jgi.p|Nanoce1779_2|646168, mRNA_4281 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|646168
Unique Name	mRNA_4281
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2136
Alignment location	scaffold_10:184787..186922 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	646254
Track	FilteredModels2
ProteinId	646168

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:184787..186922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|646168	gene_4281	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|646168	mRNA_4281-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4281	CDS_4281	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:184787..186922+
coding sequence from alignment at scaffold_10:184787..186922+

mRNA sequence

>mRNA_4281 ID=mRNA_4281|Name=jgi.p|Nanoce1779_2|646168|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp
AGCAAAATGATGATGCTTAGGGCCCTTGGTCATCGTCGCCTACCTCGCCC
ATGCCCCAATTCGAAGCATTTAATCCACATTCGCACCACAAACCACATCC
ACCGGCAGCTCCTGTGGCACGAAGAGGACTGAAAGGCAGTAACACCATCC
TACTCATCACCGCGTTTTCTCCCCCTTCTCATTTCCTCCCCCTTCAAACA
GGAGGCGTCAAACAAGCAAGCCATGCTCCAGTCCCAGCAGCAATAACACA
GCAAGAAAGCGCCTGCACTACACTACATAATGGGGCCCCTGCCGTTGTCA
TCGCGGGACCCAAAGAAAAAGGGCTGCGGAACTAAACACAACGTCCGGAC
CTGGTGCAACCAAGATCCTTGCGGGGTTGTCTGCGCCGGGGTCACCTGGT
GGCTGATTGCTTATGCGCAGTACACTATCAACAAGGTCGTGATTTTTGAG
TGGATGGGCTTGTTGTCTTTGCCGGGGTTGGTGAATTTTGTCGCGTTCAA
TACCACGGCGTGCTTGGCGATGCTCTCGCATGTCCGTGCGATGATGACGG
ATCCTGGGGCGGTCCCTCGCGAGGCTTTACCTTTGCCAGACGAGGAAGGT
TTGATTGAAAATGGGAGGGCAGATGGTGCCGTTGCCTTGGAAGAGGGCAA
GCACCCGCTGCCCAGTGATGGCGCAGGGATAGGCCCTCGCCAGCGTGTGC
GTAAGTTTTGTCGGAGGTGCAATGCATTCAAGCCGGCAAGAGCTCATCAT
TGCAGTATTTGCAAGAGATGCATTATCAAGATGGATCACCACTGTCCCTG
GGTGAATAATTGCGTGGGCATTGGCAACCATAAGTTGTTTTTGTTGTTCA
TCTTTTACATATTTTTGATGTGTACTTACGCATTGATCTTGGTGGTGGCA
AGGTATGCCAAGTGCATGGGAGAGGAGGAGCCGGCTGTGACGAAAGGGTG
TGATGACGTCACAGGAAATTTGCTGGTAGTGTTTTTGGTGATTGAGGCGA
TTTTATTCGGTCTATTCACTTGCTGTATGATGCTTGATCAGTGGACTGTT
GTCTCGACCAACACTACTTCTATCGACAGGCTGAAAATGGGAACGGGAGG
GGTGCAGTTTCAAGCGTTGCAGCAACAGCAGCAGCAAGGGAGGAAGAGAG
GAGGGAAAGGGGACGTGAATGAAGTGTTTGGTGGGAGGGAAGGGGGGAGG
ATAAGAGGGCATTGGTTCTGGCCGGTGCCGGCTCAGTTTCCGGGAACAAC
TAAGAGCGATGTGTTGGGGTATCGTGTGGAGGGAGGGGAGGAGGACGGGG
GGGTAGGAGGGGGTGGAAGAGGGAGGAGAGAGATAGAGGAGGAGTGTCTG
GAGGCGGACGAAGAGACGGGTATAATGCTGTTGGATAAAAGAAGGCGATC
GTCGTCGGGAGGAATAGGGATGGAGGTGATGGTGAAGGAAGAGCAGCTTC
TGTCGGATGGCATGGGACGGAGGGAGGGAGGGAGGAGTAGTGGCATCGGG
GGTTTGGCGCCGGTACCGAGTAAACGGACACCGACACAGGCGAGCAAGGG
AGTGGGGGGAGGAGGGGGAGTGGGGGGGGGAGGAGGAGGAGGAGGAGGAG
GAGGTGGTTGTGGTGGAGGAGGAGAGCTGTCGTCATCTGTCTCGGTGGGA
GTAGGCGATCGCATGGCTTTGCTACGGGGAGAGGGTCTGTATGATGGCAA
AGGGTGAAAGAGAGGGAGCAGGGGTGGGTATCAAAGGAATGGACCAAATA
GTGTATGTACAGTGAGTCACTTTCCGCCGTGAATTATAAAGACAAGAAAG
TACGGGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
TGTGTGAGAAGAGGATGGGGCGGGATGGAAACACCAAGAAGGAAAACTCT
GCAGCAAACAAGACCACGTCACTACTTATATTGTATCGTTGAGCGTTTCT
GGTTCATGATTATGTGTGTGTCATTATTTCTCCTCTCATTTGTATTCATT
TCGATATTTTCCCCCGTGCACGAGTCGCTTCAAAGCTGTTTGGTAATAAT
TTTATCCTCCAATACCTACAAACACATATAATCCACTCCACGTCCTCGTC
TGCAAAAAAACAGTTTACAATTTTATCGATATCAAA

protein sequence of jgi.p|Nanoce1779_2|646168

>mRNA_4281-protein ID=mRNA_4281-protein|Name=jgi.p|Nanoce1779_2|646168|organism=Nannochloropsis oceanica|type=polypeptide|length=476bp
MGPLPLSSRDPKKKGCGTKHNVRTWCNQDPCGVVCAGVTWWLIAYAQYTI
NKVVIFEWMGLLSLPGLVNFVAFNTTACLAMLSHVRAMMTDPGAVPREAL
PLPDEEGLIENGRADGAVALEEGKHPLPSDGAGIGPRQRVRKFCRRCNAF
KPARAHHCSICKRCIIKMDHHCPWVNNCVGIGNHKLFLLFIFYIFLMCTY
ALILVVARYAKCMGEEEPAVTKGCDDVTGNLLVVFLVIEAILFGLFTCCM
MLDQWTVVSTNTTSIDRLKMGTGGVQFQALQQQQQQGRKRGGKGDVNEVF
GGREGGRIRGHWFWPVPAQFPGTTKSDVLGYRVEGGEEDGGVGGGGRGRR
EIEEECLEADEETGIMLLDKRRRSSSGGIGMEVMVKEEQLLSDGMGRREG
GRSSGIGGLAPVPSKRTPTQASKGVGGGGGVGGGGGGGGGGGGCGGGGEL
SSSVSVGVGDRMALLRGEGLYDGKG*

mRNA from alignment at scaffold_10:184787..186922+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4281 ID=mRNA_4281|Name=jgi.p|Nanoce1779_2|646168|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at scaffold_10:184787..186922+ (Nannochloropsis oceanica)
AGCAAAATGATGATGCTTAGGGCCCTTGGTCATCGTCGCCTACCTCGCCC
ATGCCCCAATTCGAAGCATTTAATCCACATTCGCACCACAAACCACATCC
ACCGGCAGCTCCTGTGGCACGAAGAGGACTGAAAGGCAGTAACACCATCC
TACTCATCACCGCGTTTTCTCCCCCTTCTCATTTCCTCCCCCTTCAAACA
GGAGGCGTCAAACAAGCAAGCCATGCTCCAGTCCCAGCAGCAATAACACA
GCAAGAAAGCGCCTGCACTACACTACATAATGGGGCCCCTGCCGTTGTCA
TCGCGGGACCCAAAGAAAAAGGGCTGCGGAACTAAACACAACGTCCGGAC
CTGGTGCAACCAAGATCCTTGCGGGGTTGTCTGCGCCGGGGTCACCTGGT
GGCTGATTGCTTATGCGCAGTACACTATCAACAAGGTCGTGATTTTTGAG
TGGATGGGCTTGTTGTCTTTGCCGGGGTTGGTGAATTTTGTCGCGTTCAA
TACCACGGCGTGCTTGGCGATGCTCTCGCATGTCCGTGCGATGATGACGG
ATCCTGGGGCGGTCCCTCGCGAGGCTTTACCTTTGCCAGACGAGGAAGGT
TTGATTGAAAATGGGAGGGCAGATGGTGCCGTTGCCTTGGAAGAGGGCAA
GCACCCGCTGCCCAGTGATGGCGCAGGGATAGGCCCTCGCCAGCGTGTGC
GTAAGTTTTGTCGGAGGTGCAATGCATTCAAGCCGGCAAGAGCTCATCAT
TGCAGTATTTGCAAGAGATGCATTATCAAGATGGATCACCACTGTCCCTG
GGTGAATAATTGCGTGGGCATTGGCAACCATAAGTTGTTTTTGTTGTTCA
TCTTTTACATATTTTTGATGTGTACTTACGCATTGATCTTGGTGGTGGCA
AGGTATGCCAAGTGCATGGGAGAGGAGGAGCCGGCTGTGACGAAAGGGTG
TGATGACGTCACAGGAAATTTGCTGGTAGTGTTTTTGGTGATTGAGGCGA
TTTTATTCGGTCTATTCACTTGCTGTATGATGCTTGATCAGTGGACTGTT
GTCTCGACCAACACTACTTCTATCGACAGGCTGAAAATGGGAACGGGAGG
GGTGCAGTTTCAAGCGTTGCAGCAACAGCAGCAGCAAGGGAGGAAGAGAG
GAGGGAAAGGGGACGTGAATGAAGTGTTTGGTGGGAGGGAAGGGGGGAGG
ATAAGAGGGCATTGGTTCTGGCCGGTGCCGGCTCAGTTTCCGGGAACAAC
TAAGAGCGATGTGTTGGGGTATCGTGTGGAGGGAGGGGAGGAGGACGGGG
GGGTAGGAGGGGGTGGAAGAGGGAGGAGAGAGATAGAGGAGGAGTGTCTG
GAGGCGGACGAAGAGACGGGTATAATGCTGTTGGATAAAAGAAGGCGATC
GTCGTCGGGAGGAATAGGGATGGAGGTGATGGTGAAGGAAGAGCAGCTTC
TGTCGGATGGCATGGGACGGAGGGAGGGAGGGAGGAGTAGTGGCATCGGG
GGTTTGGCGCCGGTACCGAGTAAACGGACACCGACACAGGCGAGCAAGGG
AGTGGGGGGAGGAGGGGGAGTGGGGGGGGGAGGAGGAGGAGGAGGAGGAG
GAGGTGGTTGTGGTGGAGGAGGAGAGCTGTCGTCATCTGTCTCGGTGGGA
GTAGGCGATCGCATGGCTTTGCTACGGGGAGAGGGTCTGTATGATGGCAA
AGGGTGAAAGAGAGGGAGCAGGGGTGGGTATCAAAGGAATGGACCAAATA
GTGTATGTACAGTGAGTCACTTTCCGCCGTGAATTATAAAGACAAGAAAG
TACGGGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
TGTGTGAGAAGAGGATGGGGCGGGATGGAAACACCAAGAAGGAAAACTCT
GCAGCAAACAAGACCACGTCACTACTTATATTGTATCGTTGAGCGTTTCT
GGTTCATGATTATGTGTGTGTCATTATTTCTCCTCTCATTTGTATTCATT
TCGATATTTTCCCCCGTGCACGAGTCGCTTCAAAGCTGTTTGGTAATAAT
TTTATCCTCCAATACCTACAAACACATATAATCCACTCCACGTCCTCGTC
TGCAAAAAAACAGTTTACAATTTTATCGATATCAAA

Coding sequence (CDS) from alignment at scaffold_10:184787..186922+

>mRNA_4281 ID=mRNA_4281|Name=jgi.p|Nanoce1779_2|646168|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_10:184787..186922+ (Nannochloropsis oceanica)
ATGGGGCCCCTGCCGTTGTCATCGCGGGACCCAAAGAAAAAGGGCTGCGG
AACTAAACACAACGTCCGGACCTGGTGCAACCAAGATCCTTGCGGGGTTG
TCTGCGCCGGGGTCACCTGGTGGCTGATTGCTTATGCGCAGTACACTATC
AACAAGGTCGTGATTTTTGAGTGGATGGGCTTGTTGTCTTTGCCGGGGTT
GGTGAATTTTGTCGCGTTCAATACCACGGCGTGCTTGGCGATGCTCTCGC
ATGTCCGTGCGATGATGACGGATCCTGGGGCGGTCCCTCGCGAGGCTTTA
CCTTTGCCAGACGAGGAAGGTTTGATTGAAAATGGGAGGGCAGATGGTGC
CGTTGCCTTGGAAGAGGGCAAGCACCCGCTGCCCAGTGATGGCGCAGGGA
TAGGCCCTCGCCAGCGTGTGCGTAAGTTTTGTCGGAGGTGCAATGCATTC
AAGCCGGCAAGAGCTCATCATTGCAGTATTTGCAAGAGATGCATTATCAA
GATGGATCACCACTGTCCCTGGGTGAATAATTGCGTGGGCATTGGCAACC
ATAAGTTGTTTTTGTTGTTCATCTTTTACATATTTTTGATGTGTACTTAC
GCATTGATCTTGGTGGTGGCAAGGTATGCCAAGTGCATGGGAGAGGAGGA
GCCGGCTGTGACGAAAGGGTGTGATGACGTCACAGGAAATTTGCTGGTAG
TGTTTTTGGTGATTGAGGCGATTTTATTCGGTCTATTCACTTGCTGTATG
ATGCTTGATCAGTGGACTGTTGTCTCGACCAACACTACTTCTATCGACAG
GCTGAAAATGGGAACGGGAGGGGTGCAGTTTCAAGCGTTGCAGCAACAGC
AGCAGCAAGGGAGGAAGAGAGGAGGGAAAGGGGACGTGAATGAAGTGTTT
GGTGGGAGGGAAGGGGGGAGGATAAGAGGGCATTGGTTCTGGCCGGTGCC
GGCTCAGTTTCCGGGAACAACTAAGAGCGATGTGTTGGGGTATCGTGTGG
AGGGAGGGGAGGAGGACGGGGGGGTAGGAGGGGGTGGAAGAGGGAGGAGA
GAGATAGAGGAGGAGTGTCTGGAGGCGGACGAAGAGACGGGTATAATGCT
GTTGGATAAAAGAAGGCGATCGTCGTCGGGAGGAATAGGGATGGAGGTGA
TGGTGAAGGAAGAGCAGCTTCTGTCGGATGGCATGGGACGGAGGGAGGGA
GGGAGGAGTAGTGGCATCGGGGGTTTGGCGCCGGTACCGAGTAAACGGAC
ACCGACACAGGCGAGCAAGGGAGTGGGGGGAGGAGGGGGAGTGGGGGGGG
GAGGAGGAGGAGGAGGAGGAGGAGGTGGTTGTGGTGGAGGAGGAGAGCTG
TCGTCATCTGTCTCGGTGGGAGTAGGCGATCGCATGGCTTTGCTACGGGG
AGAGGGTCTGTATGATGGCAAAGGGTGA

Synonyms

Publications