jgi.p|Nanoce1779_2|588587, mRNA_4276 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588587
Unique Name	mRNA_4276
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1823
Alignment location	scaffold_10:174518..176340 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588673
Track	FilteredModels2
ProteinId	588587

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:174518..176340 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588587	gene_4276	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588587	mRNA_4276-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4276	CDS_4276	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:174518..176340+
coding sequence from alignment at scaffold_10:174518..176340+

mRNA sequence

>mRNA_4276 ID=mRNA_4276|Name=jgi.p|Nanoce1779_2|588587|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp
AGCTTCAACCTGCCCAAACTAAAACACAGCGATAGCCATGGCACGACCAG
CACCTCCCCCGCTGCCTGCCCCTTTCCCGCCACCACCGACTTCCTTCGAC
AGTAGCAGCAGCGACGAGCGTACCTCAACTCCTTCCCGTGACCCGGCTCA
CACACAACCCGACGGCCTCGACATTGAGGACGTCCTGTACTCTGCCAACT
CCTTCTGGGCAGTCCTGAAGCCCGTGGCCTTGACCATGTTTCTAGCGAGC
CTGGTGGTGGTGAATGTGGAATTTGCGACGGAAGACCAAGGAGTGAGTGT
ATATGCGATAAACGACGGGGACGCAGACGGGAATGGGGGGGACAGCAATT
CCGTCAAGCTCGGCAAGTCACTCATCAATGCTTTGACCATAGTTGGGGTT
ATTTGTGGGGCGACCATTCTGGTGGTGTTGCTTTATAAGTTTCGGTGCAT
GAAGTGCTTGTTTGGATACATGGCGTTTAGTAGCACGATGCTGTTGGGGC
TGATGGGGGGGTTGTTGTGGTACACGGCTTTGATACGATGGGATTTGCCA
TGTGATTACTTCACATTTGTCGCTGTTCTGTACAATTTCGCTTTTGTCGG
CGTGGCTGCCATATTTTATCAGAAGGGGATCCCAACCTGGGTGACCCAAG
GGTATTTGGTTATGATTTCTGTGATAATGGCCTGGCAGTTGTCGAGGTTC
GAGGAATGGACAGGCTGGGCCTTGTTGGTGGTCTTGGCCCTGTATGATTT
ATGTGCCGTGCTTACACCCTGTGGACCATTGAAGTATTTGGTAGGGTTGA
TGCAAGAGCGCGACGCTCCTACCATGCCTGGTCTGCTCTACGAGGCGGAG
TTGCCTGCTCATGCACGGCACCATCACAGGGTGCCGCCTCCACTCGTTGG
GAGGACAGGAGGAATAGCAGTAGCAGCAGACACAAGGGTGGAAGGAATGC
AAAGAACGGATCTACAGACGCCTGTGCGCGATGTGAGTAGGGAAGATGGG
GGGCCTGCGGCGTTGATACCTTCGGGCCCGGCGAGCAGCTTGCATTGCAA
CAATCCGCCTTCTCCTCTCGATCCGCTGTTGGACAGTTCGCACAGCAGCC
CGGGTGGAGATCATCTCGACCGTCGCCACCGTCACCATCAGCAGCAGCAA
CAGCCACACAAACAACAACAACAGCAGTTGCGGGGAGGTCGGATCAATTC
TAGCTTGCTCGAAGTAGGGGGTACTCCACAGGAGGAGGGGGATGCGGAGG
GTAGTGGCGAACGAGGAAATGGAGGGGTGGGCGGAAACAGTGGCACGGCT
GACTATCCTTTATCGTCGTCCTCCTCGCAGGAGCACCACGGAGGAAGAGG
AGCGCCGGAGGAGCGAAGCATTAAGCTGGGCTTGGGGGATTTTGTTTTTT
ACAGTGTTCTGGTGGGCAAGGCGGCTTTGTATGGGTTTGCGACTTGCGCG
GCCTGTTTCCTCGTCATTATTTCGGGCTTGGGCGCAACACTTGTGTTGCT
GAGTGTCTTTCGAAAGGCGCTGCCGGCATTGCCGATTTCGATTGGCCTCG
GCGTGCTGTTTTATTTGCTTACGCGCGTTGTTATCATTCCGTACATCGAT
GCCTTGGTCAGTTTACCTCTTTACGTCTAGGATAGGGGTCTGAGGGAGGG
TAGGATTATCCGTCTATTTGGGTCAATTCTGGTGAACTGGATAATGGCAA
AGCCTAAAGCACAGTAATAAGCAAGAACAGAGGACAAACATATATCAAAC
AAAAGCAAAACTTGTGAGAGTGGCATTTTTGCCTGTCCCTTGCTTCTCAT
AGTTCGCTACATCTTCTCTCCGT

protein sequence of jgi.p|Nanoce1779_2|588587

>mRNA_4276-protein ID=mRNA_4276-protein|Name=jgi.p|Nanoce1779_2|588587|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MARPAPPPLPAPFPPPPTSFDSSSSDERTSTPSRDPAHTQPDGLDIEDVL
YSANSFWAVLKPVALTMFLASLVVVNVEFATEDQGVSVYAINDGDADGNG
GDSNSVKLGKSLINALTIVGVICGATILVVLLYKFRCMKCLFGYMAFSST
MLLGLMGGLLWYTALIRWDLPCDYFTFVAVLYNFAFVGVAAIFYQKGIPT
WVTQGYLVMISVIMAWQLSRFEEWTGWALLVVLALYDLCAVLTPCGPLKY
LVGLMQERDAPTMPGLLYEAELPAHARHHHRVPPPLVGRTGGIAVAADTR
VEGMQRTDLQTPVRDVSREDGGPAALIPSGPASSLHCNNPPSPLDPLLDS
SHSSPGGDHLDRRHRHHQQQQQPHKQQQQQLRGGRINSSLLEVGGTPQEE
GDAEGSGERGNGGVGGNSGTADYPLSSSSSQEHHGGRGAPEERSIKLGLG
DFVFYSVLVGKAALYGFATCAACFLVIISGLGATLVLLSVFRKALPALPI
SIGLGVLFYLLTRVVIIPYIDALVSLPLYV*

mRNA from alignment at scaffold_10:174518..176340+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4276 ID=mRNA_4276|Name=jgi.p|Nanoce1779_2|588587|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp|location=Sequence derived from alignment at scaffold_10:174518..176340+ (Nannochloropsis oceanica)
AGCTTCAACCTGCCCAAACTAAAACACAGCGATAGCCATGGCACGACCAG
CACCTCCCCCGCTGCCTGCCCCTTTCCCGCCACCACCGACTTCCTTCGAC
AGTAGCAGCAGCGACGAGCGTACCTCAACTCCTTCCCGTGACCCGGCTCA
CACACAACCCGACGGCCTCGACATTGAGGACGTCCTGTACTCTGCCAACT
CCTTCTGGGCAGTCCTGAAGCCCGTGGCCTTGACCATGTTTCTAGCGAGC
CTGGTGGTGGTGAATGTGGAATTTGCGACGGAAGACCAAGGAGTGAGTGT
ATATGCGATAAACGACGGGGACGCAGACGGGAATGGGGGGGACAGCAATT
CCGTCAAGCTCGGCAAGTCACTCATCAATGCTTTGACCATAGTTGGGGTT
ATTTGTGGGGCGACCATTCTGGTGGTGTTGCTTTATAAGTTTCGGTGCAT
GAAGTGCTTGTTTGGATACATGGCGTTTAGTAGCACGATGCTGTTGGGGC
TGATGGGGGGGTTGTTGTGGTACACGGCTTTGATACGATGGGATTTGCCA
TGTGATTACTTCACATTTGTCGCTGTTCTGTACAATTTCGCTTTTGTCGG
CGTGGCTGCCATATTTTATCAGAAGGGGATCCCAACCTGGGTGACCCAAG
GGTATTTGGTTATGATTTCTGTGATAATGGCCTGGCAGTTGTCGAGGTTC
GAGGAATGGACAGGCTGGGCCTTGTTGGTGGTCTTGGCCCTGTATGATTT
ATGTGCCGTGCTTACACCCTGTGGACCATTGAAGTATTTGGTAGGGTTGA
TGCAAGAGCGCGACGCTCCTACCATGCCTGGTCTGCTCTACGAGGCGGAG
TTGCCTGCTCATGCACGGCACCATCACAGGGTGCCGCCTCCACTCGTTGG
GAGGACAGGAGGAATAGCAGTAGCAGCAGACACAAGGGTGGAAGGAATGC
AAAGAACGGATCTACAGACGCCTGTGCGCGATGTGAGTAGGGAAGATGGG
GGGCCTGCGGCGTTGATACCTTCGGGCCCGGCGAGCAGCTTGCATTGCAA
CAATCCGCCTTCTCCTCTCGATCCGCTGTTGGACAGTTCGCACAGCAGCC
CGGGTGGAGATCATCTCGACCGTCGCCACCGTCACCATCAGCAGCAGCAA
CAGCCACACAAACAACAACAACAGCAGTTGCGGGGAGGTCGGATCAATTC
TAGCTTGCTCGAAGTAGGGGGTACTCCACAGGAGGAGGGGGATGCGGAGG
GTAGTGGCGAACGAGGAAATGGAGGGGTGGGCGGAAACAGTGGCACGGCT
GACTATCCTTTATCGTCGTCCTCCTCGCAGGAGCACCACGGAGGAAGAGG
AGCGCCGGAGGAGCGAAGCATTAAGCTGGGCTTGGGGGATTTTGTTTTTT
ACAGTGTTCTGGTGGGCAAGGCGGCTTTGTATGGGTTTGCGACTTGCGCG
GCCTGTTTCCTCGTCATTATTTCGGGCTTGGGCGCAACACTTGTGTTGCT
GAGTGTCTTTCGAAAGGCGCTGCCGGCATTGCCGATTTCGATTGGCCTCG
GCGTGCTGTTTTATTTGCTTACGCGCGTTGTTATCATTCCGTACATCGAT
GCCTTGGTCAGTTTACCTCTTTACGTCTAGGATAGGGGTCTGAGGGAGGG
TAGGATTATCCGTCTATTTGGGTCAATTCTGGTGAACTGGATAATGGCAA
AGCCTAAAGCACAGTAATAAGCAAGAACAGAGGACAAACATATATCAAAC
AAAAGCAAAACTTGTGAGAGTGGCATTTTTGCCTGTCCCTTGCTTCTCAT
AGTTCGCTACATCTTCTCTCCGT

Coding sequence (CDS) from alignment at scaffold_10:174518..176340+

>mRNA_4276 ID=mRNA_4276|Name=jgi.p|Nanoce1779_2|588587|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_10:174518..176340+ (Nannochloropsis oceanica)
ATGGCACGACCAGCACCTCCCCCGCTGCCTGCCCCTTTCCCGCCACCACC
GACTTCCTTCGACAGTAGCAGCAGCGACGAGCGTACCTCAACTCCTTCCC
GTGACCCGGCTCACACACAACCCGACGGCCTCGACATTGAGGACGTCCTG
TACTCTGCCAACTCCTTCTGGGCAGTCCTGAAGCCCGTGGCCTTGACCAT
GTTTCTAGCGAGCCTGGTGGTGGTGAATGTGGAATTTGCGACGGAAGACC
AAGGAGTGAGTGTATATGCGATAAACGACGGGGACGCAGACGGGAATGGG
GGGGACAGCAATTCCGTCAAGCTCGGCAAGTCACTCATCAATGCTTTGAC
CATAGTTGGGGTTATTTGTGGGGCGACCATTCTGGTGGTGTTGCTTTATA
AGTTTCGGTGCATGAAGTGCTTGTTTGGATACATGGCGTTTAGTAGCACG
ATGCTGTTGGGGCTGATGGGGGGGTTGTTGTGGTACACGGCTTTGATACG
ATGGGATTTGCCATGTGATTACTTCACATTTGTCGCTGTTCTGTACAATT
TCGCTTTTGTCGGCGTGGCTGCCATATTTTATCAGAAGGGGATCCCAACC
TGGGTGACCCAAGGGTATTTGGTTATGATTTCTGTGATAATGGCCTGGCA
GTTGTCGAGGTTCGAGGAATGGACAGGCTGGGCCTTGTTGGTGGTCTTGG
CCCTGTATGATTTATGTGCCGTGCTTACACCCTGTGGACCATTGAAGTAT
TTGGTAGGGTTGATGCAAGAGCGCGACGCTCCTACCATGCCTGGTCTGCT
CTACGAGGCGGAGTTGCCTGCTCATGCACGGCACCATCACAGGGTGCCGC
CTCCACTCGTTGGGAGGACAGGAGGAATAGCAGTAGCAGCAGACACAAGG
GTGGAAGGAATGCAAAGAACGGATCTACAGACGCCTGTGCGCGATGTGAG
TAGGGAAGATGGGGGGCCTGCGGCGTTGATACCTTCGGGCCCGGCGAGCA
GCTTGCATTGCAACAATCCGCCTTCTCCTCTCGATCCGCTGTTGGACAGT
TCGCACAGCAGCCCGGGTGGAGATCATCTCGACCGTCGCCACCGTCACCA
TCAGCAGCAGCAACAGCCACACAAACAACAACAACAGCAGTTGCGGGGAG
GTCGGATCAATTCTAGCTTGCTCGAAGTAGGGGGTACTCCACAGGAGGAG
GGGGATGCGGAGGGTAGTGGCGAACGAGGAAATGGAGGGGTGGGCGGAAA
CAGTGGCACGGCTGACTATCCTTTATCGTCGTCCTCCTCGCAGGAGCACC
ACGGAGGAAGAGGAGCGCCGGAGGAGCGAAGCATTAAGCTGGGCTTGGGG
GATTTTGTTTTTTACAGTGTTCTGGTGGGCAAGGCGGCTTTGTATGGGTT
TGCGACTTGCGCGGCCTGTTTCCTCGTCATTATTTCGGGCTTGGGCGCAA
CACTTGTGTTGCTGAGTGTCTTTCGAAAGGCGCTGCCGGCATTGCCGATT
TCGATTGGCCTCGGCGTGCTGTTTTATTTGCTTACGCGCGTTGTTATCAT
TCCGTACATCGATGCCTTGGTCAGTTTACCTCTTTACGTCTAG

Synonyms

Publications