jgi.p|Nanoce1779_2|528026, mRNA_4277 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528026
Unique NamemRNA_4277
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1089
Alignment locationscaffold_10:176925..178013 -

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Properties
Property NameValue
TranscriptId528112
TrackFilteredModels2
ProteinId528026
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:176925..178013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528026gene_4277Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4277CDS_4277Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528026mRNA_4277-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4277 ID=mRNA_4277|Name=jgi.p|Nanoce1779_2|528026|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGAGTGCATCCTTTTTCGATCCACAACCACCACCACCATCAGCAGCAGC
AGCAGCAGCAGAAAAAGCAGCAGCAACAACAACACCACCAGCGCAAACGG
CAGCTTCAGTGAAAACCATCCTCCTACTCGCGACCACCGAAGATAAAGCC
TCCCTCAACATCGTCAAAGCCCTCCTCTCAAGAGGCGGCTGGGCCGAATC
GCCCTCGATGGACACAACATCCCGCATCTGGTACCGTACAACAAGCTCCC
ACAACATCTACCTCTGGCAAATATCGCAAGGCTTCCTCCACGCCGACTGG
CTTGACCGGAAATGGCTAGCCGCGTACCCGGAGCATAAAATTCAGGAGTT
GATCTTCCTCAGCCGCCATGCTGCTGTTAGTGGACGGCCTTCCTTGACCA
TTCACCCAATCGGTAATCCAGGCCAGCCCTTTGCAGTTGACGAGCAGGAT
CGAGCCGCGCATGGTGGTGTGCCGGGGCGTTGCGTCCCTCCCTCCCCGAG
GATGGCCTCTCTTTTTCGGCAGCTTTACAAGGCTGTGCAAGGGACGGCGT
TGGCAGATGTATTTGAAGTGACACTAGAAGCAACACATCACGGGCCTTGG
CTTGCCCATCCCTCAATGTTTGTGGAGATTGGCTCGAAAGAAGAGGATTG
GGGGAGGGAGGATGGTGCGTGTGTGTGGGCAGAGGTGCTGGACCAAAACT
TGGGGTTGAGTGCAGCGGAGGAAAGCAACAGCAGCAGCACCAACACCAGC
ACCAGCGGCACCAGTAGTAAATTAGTGGTGGTTGGTGTGGGTGGCGGGCA
TTACACCCCTAAAATGAACGATCTCCTGAGGCATCGTCCGGATGTCTTAC
TAGGGCATGTTCTGGCGTCCTACTGTTTTAATGGCCCCGCCGAAGACTGG
CAGCGTGGGATGGATGAGGCAATCCGCGCAACCCGCGCAGCCTATGAGGA
AGGAGAAAAGAAGGAGGACGTAAAAGTATGTGTTTACATTGACAAAAAGG
CGTTCAAAAGCGCTCCGCGACAAGCTTTGGTAAAATATCTTGAGGCTCAA
AGCATCTCATATGGATTTAAGGAGAGTGAACTAGTCTAA
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protein sequence of jgi.p|Nanoce1779_2|528026

>mRNA_4277-protein ID=mRNA_4277-protein|Name=jgi.p|Nanoce1779_2|528026|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MSASFFDPQPPPPSAAAAAAEKAAATTTPPAQTAASVKTILLLATTEDKA
SLNIVKALLSRGGWAESPSMDTTSRIWYRTTSSHNIYLWQISQGFLHADW
LDRKWLAAYPEHKIQELIFLSRHAAVSGRPSLTIHPIGNPGQPFAVDEQD
RAAHGGVPGRCVPPSPRMASLFRQLYKAVQGTALADVFEVTLEATHHGPW
LAHPSMFVEIGSKEEDWGREDGACVWAEVLDQNLGLSAAEESNSSSTNTS
TSGTSSKLVVVGVGGGHYTPKMNDLLRHRPDVLLGHVLASYCFNGPAEDW
QRGMDEAIRATRAAYEEGEKKEDVKVCVYIDKKAFKSAPRQALVKYLEAQ
SISYGFKESELV*
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mRNA from alignment at scaffold_10:176925..178013-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4277 ID=mRNA_4277|Name=jgi.p|Nanoce1779_2|528026|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp|location=Sequence derived from alignment at scaffold_10:176925..178013- (Nannochloropsis oceanica)
ATGAGTGCATCCTTTTTCGATCCACAACCACCACCACCATCAGCAGCAGC
AGCAGCAGCAGAAAAAGCAGCAGCAACAACAACACCACCAGCGCAAACGG
CAGCTTCAGTGAAAACCATCCTCCTACTCGCGACCACCGAAGATAAAGCC
TCCCTCAACATCGTCAAAGCCCTCCTCTCAAGAGGCGGCTGGGCCGAATC
GCCCTCGATGGACACAACATCCCGCATCTGGTACCGTACAACAAGCTCCC
ACAACATCTACCTCTGGCAAATATCGCAAGGCTTCCTCCACGCCGACTGG
CTTGACCGGAAATGGCTAGCCGCGTACCCGGAGCATAAAATTCAGGAGTT
GATCTTCCTCAGCCGCCATGCTGCTGTTAGTGGACGGCCTTCCTTGACCA
TTCACCCAATCGGTAATCCAGGCCAGCCCTTTGCAGTTGACGAGCAGGAT
CGAGCCGCGCATGGTGGTGTGCCGGGGCGTTGCGTCCCTCCCTCCCCGAG
GATGGCCTCTCTTTTTCGGCAGCTTTACAAGGCTGTGCAAGGGACGGCGT
TGGCAGATGTATTTGAAGTGACACTAGAAGCAACACATCACGGGCCTTGG
CTTGCCCATCCCTCAATGTTTGTGGAGATTGGCTCGAAAGAAGAGGATTG
GGGGAGGGAGGATGGTGCGTGTGTGTGGGCAGAGGTGCTGGACCAAAACT
TGGGGTTGAGTGCAGCGGAGGAAAGCAACAGCAGCAGCACCAACACCAGC
ACCAGCGGCACCAGTAGTAAATTAGTGGTGGTTGGTGTGGGTGGCGGGCA
TTACACCCCTAAAATGAACGATCTCCTGAGGCATCGTCCGGATGTCTTAC
TAGGGCATGTTCTGGCGTCCTACTGTTTTAATGGCCCCGCCGAAGACTGG
CAGCGTGGGATGGATGAGGCAATCCGCGCAACCCGCGCAGCCTATGAGGA
AGGAGAAAAGAAGGAGGACGTAAAAGTATGTGTTTACATTGACAAAAAGG
CGTTCAAAAGCGCTCCGCGACAAGCTTTGGTAAAATATCTTGAGGCTCAA
AGCATCTCATATGGATTTAAGGAGAGTGAACTAGTCTAA
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Coding sequence (CDS) from alignment at scaffold_10:176925..178013-

>mRNA_4277 ID=mRNA_4277|Name=jgi.p|Nanoce1779_2|528026|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_10:176925..178013- (Nannochloropsis oceanica)
ATGAGTGCATCCTTTTTCGATCCACAACCACCACCACCATCAGCAGCAGC
AGCAGCAGCAGAAAAAGCAGCAGCAACAACAACACCACCAGCGCAAACGG
CAGCTTCAGTGAAAACCATCCTCCTACTCGCGACCACCGAAGATAAAGCC
TCCCTCAACATCGTCAAAGCCCTCCTCTCAAGAGGCGGCTGGGCCGAATC
GCCCTCGATGGACACAACATCCCGCATCTGGTACCGTACAACAAGCTCCC
ACAACATCTACCTCTGGCAAATATCGCAAGGCTTCCTCCACGCCGACTGG
CTTGACCGGAAATGGCTAGCCGCGTACCCGGAGCATAAAATTCAGGAGTT
GATCTTCCTCAGCCGCCATGCTGCTGTTAGTGGACGGCCTTCCTTGACCA
TTCACCCAATCGGTAATCCAGGCCAGCCCTTTGCAGTTGACGAGCAGGAT
CGAGCCGCGCATGGTGGTGTGCCGGGGCGTTGCGTCCCTCCCTCCCCGAG
GATGGCCTCTCTTTTTCGGCAGCTTTACAAGGCTGTGCAAGGGACGGCGT
TGGCAGATGTATTTGAAGTGACACTAGAAGCAACACATCACGGGCCTTGG
CTTGCCCATCCCTCAATGTTTGTGGAGATTGGCTCGAAAGAAGAGGATTG
GGGGAGGGAGGATGGTGCGTGTGTGTGGGCAGAGGTGCTGGACCAAAACT
TGGGGTTGAGTGCAGCGGAGGAAAGCAACAGCAGCAGCACCAACACCAGC
ACCAGCGGCACCAGTAGTAAATTAGTGGTGGTTGGTGTGGGTGGCGGGCA
TTACACCCCTAAAATGAACGATCTCCTGAGGCATCGTCCGGATGTCTTAC
TAGGGCATGTTCTGGCGTCCTACTGTTTTAATGGCCCCGCCGAAGACTGG
CAGCGTGGGATGGATGAGGCAATCCGCGCAACCCGCGCAGCCTATGAGGA
AGGAGAAAAGAAGGAGGACGTAAAAGTATGTGTTTACATTGACAAAAAGG
CGTTCAAAAGCGCTCCGCGACAAGCTTTGGTAAAATATCTTGAGGCTCAA
AGCATCTCATATGGATTTAAGGAGAGTGAACTAGTCTAA
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Synonyms
Publications