jgi.p|Nanoce1779_2|657968, mRNA_428 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|657968
Unique Name	mRNA_428
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2588
Alignment location	scaffold_3:1055174..1057761 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	658054
Track	FilteredModels2
ProteinId	657968

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1055174..1057761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657968	gene_428	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|657968	mRNA_428-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_428	CDS_428	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1055174..1057761+
coding sequence from alignment at scaffold_3:1055174..1057761+

mRNA sequence

>mRNA_428 ID=mRNA_428|Name=jgi.p|Nanoce1779_2|657968|organism=Nannochloropsis oceanica|type=mRNA|length=2588bp
CAAGCATGTGGTATAGGGCATGCCGTCGCCCGTACGTCTTTAAAATTCAT
TCACGAACTTACTCAGTGCACTCAGGTACAGCATGCCCAGCTCGTGGGAA
CTTGGGTAGCTGAAGCGGCTGTTATTGACTCATGCCAAGCGTCTGAGTTT
GAATCAGCAAGTGTTCGCTGTTGAGCAGCCCATGCCGCACTTCTTGCTTG
CACTTTCTTATATCATTCCCTCAACCCCTCCATTCCCCAAATCATGTGTC
CATACATGTGTCCATAAAAGTAGTATATTTCTTGGCCACGCACGCCCCGT
GGGAGCTTCTTTTGGCTCTGCGGGTTGGATCCCTGCTCCGCATCCTTTGC
TACGGCCCACGGAACGTGTTTCCACTAGAGCACCATGATGAAGCGGGACT
TTGTCGAGACGGGCTACGATGCAAGCGACGAGGACAGCGATACGGACAGT
ATGGAGGAGGAAGGGTACGGGAGCGCGAGCCGGCCTTGTTTTTGTTGTCA
AGTTGCCGATACCCACAACAAGTGGGTCAATGGGCGGCCGCCTCGCTTGC
TAAACTTGCAACAGACCTTATACCGCCTCGTCATCATCTCGACCTACGTG
GGGTTCATCCTCCTGGCCGTGCAACAGGTTAATTTTGTGCTAACCAGTTC
CACGGACAAGCACGAAATGGCTTGGACGATAGGGGGAGCCTTCGTCATTG
CTACAGTGCCCATCTCCCTCTTCCAAATATTCCAGCACCTCTCCAACTTC
GTTGAACCCAAGCAACAGACCCACGTCATCCGCATGGTATCCATGGTCCC
TCTTTATGCAATTCAATCCTGGTTTTCCCTCCGCTACCAGAATTTGAGTT
TATACACACAGTGCGTGCGAGAGGCCTACGAATCCTACGTCATCTATGCC
TTTGTCCAATACCTCATCAGTTATATGGGTAGCGAGGAGCAACTCATCCT
TAAGCTCCAGACTAAGCCCGCCGTACTTGGACGACATATGGCGCCTTTCT
GCTGCCTCTCCCCTTGGTCGATGGGGGCCGAGTTTCTCAATCGATGCAAG
ATGGGTGTGCTCCAGTACCTGGGCATCCGTCTCGTCACCCTCATCTTGAC
ATTCGCCTTGGAATACGTCGGGCTTTACGGAGAAGGAGAATACTCCGTTC
GGAGGGGTTTTTTCTGGGTGACCGTCGTAAATTGCATCTCTCAAACCTGG
GCATTGTACATCCTTATTCTTTTCTATCACGCCACCCACAAGGAGCTCAT
TTCCATCAACCCTTGCGGAAAATTCTTCTCGATTAAGTCGGTAGTCTTTG
CCTCTTGGTGGCAATCCCTCTTGATTGGCTTGATGGTTCATCAAGGGACC
ATAGGCGAGCTCGATAGTCATTCCGCCGAGATGGTTGCCAAAGGAGTGCA
AGATCTGTTGATCTGTACGGAAATGCTCATGGCTGCGATTGCATTTACTT
TTGCCTTTCCCGTCTCTGACTTTGTCTCTCCCATCGAGCCGGCCTACATG
AAGGAGCCCTGGGCAACGGAGTTGAGGCAGCCGCAGCAACAACAGCAGCA
GTTGCAACAACACCAACAACACCAACAACAGCAGGGGTATCATGAGACTG
GGTGTGAGCATAGTGGGGGGAGCGGGGGAGGGGTGGGTGGGAAGGGGAGC
AGCAGTGGAGGGGTTATGGGGAGTGCTTGCAAGAGCGCGGATGGCATAGC
GTTACTAAAGGGAGGAAGTGGTGGAGGAGGGGACTTGCGTAGGGGGGGGG
GCGGGAGCGGGTATTATCACATAAGTGGATCGTCGCATCACAACCATCAG
AAACAGCATCTACGAAGTGGTGGTGGAGGTGGGGGGGGGGGGGGGGGGGG
GGAGGTACCTTCGATTTGGGCGGCATTGTGGACAAGTTGTGTGCCAATGG
ATGTGAGGGAGGATTTCAAGTTAGCGACGTACCAGGTCATGGACGACTGT
TCGTGTTTCAAACGAAACGGGGGGAATGGAGGTTTGAATGGGAGCTGGTG
GCCCTGTCGGTGTAGAAGTCGCTGTGGGCAGACCAAGGCGCACAGGAGCA
CCAGCAGCGGCATGAATGGGAGTGGGAGGGACGGGGGTAGCGGGGTTAGT
AAGGCAGGTGGGAGACATTCCTCCGCAGCCGCGTCCTCGTCCTCTGTCAC
CGGTCCGCCAATGGTGGCGATGGTTGGAGCCGTGAGTACGAGCAACAGCA
GCGGTGGGAATTGATCGTATTTCGGTAAGAGCCAGACGGATTCGACGGGG
GCGGATGGGAAACGTCGCTAGAGGGAGCTCCTCCACGAATGCTGGTGGGG
GTGCTTTCGCCAGCATTGTCATCAGCCACATCGTTTCACCGTCTCCCTCA
ATATCCTCCACCTTCTTCCAATTGCCGTTGTTGATTTAGCGTTCAAAAGT
GAAAAATGAGCTGAAATGGTAAAGCAGTGTCCATGGTAAGTAAGGATGTC
GCTGTGTGTGAGATGGGATCTCGCCAGTGACCTCATAAAAAAGGTGCCCG
ATTTGAGAGTTTGTGCAAAAGAAGTGGGACATCAGAACTGAAGAATTATC
TAATAGACTCTGGTGGTCACTGGAACAAATTGTGATTA

protein sequence of jgi.p|Nanoce1779_2|657968

>mRNA_428-protein ID=mRNA_428-protein|Name=jgi.p|Nanoce1779_2|657968|organism=Nannochloropsis oceanica|type=polypeptide|length=610bp
MMKRDFVETGYDASDEDSDTDSMEEEGYGSASRPCFCCQVADTHNKWVNG
RPPRLLNLQQTLYRLVIISTYVGFILLAVQQVNFVLTSSTDKHEMAWTIG
GAFVIATVPISLFQIFQHLSNFVEPKQQTHVIRMVSMVPLYAIQSWFSLR
YQNLSLYTQCVREAYESYVIYAFVQYLISYMGSEEQLILKLQTKPAVLGR
HMAPFCCLSPWSMGAEFLNRCKMGVLQYLGIRLVTLILTFALEYVGLYGE
GEYSVRRGFFWVTVVNCISQTWALYILILFYHATHKELISINPCGKFFSI
KSVVFASWWQSLLIGLMVHQGTIGELDSHSAEMVAKGVQDLLICTEMLMA
AIAFTFAFPVSDFVSPIEPAYMKEPWATELRQPQQQQQQLQQHQQHQQQQ
GYHETGCEHSGGSGGGVGGKGSSSGGVMGSACKSADGIALLKGGSGGGGD
LRRGGGGSGYYHISGSSHHNHQKQHLRSGGGGGGGGGGGEVPSIWAALWT
SCVPMDVREDFKLATYQVMDDCSCFKRNGGNGGLNGSWWPCRCRSRCGQT
KAHRSTSSGMNGSGRDGGSGVSKAGGRHSSAAASSSSVTGPPMVAMVGAV
STSNSSGGN*

mRNA from alignment at scaffold_3:1055174..1057761+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_428 ID=mRNA_428|Name=jgi.p|Nanoce1779_2|657968|organism=Nannochloropsis oceanica|type=mRNA|length=2588bp|location=Sequence derived from alignment at scaffold_3:1055174..1057761+ (Nannochloropsis oceanica)
CAAGCATGTGGTATAGGGCATGCCGTCGCCCGTACGTCTTTAAAATTCAT
TCACGAACTTACTCAGTGCACTCAGGTACAGCATGCCCAGCTCGTGGGAA
CTTGGGTAGCTGAAGCGGCTGTTATTGACTCATGCCAAGCGTCTGAGTTT
GAATCAGCAAGTGTTCGCTGTTGAGCAGCCCATGCCGCACTTCTTGCTTG
CACTTTCTTATATCATTCCCTCAACCCCTCCATTCCCCAAATCATGTGTC
CATACATGTGTCCATAAAAGTAGTATATTTCTTGGCCACGCACGCCCCGT
GGGAGCTTCTTTTGGCTCTGCGGGTTGGATCCCTGCTCCGCATCCTTTGC
TACGGCCCACGGAACGTGTTTCCACTAGAGCACCATGATGAAGCGGGACT
TTGTCGAGACGGGCTACGATGCAAGCGACGAGGACAGCGATACGGACAGT
ATGGAGGAGGAAGGGTACGGGAGCGCGAGCCGGCCTTGTTTTTGTTGTCA
AGTTGCCGATACCCACAACAAGTGGGTCAATGGGCGGCCGCCTCGCTTGC
TAAACTTGCAACAGACCTTATACCGCCTCGTCATCATCTCGACCTACGTG
GGGTTCATCCTCCTGGCCGTGCAACAGGTTAATTTTGTGCTAACCAGTTC
CACGGACAAGCACGAAATGGCTTGGACGATAGGGGGAGCCTTCGTCATTG
CTACAGTGCCCATCTCCCTCTTCCAAATATTCCAGCACCTCTCCAACTTC
GTTGAACCCAAGCAACAGACCCACGTCATCCGCATGGTATCCATGGTCCC
TCTTTATGCAATTCAATCCTGGTTTTCCCTCCGCTACCAGAATTTGAGTT
TATACACACAGTGCGTGCGAGAGGCCTACGAATCCTACGTCATCTATGCC
TTTGTCCAATACCTCATCAGTTATATGGGTAGCGAGGAGCAACTCATCCT
TAAGCTCCAGACTAAGCCCGCCGTACTTGGACGACATATGGCGCCTTTCT
GCTGCCTCTCCCCTTGGTCGATGGGGGCCGAGTTTCTCAATCGATGCAAG
ATGGGTGTGCTCCAGTACCTGGGCATCCGTCTCGTCACCCTCATCTTGAC
ATTCGCCTTGGAATACGTCGGGCTTTACGGAGAAGGAGAATACTCCGTTC
GGAGGGGTTTTTTCTGGGTGACCGTCGTAAATTGCATCTCTCAAACCTGG
GCATTGTACATCCTTATTCTTTTCTATCACGCCACCCACAAGGAGCTCAT
TTCCATCAACCCTTGCGGAAAATTCTTCTCGATTAAGTCGGTAGTCTTTG
CCTCTTGGTGGCAATCCCTCTTGATTGGCTTGATGGTTCATCAAGGGACC
ATAGGCGAGCTCGATAGTCATTCCGCCGAGATGGTTGCCAAAGGAGTGCA
AGATCTGTTGATCTGTACGGAAATGCTCATGGCTGCGATTGCATTTACTT
TTGCCTTTCCCGTCTCTGACTTTGTCTCTCCCATCGAGCCGGCCTACATG
AAGGAGCCCTGGGCAACGGAGTTGAGGCAGCCGCAGCAACAACAGCAGCA
GTTGCAACAACACCAACAACACCAACAACAGCAGGGGTATCATGAGACTG
GGTGTGAGCATAGTGGGGGGAGCGGGGGAGGGGTGGGTGGGAAGGGGAGC
AGCAGTGGAGGGGTTATGGGGAGTGCTTGCAAGAGCGCGGATGGCATAGC
GTTACTAAAGGGAGGAAGTGGTGGAGGAGGGGACTTGCGTAGGGGGGGGG
GCGGGAGCGGGTATTATCACATAAGTGGATCGTCGCATCACAACCATCAG
AAACAGCATCTACGAAGTGGTGGTGGAGGTGGGGGGGGGGGGGGGGGGGG
GGAGGTACCTTCGATTTGGGCGGCATTGTGGACAAGTTGTGTGCCAATGG
ATGTGAGGGAGGATTTCAAGTTAGCGACGTACCAGGTCATGGACGACTGT
TCGTGTTTCAAACGAAACGGGGGGAATGGAGGTTTGAATGGGAGCTGGTG
GCCCTGTCGGTGTAGAAGTCGCTGTGGGCAGACCAAGGCGCACAGGAGCA
CCAGCAGCGGCATGAATGGGAGTGGGAGGGACGGGGGTAGCGGGGTTAGT
AAGGCAGGTGGGAGACATTCCTCCGCAGCCGCGTCCTCGTCCTCTGTCAC
CGGTCCGCCAATGGTGGCGATGGTTGGAGCCGTGAGTACGAGCAACAGCA
GCGGTGGGAATTGATCGTATTTCGGTAAGAGCCAGACGGATTCGACGGGG
GCGGATGGGAAACGTCGCTAGAGGGAGCTCCTCCACGAATGCTGGTGGGG
GTGCTTTCGCCAGCATTGTCATCAGCCACATCGTTTCACCGTCTCCCTCA
ATATCCTCCACCTTCTTCCAATTGCCGTTGTTGATTTAGCGTTCAAAAGT
GAAAAATGAGCTGAAATGGTAAAGCAGTGTCCATGGTAAGTAAGGATGTC
GCTGTGTGTGAGATGGGATCTCGCCAGTGACCTCATAAAAAAGGTGCCCG
ATTTGAGAGTTTGTGCAAAAGAAGTGGGACATCAGAACTGAAGAATTATC
TAATAGACTCTGGTGGTCACTGGAACAAATTGTGATTA

Coding sequence (CDS) from alignment at scaffold_3:1055174..1057761+

>mRNA_428 ID=mRNA_428|Name=jgi.p|Nanoce1779_2|657968|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_3:1055174..1057761+ (Nannochloropsis oceanica)
ATGATGAAGCGGGACTTTGTCGAGACGGGCTACGATGCAAGCGACGAGGA
CAGCGATACGGACAGTATGGAGGAGGAAGGGTACGGGAGCGCGAGCCGGC
CTTGTTTTTGTTGTCAAGTTGCCGATACCCACAACAAGTGGGTCAATGGG
CGGCCGCCTCGCTTGCTAAACTTGCAACAGACCTTATACCGCCTCGTCAT
CATCTCGACCTACGTGGGGTTCATCCTCCTGGCCGTGCAACAGGTTAATT
TTGTGCTAACCAGTTCCACGGACAAGCACGAAATGGCTTGGACGATAGGG
GGAGCCTTCGTCATTGCTACAGTGCCCATCTCCCTCTTCCAAATATTCCA
GCACCTCTCCAACTTCGTTGAACCCAAGCAACAGACCCACGTCATCCGCA
TGGTATCCATGGTCCCTCTTTATGCAATTCAATCCTGGTTTTCCCTCCGC
TACCAGAATTTGAGTTTATACACACAGTGCGTGCGAGAGGCCTACGAATC
CTACGTCATCTATGCCTTTGTCCAATACCTCATCAGTTATATGGGTAGCG
AGGAGCAACTCATCCTTAAGCTCCAGACTAAGCCCGCCGTACTTGGACGA
CATATGGCGCCTTTCTGCTGCCTCTCCCCTTGGTCGATGGGGGCCGAGTT
TCTCAATCGATGCAAGATGGGTGTGCTCCAGTACCTGGGCATCCGTCTCG
TCACCCTCATCTTGACATTCGCCTTGGAATACGTCGGGCTTTACGGAGAA
GGAGAATACTCCGTTCGGAGGGGTTTTTTCTGGGTGACCGTCGTAAATTG
CATCTCTCAAACCTGGGCATTGTACATCCTTATTCTTTTCTATCACGCCA
CCCACAAGGAGCTCATTTCCATCAACCCTTGCGGAAAATTCTTCTCGATT
AAGTCGGTAGTCTTTGCCTCTTGGTGGCAATCCCTCTTGATTGGCTTGAT
GGTTCATCAAGGGACCATAGGCGAGCTCGATAGTCATTCCGCCGAGATGG
TTGCCAAAGGAGTGCAAGATCTGTTGATCTGTACGGAAATGCTCATGGCT
GCGATTGCATTTACTTTTGCCTTTCCCGTCTCTGACTTTGTCTCTCCCAT
CGAGCCGGCCTACATGAAGGAGCCCTGGGCAACGGAGTTGAGGCAGCCGC
AGCAACAACAGCAGCAGTTGCAACAACACCAACAACACCAACAACAGCAG
GGGTATCATGAGACTGGGTGTGAGCATAGTGGGGGGAGCGGGGGAGGGGT
GGGTGGGAAGGGGAGCAGCAGTGGAGGGGTTATGGGGAGTGCTTGCAAGA
GCGCGGATGGCATAGCGTTACTAAAGGGAGGAAGTGGTGGAGGAGGGGAC
TTGCGTAGGGGGGGGGGCGGGAGCGGGTATTATCACATAAGTGGATCGTC
GCATCACAACCATCAGAAACAGCATCTACGAAGTGGTGGTGGAGGTGGGG
GGGGGGGGGGGGGGGGGGAGGTACCTTCGATTTGGGCGGCATTGTGGACA
AGTTGTGTGCCAATGGATGTGAGGGAGGATTTCAAGTTAGCGACGTACCA
GGTCATGGACGACTGTTCGTGTTTCAAACGAAACGGGGGGAATGGAGGTT
TGAATGGGAGCTGGTGGCCCTGTCGGTGTAGAAGTCGCTGTGGGCAGACC
AAGGCGCACAGGAGCACCAGCAGCGGCATGAATGGGAGTGGGAGGGACGG
GGGTAGCGGGGTTAGTAAGGCAGGTGGGAGACATTCCTCCGCAGCCGCGT
CCTCGTCCTCTGTCACCGGTCCGCCAATGGTGGCGATGGTTGGAGCCGTG
AGTACGAGCAACAGCAGCGGTGGGAATTGA

Synonyms

Publications