jgi.p|Nanoce1779_2|588602, mRNA_4282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588602
Unique NamemRNA_4282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2100
Alignment locationscaffold_10:186703..188802 -

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Properties
Property NameValue
TranscriptId588688
TrackFilteredModels2
ProteinId588602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:186703..188802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588602gene_4282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588602mRNA_4282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4282CDS_4282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4282 ID=mRNA_4282|Name=jgi.p|Nanoce1779_2|588602|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp
GCTTCAACTGCCGGGGCAGTTTTGCCCCAAATTTTTGATTTGAGCTTTGA
TGCCCTTCCCTTGTCCTTCTTTTCCAAGTGCAGGTTGTCGACCACACACA
TGCGCGCCTATTCAACGAATCATCAGGGATAGCGGGATGGGAATGACCGC
GTCGACCGCTCGTATTTTCAACCCGAGTCCAAGCCTCTCTCGAACCATGG
TGCAATTGCCGAGCTCAGCAAGACCCACCCTCCCTCCTCCCCCCCCCACA
GCCACCATGTCTCTACCTGTGCGAAAACGACATGCATGGCCCCTACTTCG
ACAATCATGGATATCTTGGCCTCTCTTGCCGCCGCTAATCGCGCTGTTGT
TCCCAACAACTGCAGAGGCGCGGAGGGCATCAATTACGGCGTTTTATTCT
GTGCCCGTCGCTTTGCCATCACGCCGCTTTGCCTCTCAGCAGTCAATATT
ACGCAAGTCACACAGCCTTCTGCCCATCTCCTTGTCGCCCTCTCGCGTTC
TATCGGCGCCTGTACAAATACAAAGGCCACCGTGCTCTCTCCAACCTTTC
ACACCAGCAGCAACACGAGCCCCACTCCAGTCTCAATCCCGTCATAACCA
GCGACCATCACCCCCCAAACGTCAACGGATAATAGCGTGGGCGAGACGTC
TTCGATGGCAAAGAAAACAACGGAAATTTGACTCCTGTACATTCGATGAT
TTTGATCGGACCACATTACCGGAGCCGGAGGCCGCACGCAAGAAGCTGTT
AGCCAGCCTGCTCGTCGGGGCAGGCGCATCTGGTACGCTTCTACTGTCTA
TTTTGCTTCGAACCATGCCTTTGGGTAAGCGAGCCATCTTCTCTGCGGCG
CCATTGGCAGGGACTCTGTTGCCGTATTTCTTGTGTTTGGCGCGGGGGCT
GCCATTGGCGAGCGTGGGTAGGTGGCATAACGTGAGTGCAATCGGCCATC
GGCTCGGTGGGGTCGGGGCTTTGGTGCTACCTCTTGTCCTGGTGGTGCAG
GAGGCAATGACAAGCAGTCATGTTTCTGTCCTTTTGTATACGTCGACTAT
CCTCGCCATTTTTAGCAACCTTCTGTTTGGTGTTGCCTTGATCCCGACTC
GTTTCCCCGGGTATGATATACCTGCTGCTCGAGGCCTGGCTGTGGGGACT
CTGTATGGACTGTCTTTCTTGGGATGGAGCTTGACGTTTCGATTCGGGGC
ATATGGGTGGTACGGGCCGATAGGGAAGTTGTTTGCTATAATTGCTGTGT
ATGCAGTAGTATTTTCATGGAGTGACGCTGGGCAGAACATGTATTTTTGG
TGGAAAGGGAAATACAAGACGGAATTGGGGAGGAAGTGGTTTTTGCCATT
TGAACCCTCCTTGTTCCGGCAGGTGTTTGGGAGTAATTTGTGGCGGCAAC
CGAGGGCGGATGCATTGCAAGCTTCTTTGATGACCGCGTGGCAAGGGAGT
TTACCCACGATTTTTGTCGCCCTTCTGGGATCTGCATCCCTGCTCCAACT
ACCGTACCTCTTGTGGGGGCCTGCCTCAATGCAACAGCTGGTGAATTCTT
ACCCTGGCCTAGCCAGATGGGCGACGTACCAAGCCCTTCTTGCGGTGGCT
GCTAACAATTTCGCTACCTTTCTAGTGACCCTCGTGGTGCACAATCGACT
GCCGCTGGGTCATGTAGCTTTTTACAACGTGTGTGTGCCCTTGATCCCGC
TTTTGAATATCGCCGCGTTTTGCTGGCGATATCCGGGGGTGAGCTTGTCG
TTGATTGTGAGGCTGTTGGTGAGGGCACCGGGGAGGGAGATAGTCGCGGG
TGTACCGCCCGCGTTGTTGTCGTGAGGAAGGCAGGGAGGCTGGGAGGCAG
GTATAGGAGCTCGGTATTTGTACTTGCATTTTTGATATCGATAAAATTGT
AAACTGTTTTTTTGCAGACGAGGACGTGGAGTGGATTATATGTGTTTGTA
GGTATTGGAGGATAAAATTATTACCAAACAGCTTTGAAGCGACTCGTGCA
CGGGGGAAAATATCGAAATGAATACAAATGAGAGGAGAAATAATGACACA
CACATAATCATGAACCAGAAACGCTCAACGATACAATATAAGTAGTGACG
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protein sequence of jgi.p|Nanoce1779_2|588602

>mRNA_4282-protein ID=mRNA_4282-protein|Name=jgi.p|Nanoce1779_2|588602|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPFPCPSFPSAGCRPHTCAPIQRIIRDSGMGMTASTARIFNPSPSLSRTM
VQLPSSARPTLPPPPPTATMSLPVRKRHAWPLLRQSWISWPLLPPLIALL
FPTTAEARRASITAFYSVPVALPSRRFASQQSILRKSHSLLPISLSPSRV
LSAPVQIQRPPCSLQPFTPAATRAPLQSQSRHNQRPSPPKRQRIIAWARR
LRWQRKQRKFDSCTFDDFDRTTLPEPEAARKKLLASLLVGAGASGTLLLS
ILLRTMPLGKRAIFSAAPLAGTLLPYFLCLARGLPLASVGRWHNVSAIGH
RLGGVGALVLPLVLVVQEAMTSSHVSVLLYTSTILAIFSNLLFGVALIPT
RFPGYDIPAARGLAVGTLYGLSFLGWSLTFRFGAYGWYGPIGKLFAIIAV
YAVVFSWSDAGQNMYFWWKGKYKTELGRKWFLPFEPSLFRQVFGSNLWRQ
PRADALQASLMTAWQGSLPTIFVALLGSASLLQLPYLLWGPASMQQLVNS
YPGLARWATYQALLAVAANNFATFLVTLVVHNRLPLGHVAFYNVCVPLIP
LLNIAAFCWRYPGVSLSLIVRLLVRAPGREIVAGVPPALLS*
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mRNA from alignment at scaffold_10:186703..188802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4282 ID=mRNA_4282|Name=jgi.p|Nanoce1779_2|588602|organism=Nannochloropsis oceanica|type=mRNA|length=2100bp|location=Sequence derived from alignment at scaffold_10:186703..188802- (Nannochloropsis oceanica)
GCTTCAACTGCCGGGGCAGTTTTGCCCCAAATTTTTGATTTGAGCTTTGA
TGCCCTTCCCTTGTCCTTCTTTTCCAAGTGCAGGTTGTCGACCACACACA
TGCGCGCCTATTCAACGAATCATCAGGGATAGCGGGATGGGAATGACCGC
GTCGACCGCTCGTATTTTCAACCCGAGTCCAAGCCTCTCTCGAACCATGG
TGCAATTGCCGAGCTCAGCAAGACCCACCCTCCCTCCTCCCCCCCCCACA
GCCACCATGTCTCTACCTGTGCGAAAACGACATGCATGGCCCCTACTTCG
ACAATCATGGATATCTTGGCCTCTCTTGCCGCCGCTAATCGCGCTGTTGT
TCCCAACAACTGCAGAGGCGCGGAGGGCATCAATTACGGCGTTTTATTCT
GTGCCCGTCGCTTTGCCATCACGCCGCTTTGCCTCTCAGCAGTCAATATT
ACGCAAGTCACACAGCCTTCTGCCCATCTCCTTGTCGCCCTCTCGCGTTC
TATCGGCGCCTGTACAAATACAAAGGCCACCGTGCTCTCTCCAACCTTTC
ACACCAGCAGCAACACGAGCCCCACTCCAGTCTCAATCCCGTCATAACCA
GCGACCATCACCCCCCAAACGTCAACGGATAATAGCGTGGGCGAGACGTC
TTCGATGGCAAAGAAAACAACGGAAATTTGACTCCTGTACATTCGATGAT
TTTGATCGGACCACATTACCGGAGCCGGAGGCCGCACGCAAGAAGCTGTT
AGCCAGCCTGCTCGTCGGGGCAGGCGCATCTGGTACGCTTCTACTGTCTA
TTTTGCTTCGAACCATGCCTTTGGGTAAGCGAGCCATCTTCTCTGCGGCG
CCATTGGCAGGGACTCTGTTGCCGTATTTCTTGTGTTTGGCGCGGGGGCT
GCCATTGGCGAGCGTGGGTAGGTGGCATAACGTGAGTGCAATCGGCCATC
GGCTCGGTGGGGTCGGGGCTTTGGTGCTACCTCTTGTCCTGGTGGTGCAG
GAGGCAATGACAAGCAGTCATGTTTCTGTCCTTTTGTATACGTCGACTAT
CCTCGCCATTTTTAGCAACCTTCTGTTTGGTGTTGCCTTGATCCCGACTC
GTTTCCCCGGGTATGATATACCTGCTGCTCGAGGCCTGGCTGTGGGGACT
CTGTATGGACTGTCTTTCTTGGGATGGAGCTTGACGTTTCGATTCGGGGC
ATATGGGTGGTACGGGCCGATAGGGAAGTTGTTTGCTATAATTGCTGTGT
ATGCAGTAGTATTTTCATGGAGTGACGCTGGGCAGAACATGTATTTTTGG
TGGAAAGGGAAATACAAGACGGAATTGGGGAGGAAGTGGTTTTTGCCATT
TGAACCCTCCTTGTTCCGGCAGGTGTTTGGGAGTAATTTGTGGCGGCAAC
CGAGGGCGGATGCATTGCAAGCTTCTTTGATGACCGCGTGGCAAGGGAGT
TTACCCACGATTTTTGTCGCCCTTCTGGGATCTGCATCCCTGCTCCAACT
ACCGTACCTCTTGTGGGGGCCTGCCTCAATGCAACAGCTGGTGAATTCTT
ACCCTGGCCTAGCCAGATGGGCGACGTACCAAGCCCTTCTTGCGGTGGCT
GCTAACAATTTCGCTACCTTTCTAGTGACCCTCGTGGTGCACAATCGACT
GCCGCTGGGTCATGTAGCTTTTTACAACGTGTGTGTGCCCTTGATCCCGC
TTTTGAATATCGCCGCGTTTTGCTGGCGATATCCGGGGGTGAGCTTGTCG
TTGATTGTGAGGCTGTTGGTGAGGGCACCGGGGAGGGAGATAGTCGCGGG
TGTACCGCCCGCGTTGTTGTCGTGAGGAAGGCAGGGAGGCTGGGAGGCAG
GTATAGGAGCTCGGTATTTGTACTTGCATTTTTGATATCGATAAAATTGT
AAACTGTTTTTTTGCAGACGAGGACGTGGAGTGGATTATATGTGTTTGTA
GGTATTGGAGGATAAAATTATTACCAAACAGCTTTGAAGCGACTCGTGCA
CGGGGGAAAATATCGAAATGAATACAAATGAGAGGAGAAATAATGACACA
CACATAATCATGAACCAGAAACGCTCAACGATACAATATAAGTAGTGACG
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Coding sequence (CDS) from alignment at scaffold_10:186703..188802-

>mRNA_4282 ID=mRNA_4282|Name=jgi.p|Nanoce1779_2|588602|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_10:186703..188802- (Nannochloropsis oceanica)
ATGCCCTTCCCTTGTCCTTCTTTTCCAAGTGCAGGTTGTCGACCACACAC
ATGCGCGCCTATTCAACGAATCATCAGGGATAGCGGGATGGGAATGACCG
CGTCGACCGCTCGTATTTTCAACCCGAGTCCAAGCCTCTCTCGAACCATG
GTGCAATTGCCGAGCTCAGCAAGACCCACCCTCCCTCCTCCCCCCCCCAC
AGCCACCATGTCTCTACCTGTGCGAAAACGACATGCATGGCCCCTACTTC
GACAATCATGGATATCTTGGCCTCTCTTGCCGCCGCTAATCGCGCTGTTG
TTCCCAACAACTGCAGAGGCGCGGAGGGCATCAATTACGGCGTTTTATTC
TGTGCCCGTCGCTTTGCCATCACGCCGCTTTGCCTCTCAGCAGTCAATAT
TACGCAAGTCACACAGCCTTCTGCCCATCTCCTTGTCGCCCTCTCGCGTT
CTATCGGCGCCTGTACAAATACAAAGGCCACCGTGCTCTCTCCAACCTTT
CACACCAGCAGCAACACGAGCCCCACTCCAGTCTCAATCCCGTCATAACC
AGCGACCATCACCCCCCAAACGTCAACGGATAATAGCGTGGGCGAGACGT
CTTCGATGGCAAAGAAAACAACGGAAATTTGACTCCTGTACATTCGATGA
TTTTGATCGGACCACATTACCGGAGCCGGAGGCCGCACGCAAGAAGCTGT
TAGCCAGCCTGCTCGTCGGGGCAGGCGCATCTGGTACGCTTCTACTGTCT
ATTTTGCTTCGAACCATGCCTTTGGGTAAGCGAGCCATCTTCTCTGCGGC
GCCATTGGCAGGGACTCTGTTGCCGTATTTCTTGTGTTTGGCGCGGGGGC
TGCCATTGGCGAGCGTGGGTAGGTGGCATAACGTGAGTGCAATCGGCCAT
CGGCTCGGTGGGGTCGGGGCTTTGGTGCTACCTCTTGTCCTGGTGGTGCA
GGAGGCAATGACAAGCAGTCATGTTTCTGTCCTTTTGTATACGTCGACTA
TCCTCGCCATTTTTAGCAACCTTCTGTTTGGTGTTGCCTTGATCCCGACT
CGTTTCCCCGGGTATGATATACCTGCTGCTCGAGGCCTGGCTGTGGGGAC
TCTGTATGGACTGTCTTTCTTGGGATGGAGCTTGACGTTTCGATTCGGGG
CATATGGGTGGTACGGGCCGATAGGGAAGTTGTTTGCTATAATTGCTGTG
TATGCAGTAGTATTTTCATGGAGTGACGCTGGGCAGAACATGTATTTTTG
GTGGAAAGGGAAATACAAGACGGAATTGGGGAGGAAGTGGTTTTTGCCAT
TTGAACCCTCCTTGTTCCGGCAGGTGTTTGGGAGTAATTTGTGGCGGCAA
CCGAGGGCGGATGCATTGCAAGCTTCTTTGATGACCGCGTGGCAAGGGAG
TTTACCCACGATTTTTGTCGCCCTTCTGGGATCTGCATCCCTGCTCCAAC
TACCGTACCTCTTGTGGGGGCCTGCCTCAATGCAACAGCTGGTGAATTCT
TACCCTGGCCTAGCCAGATGGGCGACGTACCAAGCCCTTCTTGCGGTGGC
TGCTAACAATTTCGCTACCTTTCTAGTGACCCTCGTGGTGCACAATCGAC
TGCCGCTGGGTCATGTAGCTTTTTACAACGTGTGTGTGCCCTTGATCCCG
CTTTTGAATATCGCCGCGTTTTGCTGGCGATATCCGGGGGTGAGCTTGTC
GTTGATTGTGAGGCTGTTGGTGAGGGCACCGGGGAGGGAGATAGTCGCGG
GTGTACCGCCCGCGTTGTTGTCGTGA
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Synonyms
Publications