jgi.p|Nanoce1779_2|588597, mRNA_4280 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588597
Unique NamemRNA_4280
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length556
Alignment locationscaffold_10:183558..184532 -

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Properties
Property NameValue
TranscriptId588683
TrackFilteredModels2
ProteinId588597
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:183558..184532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588597gene_4280Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588597mRNA_4280-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4280CDS_4280Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4280 ID=mRNA_4280|Name=jgi.p|Nanoce1779_2|588597|organism=Nannochloropsis oceanica|type=mRNA|length=556bp
AGGCATCGATGCTGCTCTCCATGGCGTTGCGGCGCACAATGGCTGCCCAG
CGGCCAGCAATGGCGGGGGCAGGCCGCCGTGGCCTGGCCACGACTAGCAG
CAGCGGGGGCGGGGCCCTTTACCACACGCTGTACAAGAACGTCTTTCGCA
GCAACATTGCCTACTTGACTTATGTCTTTGCGGGGGCCATTGCGGTAGAG
TGGGTCTACTCCAAGGGCATCGACACGGCATGGGAGCTGAGCAACAGTGG
GAAACTTTACCACCATGTAGACTGGAGCAAGTGGCACTTCCACCTAGACG
AGGAAGAAGAGGAGGAAGAGGACGAAGAGGAGGAGTAAAGTAAAGCTGAG
TAGCATGTGGAGTAGCCGCGTATGCATTGAGCGTGTATGTGTGATGTAGG
GAAGGAGGGAGGGGAAGGAGGGGGGGACGCGGGATTCGCCGTGACGTCGC
CTTCTCCATTCTGTGCGATTGGTGGCTATCTGGGGGAAGAGAAAAAGCTG
CAACAGAATGGGGCGGTGAGAACGACCGATAAGGAACGAAATGATGTTTT
GGTTGA
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protein sequence of jgi.p|Nanoce1779_2|588597

>mRNA_4280-protein ID=mRNA_4280-protein|Name=jgi.p|Nanoce1779_2|588597|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MLLSMALRRTMAAQRPAMAGAGRRGLATTSSSGGGALYHTLYKNVFRSNI
AYLTYVFAGAIAVEWVYSKGIDTAWELSNSGKLYHHVDWSKWHFHLDEEE
EEEEDEEEE*
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mRNA from alignment at scaffold_10:183558..184532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4280 ID=mRNA_4280|Name=jgi.p|Nanoce1779_2|588597|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at scaffold_10:183558..184532- (Nannochloropsis oceanica)
AGGCATCGATGCTGCTCTCCATGGCGTTGCGGCGCACAATGGCTGCCCAG
CGGCCAGCAATGGCGGGGGCAGGTATGTACACTCGAAGGAAAGAGGGAGG
AAATGAGAAAGTCGATCTGGGAGCTGTGCACTCGTCGTCGTGTCTTGTCC
TGCATCAACCAACACGTCAAGCGCCCACCCAAACTCACACCCCATATCCT
CCTCCCTCTTTCGTTAGGCCGCCGTGGCCTGGCCACGACTAGCAGCAGCG
GGGGCGGGGCCCTTTACCACACGCTGTACAAGAACGTCTTTCGCAGCAAC
ATTGCCTACTTGACTTATGTCTTTGCGGGGGCCATTGCGGTAGAGTGGGT
CTACTCCAAGGGCATCGACACGGCATGGGAGCTGAGCAACAGTGGGGTAC
GTCTCGTGTTTGTGTTTTGCTGGTGGGGAGAATGGAGCGAGATCGGGATG
TGTGAAGGAATGGAGGGGCCTTCGCTGTAGCTTGGTAGAGAGGGTGAAGG
AAAGAGAGAAAGCAAAGGTTGATTTGGGATGCTGCGATCAGTAATGGACT
CTCATTTGATGATATAATTGTTCTGGTGAAGACAATCGAGAAAGCGGTGT
TCTTCAAAGAAAGAACAAGCAATGCGTATGACCTCACACTGGCACACTTT
CACAACACCACCAAACACAGAAACTTTACCACCATGTAGACTGGAGCAAG
TGGCACTTCCACCTAGACGAGGAAGAAGAGGAGGAAGAGGACGAAGAGGA
GGAGTAAAGTAAAGCTGAGTAGCATGTGGAGTAGCCGCGTATGCATTGAG
CGTGTATGTGTGATGTAGGGAAGGAGGGAGGGGAAGGAGGGGGGGACGCG
GGATTCGCCGTGACGTCGCCTTCTCCATTCTGTGCGATTGGTGGCTATCT
GGGGGAAGAGAAAAAGCTGCAACAGAATGGGGCGGTGAGAACGACCGATA
AGGAACGAAATGATGTTTTGGTTGA
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Coding sequence (CDS) from alignment at scaffold_10:183558..184532-

>mRNA_4280 ID=mRNA_4280|Name=jgi.p|Nanoce1779_2|588597|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_10:183558..184532- (Nannochloropsis oceanica)
AAACTTTACCACCATGTAGACTGGAGCAAGTGGCACTTCCACCTAGACGA
GGAAGAAGAGGAGGAAGAGGACGAAGAGGAGGAGTAAGCCGCCGTGGCCT
GGCCACGACTAGCAGCAGCGGGGGCGGGGCCCTTTACCACACGCTGTACA
AGAACGTCTTTCGCAGCAACATTGCCTACTTGACTTATGTCTTTGCGGGG
GCCATTGCGGTAGAGTGGGTCTACTCCAAGGGCATCGACACGGCATGGGA
GCTGAGCAACAGTGGGATGCTGCTCTCCATGGCGTTGCGGCGCACAATGG
CTGCCCAGCGGCCAGCAATGGCGGGGGCAGAAACTTTACCACCATGTAGA
CTGGAGCAAGTGGCACTTCCACCTAGACGAGGAAGAAGAGGAGGAAGAGG
ACGAAGAGGAGGAGTAAGCCGCCGTGGCCTGGCCACGACTAGCAGCAGCG
GGGGCGGGGCCCTTTACCACACGCTGTACAAGAACGTCTTTCGCAGCAAC
ATTGCCTACTTGACTTATGTCTTTGCGGGGGCCATTGCGGTAGAGTGGGT
CTACTCCAAGGGCATCGACACGGCATGGGAGCTGAGCAACAGTGGGATGC
TGCTCTCCATGGCGTTGCGGCGCACAATGGCTGCCCAGCGGCCAGCAATG
GCGGGGGCAGAAACTTTACCACCATGTAGACTGGAGCAAGTGGCACTTCC
ACCTAGACGAGGAAGAAGAGGAGGAAGAGGACGAAGAGGAGGAGTAAGCC
GCCGTGGCCTGGCCACGACTAGCAGCAGCGGGGGCGGGGCCCTTTACCAC
ACGCTGTACAAGAACGTCTTTCGCAGCAACATTGCCTACTTGACTTATGT
CTTTGCGGGGGCCATTGCGGTAGAGTGGGTCTACTCCAAGGGCATCGACA
CGGCATGGGAGCTGAGCAACAGTGGGATGCTGCTCTCCATGGCGTTGCGG
CGCACAATGGCTGCCCAGCGGCCAGCAATGGCGGGGGCAG
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Synonyms
Publications