAGTGGTCTCGCATGACTATCTCCGCTTGCTTGAAGGA
TGCTGTCGTGATCGCTGCTGAGGTTGCCCGGCATCTAGAGAAGGCAGCGA
TGGAGCAACGGGGATTGGTGAGAGGGGTAGCGGGACAACGAAAGGAGCCA
CTTTCGACGCACTTCCCCCTCCCTGTGCTAATGCAGCTCTTGCCTGATTG
GCGTCCTGTGGATGTGCTTGCGGGCATTTGCCTGGTGCGGCATCACCAGC
AGACTCGCCTTTCCGCCCGTCGTCGTCGTGTGTCGCCTGAGGGAGCAGCC
GCCGCCACCAGCATCCCTGATGCTGTCCCTGCCATGGGCAAAAAGAGGCA
AATGAAGATAAATGCAGTGACATCTGGTAGTCTGGTTCGTGGTGTCAACC
ATCCAGTAGAGAAGTTGGTGGTGTTTAACGATGAAAATCAGTGCCTGGGA
GCGACTGCCTACGCAAGCAGCAGCAAGGAGGCCACCAAGCCCATGCAACA
GCAGCGGCAGCATCAGCGGTACCAGCAGCAGCATCAGCGGCACCAGCAGC
AGCACCAGCAGCTCCAGCAACAGCCCCCTTCGAATCCATCAGCATCCGTC
GTGCCCCTTGCTACCCGCGTCCTGAATCTCTTGCAAGTCCACGCCGCTGA
CGGCCTCAGTTCCGATGAGTGCTGCAAGCTCCTGGCTACTGCTGATCGAT
GCCACCACCTCCGTGTGCTTGACAGCAAGACATGGGCGGCGGTAGAAGCG
TGTTTGGGAGAGCTGGAGGAGGCTTATGTAGCGTACCGTGGGGCAGACGG
GAAATTTAAATTGCTCTAGCCAAAGATTTTGTGTAAACAACAAAAAACAC
ATGTAC back to topCoding sequence (CDS) from alignment at scaffold_10:196645..198400- >mRNA_4286 ID=mRNA_4286|Name=jgi.p|Nanoce1779_2|588612|organism=Nannochloropsis oceanica|type=CDS|length=4176bp|location=Sequence derived from alignment at scaffold_10:196645..198400- (Nannochloropsis oceanica)
ACTTTTGGCAACGTCTTCCTAGAATGCATGTGGAAAGCCAGTCATGCCAT
AGGACTTCCCTTGGACGCGTACTTGCGAACAGCAACGAACGAGCAAGGAG
GAAAGGAAGACCAGGATCACGGCCCCTTGCCACCCTTGGCGATGAATGTG
GTGAAGGCTTTCAACCTCGGCCTTCCAACCTATCAGATCGCGAAGCAATG
GGCCATCGATGAATCAAATGTGTTGATCCACTTGCTGCGAGCCGAAGATA
AGGGAAATCCCATTCAGTGGTCTCGCATGACTATCTCCGCTTGCTTGAAG
GATGCTGTCGTGATCGCTGCTGAGGTTGCCCGGCATCTAGAGAAGGCAGC
GATGGAGCAACGGGGATTGGTGAGAGGGGTAGCGGGACAACGAAAGGAGC
CACTTTCGACGCACTTCCCCCTCCCTGTGCTAATGCAGCTCTTGCCTGAT
TGGCGTCCTGTGGATGTGCTTGCGGGCATTTGCCTGGTGCGGCATCACCA
GCAGACTCGCCTTTCCGCCCGTCGTCGTCGTGTGTCGCCTGAGGGAGCAG
CCGCCGCCACCAGCATCCCTGATGCTGTCCCTGCCATGGGCAAAAAGAGG
CAAATGAAGATAAATGCAGTGACATCTGGTAGTCTGGTTCGTGGTGTCAA
CCATCCAGTAGAGAAGTTGGTGGTGTTTAACGATGAAAATCAGTGCCTGG
GAGCGACTGCCTACGCAAGCAGCAGCAAGGAGGCCACCAAGCCCATGCAA
CAGCAGCGGCAGCATCAGCGGTACCAGCAGCAGCATCAGCGGCACCAGCA
GCAGCACCAGCAGCTCCAGCAACAGCCCCCTTCGAATCCATCAGCATCCG
TCGTGCCCCTTGCTACCCGCGTCCTGAATCTCTTGCAAGTCCACGCCGCT
GACGGCCTCAGTTCCGATGAGTGCTGCAAGCTCCTGGCTACTGCTGATCG
ATGCCACCACCTCCGTGTGCTTGACAGCAAGACATGGGCGGCGGTAGAAG
CGTGTTTGGGAGAGCTGGAGGAGGCTTATGTAGCGTACCGTGGGGCAGAC
GGGAAATTTAAATTGCTCTAGGCTTGATTACTTGCACTCTTCCGTTGGCG
GTCTCCCATTGCCCACCACCCACCAGCTCGAGGCTTTGGCTCGTCTCCGG
CCCAGTTCGTTGAATGTTTGCCCGGACGGCGTCATCCCTACTTGGTCCCA
CATCCAGACCACGATGGTGCCGTTGACTGCCGGAGGCGCCGCGACGCAGC
AGCGACATGTGCAGCAAAATTCTACCAGCATCTCTTTAAACTTCCAGCAG
CAGCAATCAGTGGTCGCCCCAGTCCCCCCCCACTCACTCCAAGCTGCCAA
GACGAAGCTCGGACACGTCCTTTATGCCCTCGAAGATCTACGACTTTTGG
CAACGTCTTCCTAGAATGCATGTGGAAAGCCAGTCATGCCATAGGACTTC
CCTTGGACGCGTACTTGCGAACAGCAACGAACGAGCAAGGAGGAAAGGAA
GACCAGGATCACGGCCCCTTGCCACCCTTGGCGATGAATGTGGTGAAGGC
TTTCAACCTCGGCCTTCCAACCTATCAGATCGCGAAGCAATGGGCCATCG
ATGAATCAAATGTGTTGATCCACTTGCTGCGAGCCGAAGATAAGGGAAAT
CCCATTCAGTGGTCTCGCATGACTATCTCCGCTTGCTTGAAGGATGCTGT
CGTGATCGCTGCTGAGGTTGCCCGGCATCTAGAGAAGGCAGCGATGGAGC
AACGGGGATTGGTGAGAGGGGTAGCGGGACAACGAAAGGAGCCACTTTCG
ACGCACTTCCCCCTCCCTGTGCTAATGCAGCTCTTGCCTGATTGGCGTCC
TGTGGATGTGCTTGCGGGCATTTGCCTGGTGCGGCATCACCAGCAGACTC
GCCTTTCCGCCCGTCGTCGTCGTGTGTCGCCTGAGGGAGCAGCCGCCGCC
ACCAGCATCCCTGATGCTGTCCCTGCCATGGGCAAAAAGAGGCAAATGAA
GATAAATGCAGTGACATCTGGTAGTCTGGTTCGTGGTGTCAACCATCCAG
TAGAGAAGTTGGTGGTGTTTAACGATGAAAATCAGTGCCTGGGAGCGACT
GCCTACGCAAGCAGCAGCAAGGAGGCCACCAAGCCCATGCAACAGCAGCG
GCAGCATCAGCGGTACCAGCAGCAGCATCAGCGGCACCAGCAGCAGCACC
AGCAGCTCCAGCAACAGCCCCCTTCGAATCCATCAGCATCCGTCGTGCCC
CTTGCTACCCGCGTCCTGAATCTCTTGCAAGTCCACGCCGCTGACGGCCT
CAGTTCCGATGAGTGCTGCAAGCTCCTGGCTACTGCTGATCGATGCCACC
ACCTCCGTGTGCTTGACAGCAAGACATGGGCGGCGGTAGAAGCGTGTTTG
GGAGAGCTGGAGGAGGCTTATGTAGCGTACCGTGGGGCAGACGGGAAATT
TAAATTGCTCTAGGCTTGATTACTTGCACTCTTCCGTTGGCGGTCTCCCA
TTGCCCACCACCCACCAGCTCGAGGCTTTGGCTCGTCTCCGGCCCAGTTC
GTTGAATGTTTGCCCGGACGGCGTCATCCCTACTTGGTCCCACATCCAGA
CCACGATGGTGCCGTTGACTGCCGGAGGCGCCGCGACGCAGCAGCGACAT
GTGCAGCAAAATTCTACCAGCATCTCTTTAAACTTCCAGCAGCAGCAATC
AGTGGTCGCCCCAGTCCCCCCCCACTCACTCCAAGCTGCCAAGACGAAGC
TCGGACACGTCCTTTATGCCCTCGAAGATCTACGACTTTTGGCAACGTCT
TCCTAGAATGCATGTGGAAAGCCAGTCATGCCATAGGACTTCCCTTGGAC
GCGTACTTGCGAACAGCAACGAACGAGCAAGGAGGAAAGGAAGACCAGGA
TCACGGCCCCTTGCCACCCTTGGCGATGAATGTGGTGAAGGCTTTCAACC
TCGGCCTTCCAACCTATCAGATCGCGAAGCAATGGGCCATCGATGAATCA
AATGTGTTGATCCACTTGCTGCGAGCCGAAGATAAGGGAAATCCCATTCA
GTGGTCTCGCATGACTATCTCCGCTTGCTTGAAGGATGCTGTCGTGATCG
CTGCTGAGGTTGCCCGGCATCTAGAGAAGGCAGCGATGGAGCAACGGGGA
TTGGTGAGAGGGGTAGCGGGACAACGAAAGGAGCCACTTTCGACGCACTT
CCCCCTCCCTGTGCTAATGCAGCTCTTGCCTGATTGGCGTCCTGTGGATG
TGCTTGCGGGCATTTGCCTGGTGCGGCATCACCAGCAGACTCGCCTTTCC
GCCCGTCGTCGTCGTGTGTCGCCTGAGGGAGCAGCCGCCGCCACCAGCAT
CCCTGATGCTGTCCCTGCCATGGGCAAAAAGAGGCAAATGAAGATAAATG
CAGTGACATCTGGTAGTCTGGTTCGTGGTGTCAACCATCCAGTAGAGAAG
TTGGTGGTGTTTAACGATGAAAATCAGTGCCTGGGAGCGACTGCCTACGC
AAGCAGCAGCAAGGAGGCCACCAAGCCCATGCAACAGCAGCGGCAGCATC
AGCGGTACCAGCAGCAGCATCAGCGGCACCAGCAGCAGCACCAGCAGCTC
CAGCAACAGCCCCCTTCGAATCCATCAGCATCCGTCGTGCCCCTTGCTAC
CCGCGTCCTGAATCTCTTGCAAGTCCACGCCGCTGACGGCCTCAGTTCCG
ATGAGTGCTGCAAGCTCCTGGCTACTGCTGATCGATGCCACCACCTCCGT
GTGCTTGACAGCAAGACATGGGCGGCGGTAGAAGCGTGTTTGGGAGAGCT
GGAGGAGGCTTATGTAGCGTACCGTGGGGCAGACGGGAAATTTAAATTGC
TCTAGGCTTGATTACTTGCACTCTTCCGTTGGCGGTCTCCCATTGCCCAC
CACCCACCAGCTCGAGGCTTTGGCTCGTCTCCGGCCCAGTTCGTTGAATG
TTTGCCCGGACGGCGTCATCCCTACTTGGTCCCACATCCAGACCACGATG
GTGCCGTTGACTGCCGGAGGCGCCGCGACGCAGCAGCGACATGTGCAGCA
AAATTCTACCAGCATCTCTTTAAACTTCCAGCAGCAGCAATCAGTGGTCG
CCCCAGTCCCCCCCCACTCACTCCAAGCTGCCAAGACGAAGCTCGGACAC
GTCCTTTATGCCCTCGAAGATCTACG back to top
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