jgi.p|Nanoce1779_2|588610, mRNA_4285 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588610
Unique Name	mRNA_4285
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1908
Alignment location	scaffold_10:194726..196633 +

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Properties


Property Name	Value
TranscriptId	588696
Track	FilteredModels2
ProteinId	588610

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:194726..196633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588610	gene_4285	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588610	mRNA_4285-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4285	CDS_4285	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:194726..196633+
coding sequence from alignment at scaffold_10:194726..196633+

mRNA sequence

>mRNA_4285 ID=mRNA_4285|Name=jgi.p|Nanoce1779_2|588610|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp
ACAAAAGATGACGGAAAGCTTGCAGAAACGGCGCGCAGTGCGCGTTCCAC
TGGTGGCATTGCTAGCTCTGGTCCTGCACATCACGCAAACAAGCCACGCA
TTCCTCAAGCAACCTCCTCTCTCTAGTCACCATCGTCCGCGTCGTCGTCA
CCAGCAGCATGCGCCCGCCTCTGCCTCCCCGACGTCCTTGGCGCTCTTCA
AGGGTGTGCGTGACATCTTTTCTCGGCGGCAAAAAAGGGGTGAGAATCCG
GAAATCCCACCAGATGAGGAGAACATGACCAAGTACGAACGCTTTCGTCA
AGTCATTCCTCTCCCACCTGTGGGCGAGCGCCGTCGCTACTCGCTTGGCG
TAGGTTCCTCACGCTTGCCCAGCATCGAAGATTTGTGGGCCGAGGCTTGG
CCAACGATTGCCTGTGGCGACGCCATGGAACGACGGGATGCGCTGAACGA
AGGAAGTGGGCCTCCAGATGCGGAGGCATTGGTACGGAGGTTCGGCCAGG
AGAGTGCAACGATTCAAACGGTGTTCTACAAGGACGCCGCTTCCTGGTGT
CCGTACTGCGCCTCAGTATGGATGATGCTGGAAGAGAAGCAGCTACCTTA
CACCATGAAACGCATTAATCTGTTGTCGTACGGTGAGAAGCCCGAGTGGT
TATACGACGTCTCCGGGACGGGTTTAATGCCCGTTCTTGAAGTAGGGGGG
CGCATTCTTCGAGAATCGGTCGACATTTGCAAATTTATTGATTGGTGGCG
CGGAAATGACATAAGCCCCGCTGGGAAAAATACCAAAAGTTTGTGGCCTA
CCAAGGGCAATACCTTACACACGGAGGCCGAGGCGTTGCTAGGGTTGGAG
CGTGACCTTTTTCGAGATTGGTTCATTTACGTATTCGAAGGACCGGAGGA
AAGGGGAAGAGAGGAGTTTTGGGCCACACTTTTACAAGTGGAGACTGCAT
TGGCCAAAACTAGTGATAATCCTTGGTTCCTACCGGGGACGGACCCATCC
TTAGTTGATATTGTCTTCGCACCGAAAGTTGAGAGGATGGTGGCATCGTG
TCTGTATTGGAAAGGGATGACTCTGCGGGGGCATGCCGAGCTCCCAGCGC
TAGGCAAGTGGTTGGACGCGCTGGATCGACGACCCAGTTATGCTGCGATC
AAGGCCGATTTCTTCTCTCTCGTTAATGGCTTGGAGCCCTTGTTTGGTCG
GGCGTACGGTGTGGAGACGTCGGAAGTGAAGGAAATTCAACGCAAAATCG
ATGGCCTCCATTATACCTCTTGGCGTCTCCCTGTGTCGGCCGAGGAAAAT
ATTCGAGAGTATCTTCCGCCCGACACACAGCCTTCCGAGAGCTACGCGCG
GCAAAGAGCGGCAGTTCGCCTGATTTTGAACAATAAACGATTGCCTCGGT
ATATGGCGCGTGCTTTAGGGACACCAGGGCCCGAACATCGTAGCCCGCTG
GCGGATCCTCAAAATGCCGTTGATGAGTGGGTGTTACCAGAAGTGGATGC
TGCGTATCGATATCTCGTTTTGGCATTGCTCCGAGGAAAGGAGGTAGTGG
CGCCGTTGGTGGCTGCTGATAAGGCAGCGGCGGATACGATTTATGGAGGG
CCGATAGAGGAGGCGAGGGCGGCGAGGGGGAGGATTGTGGCGTGCTTGAA
TTATTTGAAGTTTCGGGTGGGGGTGCCCAGAGACATGACGTTGGCGGAGG
CGAGGCAGGTGAGGGGGACGTTGACGTGGTTGGTCGAGGCTTTGAAATGA
GGGGGGATGGCAAGGTGGGGATTGTGTAAATGTGTGTCCATAGCTAGAGA
ATAAAGTCTATATGTAGCGTGATCTGTGAGCCAAAGACCATTAGCGATAG
TAAAGCACTTAGAGAAATGTAGGTCATAAGAAAGAACGAGTAAGGCACCG
AAAGAAAG

protein sequence of jgi.p|Nanoce1779_2|588610

>mRNA_4285-protein ID=mRNA_4285-protein|Name=jgi.p|Nanoce1779_2|588610|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MTESLQKRRAVRVPLVALLALVLHITQTSHAFLKQPPLSSHHRPRRRHQQ
HAPASASPTSLALFKGVRDIFSRRQKRGENPEIPPDEENMTKYERFRQVI
PLPPVGERRRYSLGVGSSRLPSIEDLWAEAWPTIACGDAMERRDALNEGS
GPPDAEALVRRFGQESATIQTVFYKDAASWCPYCASVWMMLEEKQLPYTM
KRINLLSYGEKPEWLYDVSGTGLMPVLEVGGRILRESVDICKFIDWWRGN
DISPAGKNTKSLWPTKGNTLHTEAEALLGLERDLFRDWFIYVFEGPEERG
REEFWATLLQVETALAKTSDNPWFLPGTDPSLVDIVFAPKVERMVASCLY
WKGMTLRGHAELPALGKWLDALDRRPSYAAIKADFFSLVNGLEPLFGRAY
GVETSEVKEIQRKIDGLHYTSWRLPVSAEENIREYLPPDTQPSESYARQR
AAVRLILNNKRLPRYMARALGTPGPEHRSPLADPQNAVDEWVLPEVDAAY
RYLVLALLRGKEVVAPLVAADKAAADTIYGGPIEEARAARGRIVACLNYL
KFRVGVPRDMTLAEARQVRGTLTWLVEALK*

mRNA from alignment at scaffold_10:194726..196633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4285 ID=mRNA_4285|Name=jgi.p|Nanoce1779_2|588610|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at scaffold_10:194726..196633+ (Nannochloropsis oceanica)
ACAAAAGATGACGGAAAGCTTGCAGAAACGGCGCGCAGTGCGCGTTCCAC
TGGTGGCATTGCTAGCTCTGGTCCTGCACATCACGCAAACAAGCCACGCA
TTCCTCAAGCAACCTCCTCTCTCTAGTCACCATCGTCCGCGTCGTCGTCA
CCAGCAGCATGCGCCCGCCTCTGCCTCCCCGACGTCCTTGGCGCTCTTCA
AGGGTGTGCGTGACATCTTTTCTCGGCGGCAAAAAAGGGGTGAGAATCCG
GAAATCCCACCAGATGAGGAGAACATGACCAAGTACGAACGCTTTCGTCA
AGTCATTCCTCTCCCACCTGTGGGCGAGCGCCGTCGCTACTCGCTTGGCG
TAGGTTCCTCACGCTTGCCCAGCATCGAAGATTTGTGGGCCGAGGCTTGG
CCAACGATTGCCTGTGGCGACGCCATGGAACGACGGGATGCGCTGAACGA
AGGAAGTGGGCCTCCAGATGCGGAGGCATTGGTACGGAGGTTCGGCCAGG
AGAGTGCAACGATTCAAACGGTGTTCTACAAGGACGCCGCTTCCTGGTGT
CCGTACTGCGCCTCAGTATGGATGATGCTGGAAGAGAAGCAGCTACCTTA
CACCATGAAACGCATTAATCTGTTGTCGTACGGTGAGAAGCCCGAGTGGT
TATACGACGTCTCCGGGACGGGTTTAATGCCCGTTCTTGAAGTAGGGGGG
CGCATTCTTCGAGAATCGGTCGACATTTGCAAATTTATTGATTGGTGGCG
CGGAAATGACATAAGCCCCGCTGGGAAAAATACCAAAAGTTTGTGGCCTA
CCAAGGGCAATACCTTACACACGGAGGCCGAGGCGTTGCTAGGGTTGGAG
CGTGACCTTTTTCGAGATTGGTTCATTTACGTATTCGAAGGACCGGAGGA
AAGGGGAAGAGAGGAGTTTTGGGCCACACTTTTACAAGTGGAGACTGCAT
TGGCCAAAACTAGTGATAATCCTTGGTTCCTACCGGGGACGGACCCATCC
TTAGTTGATATTGTCTTCGCACCGAAAGTTGAGAGGATGGTGGCATCGTG
TCTGTATTGGAAAGGGATGACTCTGCGGGGGCATGCCGAGCTCCCAGCGC
TAGGCAAGTGGTTGGACGCGCTGGATCGACGACCCAGTTATGCTGCGATC
AAGGCCGATTTCTTCTCTCTCGTTAATGGCTTGGAGCCCTTGTTTGGTCG
GGCGTACGGTGTGGAGACGTCGGAAGTGAAGGAAATTCAACGCAAAATCG
ATGGCCTCCATTATACCTCTTGGCGTCTCCCTGTGTCGGCCGAGGAAAAT
ATTCGAGAGTATCTTCCGCCCGACACACAGCCTTCCGAGAGCTACGCGCG
GCAAAGAGCGGCAGTTCGCCTGATTTTGAACAATAAACGATTGCCTCGGT
ATATGGCGCGTGCTTTAGGGACACCAGGGCCCGAACATCGTAGCCCGCTG
GCGGATCCTCAAAATGCCGTTGATGAGTGGGTGTTACCAGAAGTGGATGC
TGCGTATCGATATCTCGTTTTGGCATTGCTCCGAGGAAAGGAGGTAGTGG
CGCCGTTGGTGGCTGCTGATAAGGCAGCGGCGGATACGATTTATGGAGGG
CCGATAGAGGAGGCGAGGGCGGCGAGGGGGAGGATTGTGGCGTGCTTGAA
TTATTTGAAGTTTCGGGTGGGGGTGCCCAGAGACATGACGTTGGCGGAGG
CGAGGCAGGTGAGGGGGACGTTGACGTGGTTGGTCGAGGCTTTGAAATGA
GGGGGGATGGCAAGGTGGGGATTGTGTAAATGTGTGTCCATAGCTAGAGA
ATAAAGTCTATATGTAGCGTGATCTGTGAGCCAAAGACCATTAGCGATAG
TAAAGCACTTAGAGAAATGTAGGTCATAAGAAAGAACGAGTAAGGCACCG
AAAGAAAG

Coding sequence (CDS) from alignment at scaffold_10:194726..196633+

>mRNA_4285 ID=mRNA_4285|Name=jgi.p|Nanoce1779_2|588610|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at scaffold_10:194726..196633+ (Nannochloropsis oceanica)
ATGACGGAAAGCTTGCAGAAACGGCGCGCAGTGCGCGTTCCACTGGTGGC
ATTGCTAGCTCTGGTCCTGCACATCACGCAAACAAGCCACGCATTCCTCA
AGCAACCTCCTCTCTCTAGTCACCATCGTCCGCGTCGTCGTCACCAGCAG
CATGCGCCCGCCTCTGCCTCCCCGACGTCCTTGGCGCTCTTCAAGGGTGT
GCGTGACATCTTTTCTCGGCGGCAAAAAAGGGGTGAGAATCCGGAAATCC
CACCAGATGAGGAGAACATGACCAAGTACGAACGCTTTCGTCAAGTCATT
CCTCTCCCACCTGTGGGCGAGCGCCGTCGCTACTCGCTTGGCGTAGGTTC
CTCACGCTTGCCCAGCATCGAAGATTTGTGGGCCGAGGCTTGGCCAACGA
TTGCCTGTGGCGACGCCATGGAACGACGGGATGCGCTGAACGAAGGAAGT
GGGCCTCCAGATGCGGAGGCATTGGTACGGAGGTTCGGCCAGGAGAGTGC
AACGATTCAAACGGTGTTCTACAAGGACGCCGCTTCCTGGTGTCCGTACT
GCGCCTCAGTATGGATGATGCTGGAAGAGAAGCAGCTACCTTACACCATG
AAACGCATTAATCTGTTGTCGTACGGTGAGAAGCCCGAGTGGTTATACGA
CGTCTCCGGGACGGGTTTAATGCCCGTTCTTGAAGTAGGGGGGCGCATTC
TTCGAGAATCGGTCGACATTTGCAAATTTATTGATTGGTGGCGCGGAAAT
GACATAAGCCCCGCTGGGAAAAATACCAAAAGTTTGTGGCCTACCAAGGG
CAATACCTTACACACGGAGGCCGAGGCGTTGCTAGGGTTGGAGCGTGACC
TTTTTCGAGATTGGTTCATTTACGTATTCGAAGGACCGGAGGAAAGGGGA
AGAGAGGAGTTTTGGGCCACACTTTTACAAGTGGAGACTGCATTGGCCAA
AACTAGTGATAATCCTTGGTTCCTACCGGGGACGGACCCATCCTTAGTTG
ATATTGTCTTCGCACCGAAAGTTGAGAGGATGGTGGCATCGTGTCTGTAT
TGGAAAGGGATGACTCTGCGGGGGCATGCCGAGCTCCCAGCGCTAGGCAA
GTGGTTGGACGCGCTGGATCGACGACCCAGTTATGCTGCGATCAAGGCCG
ATTTCTTCTCTCTCGTTAATGGCTTGGAGCCCTTGTTTGGTCGGGCGTAC
GGTGTGGAGACGTCGGAAGTGAAGGAAATTCAACGCAAAATCGATGGCCT
CCATTATACCTCTTGGCGTCTCCCTGTGTCGGCCGAGGAAAATATTCGAG
AGTATCTTCCGCCCGACACACAGCCTTCCGAGAGCTACGCGCGGCAAAGA
GCGGCAGTTCGCCTGATTTTGAACAATAAACGATTGCCTCGGTATATGGC
GCGTGCTTTAGGGACACCAGGGCCCGAACATCGTAGCCCGCTGGCGGATC
CTCAAAATGCCGTTGATGAGTGGGTGTTACCAGAAGTGGATGCTGCGTAT
CGATATCTCGTTTTGGCATTGCTCCGAGGAAAGGAGGTAGTGGCGCCGTT
GGTGGCTGCTGATAAGGCAGCGGCGGATACGATTTATGGAGGGCCGATAG
AGGAGGCGAGGGCGGCGAGGGGGAGGATTGTGGCGTGCTTGAATTATTTG
AAGTTTCGGGTGGGGGTGCCCAGAGACATGACGTTGGCGGAGGCGAGGCA
GGTGAGGGGGACGTTGACGTGGTTGGTCGAGGCTTTGAAATGA

Synonyms

Publications